Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006571

Physical Location & Seq

Genomic Coordinates Reverse (-)

27086028 .. 27090158

Gene Structure 4131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G262100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATGGAGAATTCACAAGATTTATGCAACACAGAGGGAGATGGGGATGGAAGGAAGGCCGTGGCTTCTACTTCTTATACCCCAACAGCAGGTAGCTCTGGGTATCGGTTGTTTGGTCGTCAAGGGTCAGTGCACAACTCCTTGGGTGGAGGTCAAGCTGCTGATGTTTTGTTGTGGAAGCGGGGGCGTGTTTCCTTTGGTGCTATCGTTGTTGCTACAATTTCTTGGCTCCTCTTTGAGCGGTCTGGATTATCATTCTTATCCATTTGTTCAGATGTCTTGCTGATTTTGGTTGTACTGTTATTTCTTCGAGCCAACTATGCTGTTTTCAGAAATAAACAATTACAAACATTACCGGAGCTAGTACTATCAGAGGAAATGGTTAATAATGCTGCAGCATCATTTCGTGTCAAAATCAACAATGTGCTGCTTATGGCTCATGACATCACGCTTGGCAAAGACTTTAGACTGTTCTTCAAGGTGGTGGTTTGTCTGTGGCTATTGTCTGTCATAGGCAGCTTTTTCTCATTCTTTACACTTGCTTATATTGGTTCAATCATATCGGTAACACTTCCTGCCTTGTACAGCAAATATGAAGAGACTGTGGACAGGTGTTACGGAAAGATCCACCGACAATTTTCAAAGCATTATAAAATCGTGGATGAGGGTGTTTTCAACAGACTTCCGAGAAATGCACCCAAGGACAAAGATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

239

Amino Acids

26.5

Weight (kDa)

