Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006571

Physical Location & Seq

Genomic Coordinates Reverse (-)

60949655 .. 60952556

Gene Structure 2902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG377100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGAATTCACACGATTTGTGCTGCATAGAGGAGGAAGATGAGAATGGTAGGAAGGCCATGACTTCCACTTCTTATCCCGCCGGCGCCTCTGACTTCCGATTGTTTGGCCGGCAAGGCTCAGTTCATGATTGCTTTGGTGGTGGCCAAGCTGCTGATGTTCTGTTGTGGAGACGGCGGCGTGTTTCTTTCGGTGCTATTGTTGCCGCCACAGTCTCTTGGCTTCTGTTTGAGCGATCTGGATTATCGTGCTTATCAATCTGCTCAGATATCTTGCTGATTTTGGTTGTATTGCAATTTCTTCGAGCCAACTATGCTGTTTTCCGAAATAAACAATTGCAAGCAATACCAGAGCTAGTGGTATCAGAGGAAATGGTTAACAATGCCGCAGCATCATTTCGTGTTAAAATCAACAACGTGCTGCTTATGGCTCATGACATCACTATAGGAAAAGATTTTAAATTGTTTTTCAAGGTTGTGGTTTGTCTGTGGCTCATGTCTGTCATTGGCAGCTTTTTCTCTTTTTTCACGCTTGCTATTATTGGTATGTGCATGCTACTCCTGGTGTGTCAAACAAATGACCTGCATGATGTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

199

Amino Acids

22.17

Weight (kDa)

