Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006571

Physical Location & Seq

Genomic Coordinates Reverse (-)

59594170 .. 59596660

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG371300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGAATTCACACGATTTGTGCTGCATAGAGGAGGAAGATGAGAATGGTAGGAAGGCCATGACTTCCACTTCTTATCCCGCCGGCGCCTCTGACTTCCGGTTGTTTGGCCGGCAAGGCTCAGTTCATGATTGCTTTGGTGGTGGCCAAGCTGCTGATGTTCTGTTGTGGAGACGGCGGCGTGTTTCTATCGGTGCTATTGTTGCTGCCACAGTCTCTTGGCTTCTGTTTGAGCGATCTGGATTATCATGCTTATCAATCTGCTCAGATATCTTGCTGATTTTGGTTGTATTGCAATTTCTTCGAGCCAACTATGCTGTTTTCCGAAATAAACAATTGCAAGCAATACCAGAGCTAGTGGTATCAGAGGAAATGGTTAACAATGCCGCAGCATCATTTCGTGTTAAAATCAACAACGTGCTGCTTATGGCTCATGACATCACTATAGGAAAAGATTTTAAATTGTTTTTCAAGGTTGTGGTTTGTCTGTGGCTCATGTCTGTCATTGGCAGCTTTTTCTCTTTCTTCACGCTTGCTTATATTGGTTCAGTCCTGTCCATAACAATTCCTGCCTTGTACAGCAAATATGAAGGGACTGTGGATAAGTATTGCGGAAAGATCCACCGGCAATTTTCAAGGCATTATAAAATCGTGGATGAAAGTGTTTTTAACAGACTTCCCAGAAATACATCCAAAGACAAAGACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

236

Amino Acids

26.55

Weight (kDa)