9.17

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915
fragaria_vesca	FvH4_7g25710 FvH4_7g25710
malus_domestica	MD01G1164300.v1.1 MD01G1164400.v1.1 MD05G1328600.v1.1 MD07G1232000.v1.1
prunus_persica	Prupe.2G262100_v2.0.a1
pyrus_communis	pycom07g20970
rosa_chinensis	RchiOBHm_Chr1g0371931
rosa_laevigata	RLG00000026935
rosa_multiflora	Rmu_sc0001755.1_g000045 Rmu_sc0041892.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285370
rosa_rugosa	Rorug01G0367400
rosa_samantha	Rh1AG377100 Rh1BG340400 Rh1CG353500 Rh1DG371300
rosa_wichuraiana	Rw1G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
Acc36I	ACCTGC	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	241
AciI	CCGC	2 cut(s)	181, 241
AclWI	GGATC	1 cut(s)	619
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	3 cut(s)	297, 366, 584
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	478, 555, 642, 676
AluBI	AGCT	4 cut(s)	96, 158, 361, 519
AluI	AGCT	4 cut(s)	96, 158, 361, 519
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	593
Alw44I	GTGCAC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	619
AoxI	GGCC	1 cut(s)	57
ApaLI	GTGCAC	1 cut(s)	131
ApeKI	GCWGC	5 cut(s)	158, 392, 395, 427, 516
ApoI	RAATTY	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	5 cut(s)	145, 379, 407, 414, 528
BccI	CCATC	2 cut(s)	35, 41
BceAI	ACGGC	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	593
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	80
BisI	GCNGC	5 cut(s)	159, 393, 396, 428, 517
BlsI	GCNGC	5 cut(s)	160, 394, 397, 429, 518
BmcAI	AGTACT	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	230
BmsI	GCATC	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	60, 141, 699
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseDI	CCNNGG	3 cut(s)	60, 141, 699
BseGI	GGATG	2 cut(s)	52, 667
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	5 cut(s)	145, 379, 407, 414, 528
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	1 cut(s)	624
BspACI	CCGC	2 cut(s)	181, 241
BspANI	GGCC	1 cut(s)	59
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	230
BspMAI	CTGCAG	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	619
BsrBI	CCGCTC	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	582
BssECI	CCNNGG	3 cut(s)	60, 141, 699
BssMI	GATC	1 cut(s)	624
BssT1I	CCWWGG	2 cut(s)	141, 699
Bst4CI	ACNGT	3 cut(s)	300, 471, 604
Bst6I	CTCTTC	1 cut(s)	591
BstAUI	TGTACA	1 cut(s)	582
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	52, 667
BstKTI	GATC	1 cut(s)	627
BstMAI	GTCTC	1 cut(s)	593
BstMBI	GATC	1 cut(s)	624
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	135
BstV1I	GCAGC	5 cut(s)	145, 379, 407, 414, 528
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	52, 667
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	80
CciI	TCATGA	1 cut(s)	439
Csp6I	GTAC	3 cut(s)	296, 365, 583
CviAII	CATG	1 cut(s)	440
CviQI	GTAC	3 cut(s)	296, 365, 583
DpnI	GATC	1 cut(s)	626
DpnII	GATC	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco130I	CCWWGG	2 cut(s)	141, 699
EcoRI	GAATTC	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	141, 699
ErhI	CCWWGG	2 cut(s)	141, 699
FaeI	CATG	1 cut(s)	443
FatI	CATG	1 cut(s)	439
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	5 cut(s)	159, 393, 396, 428, 517
FokI	GGATG	2 cut(s)	59, 674
Fsp4HI	GCNGC	5 cut(s)	159, 393, 396, 428, 517
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	5 cut(s)	159, 393, 396, 428, 517
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	1 cut(s)	443
HinfI	GANTC	1 cut(s)	710
HpaII	CCGG	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	133, 607
Hpy188I	TCNGA	4 cut(s)	274, 332, 373, 687
Hpy188III	TCNNGA	2 cut(s)	246, 440
Hpy8I	GTNNAC	2 cut(s)	133, 607
HpyAV	CCTTC	2 cut(s)	45, 49
HpyCH4III	ACNGT	3 cut(s)	300, 471, 604
HpyCH4V	TGCA	4 cut(s)	27, 133, 395, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	443
Kzo9I	GATC	1 cut(s)	624
LmnI	GCTCC	2 cut(s)	234, 358
LpnPI	CCDG	6 cut(s)	75, 84, 231, 369, 588, 595
Lsp1109I	GCAGC	5 cut(s)	145, 379, 407, 414, 528
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	565, 614
MalI	GATC	1 cut(s)	626
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	1 cut(s)	624
MboII	GAAGA	3 cut(s)	299, 466, 608
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	4 cut(s)	10, 219, 341, 635
MnlI	CCTC	5 cut(s)	28, 143, 242, 367, 658
MseI	TTAA	1 cut(s)	384
MspI	CCGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	1 cut(s)	624
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	1 cut(s)	230
PagI	TCATGA	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	710
PkrI	GCNGC	5 cut(s)	160, 394, 397, 429, 518
PsiI	TTATAA	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	624
RsaI	GTAC	3 cut(s)	297, 366, 584
RsaNI	GTAC	3 cut(s)	296, 365, 583
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	5 cut(s)	159, 393, 396, 428, 517
Sau3AI	GATC	1 cut(s)	624
ScaI	AGTACT	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	8 cut(s)	94, 98, 154, 160, 363, 483, 521, 614
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	1 cut(s)	393
Sse9I	AATT	4 cut(s)	10, 219, 341, 635
SsiI	CCGC	2 cut(s)	181, 241
SspMI	CTAG	1 cut(s)	362
StyI	CCWWGG	2 cut(s)	141, 699
TaaI	ACNGT	3 cut(s)	300, 471, 604
TaqI	TCGA	1 cut(s)	310
TasI	AATT	4 cut(s)	10, 219, 341, 635
TatI	WGTACW	3 cut(s)	295, 364, 582
TfiI	GAWTC	1 cut(s)	710
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	5 cut(s)	158, 392, 395, 427, 516
TspDTI	ATGAA	1 cut(s)	609
TspGWI	ACGGA	1 cut(s)	633
TspRI	CASTG	1 cut(s)	135
VneI	GTGCAC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	10
XspI	CTAG	1 cut(s)	362
ZrmI	AGTACT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.