AT3G10915

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006571
Physical Location & Seq
Reverse (-)
3415933 .. 3417809
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10915.3

Sequence Viewer

Length: 489 bp
ATGGATAGTTTAAGTGATATCGATGGTGATTTCGATGGAAGAAATGAAGGAGGATCGTCATCGGATTATCGATTGTTGGGTCGGCAGATTACGGTTCATCAGTTCATGGGTGGTGGCAAAGCTGCTGACTTGCTCTTATGGAGGAGGCGACATCTTTCTTTGGGGGTTATCATTATATCAACTGTAGCCTGGCTTATATTCGAGTTTTCCGGGTTGCCTTTCTTATCTGTTTCTTCGGATGTCTTACTCATCGTGATCATGATATCATTCGTTCATGCCCGGGTTTCTGCTTTTAGGAATAGACAGTTGCATTCGTTGCCAGAGCTTGTTCTATCAGAGGAAATGGTGAATAGTGCTGCAGCTTCTTTCCGTATAAAACTCAATCACTTGCTTGTAATGGCTCATGATGTCACAGTTGGCAACGATTTTCGACTCTTCTTCAAGGTTATGAAGCTAACCCATTCAGAAACTCACGATGATGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

162

Amino Acids

18.17

Weight (kDa)

6.03

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 9 - 162 2.8e-46 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 61
AgsI TTSAA 1 cut(s) 442
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 4 cut(s) 122, 325, 362, 454
AluI AGCT 4 cut(s) 122, 325, 362, 454
AlwI GGATC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 279
ApeKI GCWGC 3 cut(s) 122, 356, 359
AsuC2I CCSGG 3 cut(s) 211, 280, 281
AsuHPI GGTGA 2 cut(s) 38, 358
AvaI CYCGRG 1 cut(s) 279
BbvI GCAGC 3 cut(s) 109, 343, 371
BccI CCATC 2 cut(s) 17, 29
BciT130I CCWGG 1 cut(s) 190
BclI TGATCA 1 cut(s) 255
BcnI CCSGG 3 cut(s) 211, 280, 281
BfmI CTRYAG 2 cut(s) 183, 357
BisI GCNGC 3 cut(s) 123, 357, 360
BlsI GCNGC 3 cut(s) 124, 358, 361
Bme1390I CCNGG 4 cut(s) 190, 211, 280, 281
BmeT110I CYCGRG 1 cut(s) 279
BmrFI CCNGG 4 cut(s) 190, 211, 280, 281
BpuMI CCSGG 3 cut(s) 211, 280, 281
Bsa29I ATCGAT 2 cut(s) 21, 70
BsaBI GATNNNNATC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 58
BseBI CCWGG 1 cut(s) 190
BseCI ATCGAT 2 cut(s) 21, 70
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 157
BseXI GCAGC 3 cut(s) 109, 343, 371
BshVI ATCGAT 2 cut(s) 21, 70
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 2 cut(s) 210, 280
BsmI GAATGC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 279
Bsp143I GATC 2 cut(s) 53, 255
BspDI ATCGAT 2 cut(s) 21, 70
BspHI TCATGA 2 cut(s) 258, 403
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 53, 255
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 4 cut(s) 94, 184, 306, 415
Bst6I CTCTTC 1 cut(s) 440
BstAPI GCANNNNNTGC 1 cut(s) 316
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 2 cut(s) 56, 258
BstMBI GATC 2 cut(s) 53, 255
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 4 cut(s) 188, 209, 278, 279
BstSFI CTRYAG 2 cut(s) 183, 357
BstV1I GCAGC 3 cut(s) 109, 343, 371
Bsu15I ATCGAT 2 cut(s) 21, 70
BsuTUI ATCGAT 2 cut(s) 21, 70
BtsCI GGATG 1 cut(s) 244
CciI TCATGA 2 cut(s) 258, 403
Cfr9I CCCGGG 1 cut(s) 279
ClaI ATCGAT 2 cut(s) 21, 70
CviAII CATG 4 cut(s) 106, 259, 275, 404
CviJI RGCY 7 cut(s) 122, 188, 193, 325, 362, 401, 454
CviKI_1 RGCY 7 cut(s) 122, 188, 193, 325, 362, 401, 454
DpnI GATC 2 cut(s) 55, 257
DpnII GATC 2 cut(s) 53, 255
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco32I GATATC 2 cut(s) 19, 264
Eco88I CYCGRG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 188
EcoRV GATATC 2 cut(s) 19, 264
FaeI CATG 4 cut(s) 109, 262, 278, 407
FaiI YATR 9 cut(s) 107, 139, 176, 197, 260, 276, 374, 405, 449
FatI CATG 4 cut(s) 105, 258, 274, 403
FbaI TGATCA 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 123, 357, 360
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 3 cut(s) 123, 357, 360
GluI GCNGC 3 cut(s) 123, 357, 360
HapII CCGG 2 cut(s) 210, 280
Hin1II CATG 4 cut(s) 109, 262, 278, 407
HinfI GANTC 1 cut(s) 432
HpaII CCGG 2 cut(s) 210, 280
HphI GGTGA 2 cut(s) 38, 358
Hpy188I TCNGA 4 cut(s) 64, 238, 337, 466
Hpy188III TCNNGA 4 cut(s) 253, 259, 404, 473
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 4 cut(s) 94, 184, 306, 415
HpyCH4V TGCA 2 cut(s) 310, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
Hsp92II CATG 4 cut(s) 109, 262, 278, 407
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 2 cut(s) 53, 255
LpnPI CCDG 5 cut(s) 175, 202, 223, 293, 333
Lsp1109I GCAGC 3 cut(s) 109, 343, 371
MaeIII GTNAC 1 cut(s) 409
MalI GATC 2 cut(s) 55, 257
MboI GATC 2 cut(s) 53, 255
MboII GAAGA 4 cut(s) 51, 225, 427, 430
MlyI GAGTC 1 cut(s) 426
MnlI CCTC 4 cut(s) 44, 135, 138, 331
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 477
MspI CCGG 2 cut(s) 210, 280
MspR9I CCNGG 4 cut(s) 190, 211, 280, 281
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 316
NciI CCSGG 3 cut(s) 211, 280, 281
NdeII GATC 2 cut(s) 53, 255
NlaIII CATG 4 cut(s) 109, 262, 278, 407
NmuCI GTSAC 1 cut(s) 409
PagI TCATGA 2 cut(s) 258, 403
PctI GAATGC 1 cut(s) 310
PkrI GCNGC 3 cut(s) 124, 358, 361
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PstI CTGCAG 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 123, 357, 360
Sau3AI GATC 2 cut(s) 53, 255
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 4 cut(s) 190, 211, 280, 281
SetI ASST 5 cut(s) 124, 327, 364, 447, 456
SfcI CTRYAG 2 cut(s) 183, 357
SmaI CCCGGG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 477
StyD4I CCNGG 4 cut(s) 188, 209, 278, 279
TaaI ACNGT 4 cut(s) 94, 184, 306, 415
TaqI TCGA 5 cut(s) 21, 33, 70, 201, 430
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 3 cut(s) 122, 356, 359
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 5 cut(s) 60, 86, 94, 263, 464
TspGWI ACGGA 1 cut(s) 359
TspMI CCCGGG 1 cut(s) 279
XmaI CCCGGG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.