8.66

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	52 - 206	4.1e-48	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915
fragaria_vesca	FvH4_7g25710 FvH4_7g25710
malus_domestica	MD01G1164300.v1.1 MD01G1164400.v1.1 MD05G1328600.v1.1 MD07G1232000.v1.1
prunus_persica	Prupe.2G262100_v2.0.a1
pyrus_communis	pycom07g20970
rosa_chinensis	RchiOBHm_Chr1g0371931
rosa_laevigata	RLG00000026935
rosa_multiflora	Rmu_sc0001755.1_g000045 Rmu_sc0041892.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285370
rosa_rugosa	Rorug01G0367400
rosa_samantha	Rh1AG377100 Rh1BG340400 Rh1CG353500 Rh1DG371300
rosa_wichuraiana	Rw1G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AccB1I	GGYRCC	1 cut(s)	86
AciI	CCGC	4 cut(s)	81, 178, 387, 612
AclWI	GGATC	1 cut(s)	613
AcoI	YGGCCR	2 cut(s)	109, 145
AcsI	RAATTY	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	578
AgsI	TTSAA	2 cut(s)	472, 636
AluBI	AGCT	3 cut(s)	152, 355, 513
AluI	AGCT	3 cut(s)	152, 355, 513
Alw26I	GTCTC	2 cut(s)	166, 220
AlwI	GGATC	1 cut(s)	613
AoxI	GGCC	3 cut(s)	57, 109, 145
ApeKI	GCWGC	6 cut(s)	24, 152, 206, 389, 421, 510
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	86
BbvI	GCAGC	6 cut(s)	11, 139, 193, 401, 408, 522
BceAI	ACGGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BcoDI	GTCTC	2 cut(s)	166, 220
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	90
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	8 cut(s)	25, 153, 179, 207, 387, 390, 422, 511
BlsI	GCNGC	8 cut(s)	26, 154, 180, 208, 388, 391, 423, 512
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	99
Bse118I	RCCGGY	3 cut(s)	83, 111, 624
BseGI	GGATG	2 cut(s)	661, 689
BseMII	CTCAG	2 cut(s)	135, 279
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	6 cut(s)	11, 139, 193, 401, 408, 522
BshFI	GGCC	3 cut(s)	59, 111, 147
BshNI	GGYRCC	1 cut(s)	86
BsiSI	CCGG	4 cut(s)	84, 100, 112, 625
BslFI	GGGAC	1 cut(s)	607
BsmAI	GTCTC	2 cut(s)	166, 220
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	607
BsnI	GGCC	3 cut(s)	59, 111, 147
Bsp1407I	TGTACA	1 cut(s)	576
Bsp143I	GATC	2 cut(s)	236, 618
BspACI	CCGC	4 cut(s)	81, 178, 387, 612
BspANI	GGCC	3 cut(s)	59, 111, 147
BspCNI	CTCAG	2 cut(s)	134, 278
BspHI	TCATGA	2 cut(s)	127, 433
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	86
BsrFI	RCCGGY	3 cut(s)	83, 111, 624
BsrGI	TGTACA	1 cut(s)	576
BssAI	RCCGGY	3 cut(s)	83, 111, 624
BssMI	GATC	2 cut(s)	236, 618
BssNI	GRCGYC	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	214, 598
BstACI	GRCGYC	1 cut(s)	87
BstAUI	TGTACA	1 cut(s)	576
BstC8I	GCNNGC	4 cut(s)	85, 113, 342, 534
BstDEI	CTNAG	2 cut(s)	121, 265
BstF5I	GGATG	2 cut(s)	661, 689
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	239, 621
BstMAI	GTCTC	2 cut(s)	166, 220
BstMBI	GATC	2 cut(s)	236, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 203, 314
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	6 cut(s)	11, 139, 193, 401, 408, 522
BstX2I	RGATCY	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	618
BsuRI	GGCC	3 cut(s)	59, 111, 147
BtsCI	GGATG	2 cut(s)	661, 689
Cac8I	GCNNGC	4 cut(s)	85, 113, 342, 534
CciI	TCATGA	2 cut(s)	127, 433
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	3 cut(s)	83, 111, 624
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	5 cut(s)	61, 128, 249, 434, 496
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	2 cut(s)	121, 265
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	2 cut(s)	238, 620
DpnII	GATC	2 cut(s)	236, 618
DraI	TTTAAA	1 cut(s)	460
EaeI	YGGCCR	2 cut(s)	109, 145
Eco32I	GATATC	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	271
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	5 cut(s)	64, 131, 252, 437, 499
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	5 cut(s)	60, 127, 248, 433, 495
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	8 cut(s)	25, 153, 179, 207, 387, 390, 422, 511
FokI	GGATG	2 cut(s)	668, 676
Fsp4HI	GCNGC	8 cut(s)	25, 153, 179, 207, 387, 390, 422, 511
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	8 cut(s)	25, 153, 179, 207, 387, 390, 422, 511
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	59, 111, 147
HapII	CCGG	4 cut(s)	84, 100, 112, 625
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	5 cut(s)	64, 131, 252, 437, 499
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HpaI	GTTAAC	1 cut(s)	379
HpaII	CCGG	4 cut(s)	84, 100, 112, 625
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	4 cut(s)	94, 268, 326, 367
Hpy188III	TCNNGA	3 cut(s)	128, 240, 434
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	49, 584
HpyCH4III	ACNGT	2 cut(s)	214, 598
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	27, 295, 340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 203, 314
HpyF3I	CTNAG	2 cut(s)	121, 265
HpySE526I	ACGT	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	5 cut(s)	64, 131, 252, 437, 499
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
KroI	GCCGGC	2 cut(s)	83, 111
KroNI	GCCGGC	2 cut(s)	85, 113
KspAI	GTTAAC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	236, 618
LpnPI	CCDG	9 cut(s)	97, 113, 125, 225, 363, 566, 582, 638, 694
Lsp1109I	GCAGC	6 cut(s)	11, 139, 193, 401, 408, 522
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	417
MalI	GATC	2 cut(s)	238, 620
MboI	GATC	2 cut(s)	236, 618
MboII	GAAGA	3 cut(s)	50, 293, 517
MfeI	CAATTG	1 cut(s)	335
MflI	RGATCY	1 cut(s)	618
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	6 cut(s)	7, 296, 335, 461, 564, 629
MluNI	TGGCCA	1 cut(s)	147
Mly113I	GGCGCC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	25, 28, 100, 361
Mox20I	TGGCCA	1 cut(s)	147
MreI	CGCCGGCG	1 cut(s)	83
MroNI	GCCGGC	2 cut(s)	83, 111
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	5 cut(s)	378, 405, 459, 669, 709
Msp20I	TGGCCA	1 cut(s)	147
MspI	CCGG	4 cut(s)	84, 100, 112, 625
MunI	CAATTG	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	117, 203, 314
NaeI	GCCGGC	2 cut(s)	85, 113
NarI	GGCGCC	1 cut(s)	87
NdeII	GATC	2 cut(s)	236, 618
NgoMIV	GCCGGC	2 cut(s)	83, 111
NlaIII	CATG	5 cut(s)	64, 131, 252, 437, 499
NlaIV	GGNNCC	1 cut(s)	88
PagI	TCATGA	2 cut(s)	127, 433
PdiI	GCCGGC	2 cut(s)	85, 113
PkrI	GCNGC	8 cut(s)	26, 154, 180, 208, 388, 391, 423, 512
PluTI	GGCGCC	1 cut(s)	90
PsiI	TTATAA	1 cut(s)	645
PspN4I	GGNNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	618
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
SaqAI	TTAA	5 cut(s)	378, 405, 459, 669, 709
SatI	GCNGC	8 cut(s)	25, 153, 179, 207, 387, 390, 422, 511
Sau3AI	GATC	2 cut(s)	236, 618
SetI	ASST	5 cut(s)	154, 357, 420, 477, 515
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	1 cut(s)	444
SfoI	GGCGCC	1 cut(s)	88
SgrAI	CRCCGGYG	1 cut(s)	83
Sse9I	AATT	6 cut(s)	7, 296, 335, 461, 564, 629
SsiI	CCGC	4 cut(s)	81, 178, 387, 612
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	214, 598
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	304
TasI	AATT	6 cut(s)	7, 296, 335, 461, 564, 629
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	2 cut(s)	181, 389
Tru1I	TTAA	5 cut(s)	378, 405, 459, 669, 709
Tru9I	TTAA	5 cut(s)	378, 405, 459, 669, 709
TseI	GCWGC	6 cut(s)	24, 152, 206, 389, 421, 510
TspDTI	ATGAA	3 cut(s)	116, 603, 672
XapI	RAATTY	1 cut(s)	7
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.