Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006571

Physical Location & Seq

Genomic Coordinates Reverse (-)

30605703 .. 30608881

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1232000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGAATTCACAAGAATTATGCAGCACAGAGGGAGATGGGGATGGACGGAAGGCGGTGCCTTCCACTTCTTACACCGCCGCATCCTGCGGCGCTGCGTATCGGTTGTTTGGCCGTCAAGAGTCAGTGCACAATTGCTTGGGCGGCGGTCGAGCTGCTGATATTTTGTTGTGGAAGCGGGGGCGTGTTTCCTTTGGCACTATCATTGTTGCTACAGTTTCCTGGCTTGTGTTCGAGCGGTCTGGACTATCATTCTTATCAATTTGTGCAGATGTCTTGCTGATTTTGGTTGTACTCTTATTCCTTTGTGCCAACTATGCTGATTTCAGAAATAAACAACTGCAAACATTACCGGAGCTAGTTGTATCAGAGGAAATGGTTCATAATGTTGCAGCGTCGTTCCGTGTTAAAATCAACAATGTGCTGCTTATGGCTCATGACATCACTCTTGGCAAAGACTTTAGACTATTCTTCAAGGTGGTGGTTTGTTTGTGGCTCTTGTCCGTCATTGGCAGCTTTTTCTCCTTCTTTACGCTTGCCTATATCGGTTCAATCTTGTCGATAACACTTCCAGCCTTATACAGCAAATATGAAGAGACCGTGGATAGGTGTTGCGGAAAGATCCACCGGCAGTTTTCAAAGCATTATAAAATAGTGGATGATGGTGTTTTCAACAAACTTCCCAGAAATGTACCCAAGGACAAAGATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

238

Amino Acids

26.42

Weight (kDa)