6.07

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	52 - 189	2.5e-38	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915 AT3G10915
fragaria_vesca	FvH4_7g25710 FvH4_7g25710
malus_domestica	MD01G1164300.v1.1 MD01G1164400.v1.1 MD05G1328600.v1.1 MD07G1232000.v1.1
prunus_persica	Prupe.2G262100_v2.0.a1
pyrus_communis	pycom07g20970
rosa_chinensis	RchiOBHm_Chr1g0371931
rosa_laevigata	RLG00000026935
rosa_multiflora	Rmu_sc0001755.1_g000045 Rmu_sc0041892.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285370
rosa_rugosa	Rorug01G0367400
rosa_samantha	Rh1AG377100 Rh1BG340400 Rh1CG353500 Rh1DG371300
rosa_wichuraiana	Rw1G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	86
AciI	CCGC	4 cut(s)	81, 178, 207, 387
AcoI	YGGCCR	2 cut(s)	109, 145
AcsI	RAATTY	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	3 cut(s)	152, 355, 513
AluI	AGCT	3 cut(s)	152, 355, 513
Alw26I	GTCTC	2 cut(s)	166, 220
AoxI	GGCC	3 cut(s)	57, 109, 145
ApeKI	GCWGC	5 cut(s)	24, 152, 389, 421, 510
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	86
BbvI	GCAGC	5 cut(s)	11, 139, 401, 408, 522
BceAI	ACGGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	1 cut(s)	563
BcoDI	GTCTC	2 cut(s)	166, 220
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	591
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	8 cut(s)	25, 153, 179, 207, 387, 390, 422, 511
BlsI	GCNGC	8 cut(s)	26, 154, 180, 208, 388, 391, 423, 512
Bme1390I	CCNGG	1 cut(s)	563
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	563
BmsI	GCATC	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	87
Bse118I	RCCGGY	2 cut(s)	83, 111
BseBI	CCWGG	1 cut(s)	563
BseMII	CTCAG	2 cut(s)	135, 279
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	5 cut(s)	11, 139, 401, 408, 522
BshFI	GGCC	3 cut(s)	59, 111, 147
BshNI	GGYRCC	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	84, 112
BsmAI	GTCTC	2 cut(s)	166, 220
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	59, 111, 147
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	4 cut(s)	81, 178, 207, 387
BspANI	GGCC	3 cut(s)	59, 111, 147
BspCNI	CTCAG	2 cut(s)	134, 278
BspHI	TCATGA	2 cut(s)	127, 433
BspLI	GGNNCC	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	86
BsrFI	RCCGGY	2 cut(s)	83, 111
BssAI	RCCGGY	2 cut(s)	83, 111
BssMI	GATC	1 cut(s)	236
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	87
BstC8I	GCNNGC	5 cut(s)	85, 113, 342, 534, 554
BstDEI	CTNAG	2 cut(s)	121, 265
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	2 cut(s)	166, 220
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 203, 314
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	5 cut(s)	11, 139, 401, 408, 522
BsuRI	GGCC	3 cut(s)	59, 111, 147
BveI	ACCTGC	1 cut(s)	591
Cac8I	GCNNGC	5 cut(s)	85, 113, 342, 534, 554
CciI	TCATGA	2 cut(s)	127, 433
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	2 cut(s)	83, 111
CviAII	CATG	6 cut(s)	61, 128, 434, 496, 553, 587
DdeI	CTNAG	2 cut(s)	121, 265
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
DraI	TTTAAA	1 cut(s)	460
EaeI	YGGCCR	2 cut(s)	109, 145
Eco32I	GATATC	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	561
EcoRV	GATATC	1 cut(s)	271
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	6 cut(s)	64, 131, 437, 499, 556, 590
FatI	CATG	6 cut(s)	60, 127, 433, 495, 552, 586
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	8 cut(s)	25, 153, 179, 207, 387, 390, 422, 511
Fsp4HI	GCNGC	8 cut(s)	25, 153, 179, 207, 387, 390, 422, 511
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	8 cut(s)	25, 153, 179, 207, 387, 390, 422, 511
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	59, 111, 147
HapII	CCGG	2 cut(s)	84, 112
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	6 cut(s)	64, 131, 437, 499, 556, 590
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HpaI	GTTAAC	1 cut(s)	379
HpaII	CCGG	2 cut(s)	84, 112
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	5 cut(s)	94, 101, 268, 326, 367
Hpy188III	TCNNGA	3 cut(s)	128, 240, 434
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	5 cut(s)	27, 295, 340, 552, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 203, 314
HpyF3I	CTNAG	2 cut(s)	121, 265
HpySE526I	ACGT	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	6 cut(s)	64, 131, 437, 499, 556, 590
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
KroI	GCCGGC	2 cut(s)	83, 111
KroNI	GCCGGC	2 cut(s)	85, 113
KspAI	GTTAAC	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	97, 125, 225, 363, 548, 575, 596
Lsp1109I	GCAGC	5 cut(s)	11, 139, 401, 408, 522
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	417
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	2 cut(s)	50, 293
MfeI	CAATTG	1 cut(s)	335
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	4 cut(s)	7, 296, 335, 461
MluNI	TGGCCA	1 cut(s)	147
Mly113I	GGCGCC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	25, 28, 100, 361
Mox20I	TGGCCA	1 cut(s)	147
MreI	CGCCGGCG	1 cut(s)	83
MroNI	GCCGGC	2 cut(s)	83, 111
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	3 cut(s)	378, 405, 459
Msp20I	TGGCCA	1 cut(s)	147
MspI	CCGG	2 cut(s)	84, 112
MspR9I	CCNGG	1 cut(s)	563
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	3 cut(s)	117, 203, 314
NaeI	GCCGGC	2 cut(s)	85, 113
NarI	GGCGCC	1 cut(s)	87
NdeII	GATC	1 cut(s)	236
NgoMIV	GCCGGC	2 cut(s)	83, 111
NlaIII	CATG	6 cut(s)	64, 131, 437, 499, 556, 590
NlaIV	GGNNCC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	556
PagI	TCATGA	2 cut(s)	127, 433
PdiI	GCCGGC	2 cut(s)	85, 113
PkrI	GCNGC	8 cut(s)	26, 154, 180, 208, 388, 391, 423, 512
PluTI	GGCGCC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	88
SaqAI	TTAA	3 cut(s)	378, 405, 459
SatI	GCNGC	8 cut(s)	25, 153, 179, 207, 387, 390, 422, 511
Sau3AI	GATC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	563
SetI	ASST	6 cut(s)	154, 357, 420, 477, 515, 585
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	1 cut(s)	444
SfoI	GGCGCC	1 cut(s)	88
SgrAI	CRCCGGYG	1 cut(s)	83
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	4 cut(s)	7, 296, 335, 461
SsiI	CCGC	4 cut(s)	81, 178, 207, 387
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	304
TasI	AATT	4 cut(s)	7, 296, 335, 461
TauI	GCSGC	3 cut(s)	181, 209, 389
Tru1I	TTAA	3 cut(s)	378, 405, 459
Tru9I	TTAA	3 cut(s)	378, 405, 459
TseI	GCWGC	5 cut(s)	24, 152, 389, 421, 510
TspDTI	ATGAA	1 cut(s)	116
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	556
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.