8.6

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	53 - 207	1.8e-49	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915
fragaria_vesca	FvH4_7g25710 FvH4_7g25710
malus_domestica	MD01G1164300.v1.1 MD01G1164400.v1.1 MD05G1328600.v1.1 MD07G1232000.v1.1
prunus_persica	Prupe.2G262100_v2.0.a1
pyrus_communis	pycom07g20970
rosa_chinensis	RchiOBHm_Chr1g0371931
rosa_laevigata	RLG00000026935
rosa_multiflora	Rmu_sc0001755.1_g000045 Rmu_sc0041892.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285370
rosa_rugosa	Rorug01G0367400
rosa_samantha	Rh1AG377100 Rh1BG340400 Rh1CG353500 Rh1DG371300
rosa_wichuraiana	Rw1G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AccB1I	GGYRCC	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	238
AciI	CCGC	9 cut(s)	56, 78, 81, 90, 144, 147, 178, 238, 615
AclWI	GGATC	1 cut(s)	616
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	2 cut(s)	294, 693
AfiI	CCNNNNNNNGG	1 cut(s)	606
AgsI	TTSAA	4 cut(s)	475, 552, 639, 673
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	3 cut(s)	155, 358, 516
AluI	AGCT	3 cut(s)	155, 358, 516
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	590
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	616
AoxI	GGCC	1 cut(s)	112
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	6 cut(s)	24, 95, 155, 392, 424, 513
ApoI	RAATTY	1 cut(s)	7
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	6 cut(s)	36, 82, 142, 404, 411, 525
BccI	CCATC	3 cut(s)	32, 38, 656
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	9 cut(s)	25, 81, 91, 96, 145, 156, 393, 425, 514
BlsI	GCNGC	9 cut(s)	26, 82, 92, 97, 146, 157, 394, 426, 515
Bme1390I	CCNGG	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	600, 696
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse118I	RCCGGY	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	600, 696
BseGI	GGATG	3 cut(s)	49, 83, 664
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	6 cut(s)	36, 82, 142, 404, 411, 525
BsgI	GTGCAG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	58
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	353, 628
BslI	CCNNNNNNNGG	1 cut(s)	606
BsmAI	GTCTC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	590
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	621
BspACI	CCGC	9 cut(s)	56, 78, 81, 90, 144, 147, 178, 238, 615
BspANI	GGCC	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	616
BspT107I	GGYRCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	590
BsrBI	CCGCTC	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	627
BssAI	RCCGGY	1 cut(s)	627
BssECI	CCNNGG	2 cut(s)	600, 696
BssMI	GATC	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	217, 601
Bst6I	CTCTTC	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	537
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	3 cut(s)	49, 83, 664
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	624
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	1 cut(s)	621
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 317
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	6 cut(s)	36, 82, 142, 404, 411, 525
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	3 cut(s)	49, 83, 664
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	537
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	627
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	293, 692
CviAII	CATG	1 cut(s)	437
CviJI	RGCY	8 cut(s)	114, 155, 226, 358, 434, 496, 516, 575
CviKI_1	RGCY	8 cut(s)	114, 155, 226, 358, 434, 496, 516, 575
CviQI	GTAC	2 cut(s)	293, 692
DpnI	GATC	1 cut(s)	623
DpnII	GATC	1 cut(s)	621
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	590
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	1 cut(s)	440
FaiI	YATR	9 cut(s)	22, 318, 384, 431, 438, 543, 580, 591, 648
FatI	CATG	1 cut(s)	436
FauI	CCCGC	1 cut(s)	171
Fnu4HI	GCNGC	9 cut(s)	25, 81, 91, 96, 145, 156, 393, 425, 514
FokI	GGATG	3 cut(s)	56, 70, 671
Fsp4HI	GCNGC	9 cut(s)	25, 81, 91, 96, 145, 156, 393, 425, 514
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	9 cut(s)	25, 81, 91, 96, 145, 156, 393, 425, 514
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	353, 628
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	2 cut(s)	122, 707
HpaII	CCGG	2 cut(s)	353, 628
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	329, 370
Hpy188III	TCNNGA	3 cut(s)	119, 243, 437
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	400
HpyAV	CCTTC	3 cut(s)	46, 72, 535
HpyCH4III	ACNGT	2 cut(s)	217, 601
HpyCH4V	TGCA	5 cut(s)	24, 130, 269, 343, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 317
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	621
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	8 cut(s)	100, 208, 228, 235, 366, 585, 641, 697
Lsp1109I	GCAGC	6 cut(s)	36, 82, 142, 404, 411, 525
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	359
MalI	GATC	1 cut(s)	623
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	1 cut(s)	621
MboII	GAAGA	2 cut(s)	463, 605
MfeI	CAATTG	1 cut(s)	133
MflI	RGATCY	1 cut(s)	621
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	4 cut(s)	7, 17, 133, 261
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	2 cut(s)	25, 364
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	408
MspI	CCGG	2 cut(s)	353, 628
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	144, 317
NdeII	GATC	1 cut(s)	621
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	1 cut(s)	60
PagI	TCATGA	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	707
PkrI	GCNGC	9 cut(s)	26, 82, 92, 97, 146, 157, 394, 426, 515
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	621
RsaI	GTAC	2 cut(s)	294, 693
RsaNI	GTAC	2 cut(s)	293, 692
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	9 cut(s)	25, 81, 91, 96, 145, 156, 393, 425, 514
Sau3AI	GATC	1 cut(s)	621
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	5 cut(s)	157, 360, 480, 518, 611
SfaNI	GCATC	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	213
Sse9I	AATT	4 cut(s)	7, 17, 133, 261
SsiI	CCGC	9 cut(s)	56, 78, 81, 90, 144, 147, 178, 238, 615
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	2 cut(s)	217, 601
TaqI	TCGA	3 cut(s)	151, 234, 560
TasI	AATT	4 cut(s)	7, 17, 133, 261
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	3 cut(s)	83, 93, 147
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	6 cut(s)	24, 95, 155, 392, 424, 513
TspDTI	ATGAA	2 cut(s)	371, 606
TspGWI	ACGGA	3 cut(s)	64, 392, 493
TspRI	CASTG	1 cut(s)	132
VneI	GTGCAC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.