Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010212

Physical Location & Seq

Genomic Coordinates Reverse (-)

3422034 .. 3423455

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGTGTGATTGGAAGCAAGAGCTGTATTTTCTCTGTGGCTAGATACACCCGAGAAAATGAGAAATCTTCTTGCTTCACTTCTATCAACAAGAAATCTTCGCTTGATCTGAGATTTCCCAGAAATCTGGCGGGAGTTTCCTGCAAATTCTCTGGAGAAAATCCAGGAACAAATGGGGTTTCTCTTAGCTCCAAGAACAAAATGGAGGATTACAATACAGCTATGAAGAGATTGATGAGAAGCCCTTATGAATATCATCATGATCTAGGTATGAACTATACATTGATAAGAGATGAACTTATAGTTGGGTCACAGCCACAGAAACCTGAGGACATAGATCACTTGAAGCAGGAACAGAATGTTGCTTACATACTTAACTTGCAGCAGGATAAGGACATTGAGTATTGGGGAATCGATTTGGATTCCATTGTTAGAAGATGTAAGGAGCTTGGAATCCGTCACATGAGAAGGCCTGCTAAAGATTTTGATCCACTTTCGTTGAGAAGCCAACTTCCAAAAGCTGTTTCTTCTTTGGAATGGGCGGTTTCAGAAGGTAAAGGAAGAGTCTATGTGCATTGCTCAGCCGGATTGGGAAGAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAATCTTAACACGGCTTATGACACTTTGGTATCAAAGCGTCCATGTGGGCCTAACAAAGGAGCCATCCGTGGTGCAACATATGATCTGGCTAAGAATGATCCCTGGAAAGAGCCCTTTGAGAGTCTCCCTGAGAACGCATTCGAGGACATTGCAGATTGGGAAAGGAAGTTGATTCAAGAACGTGTTCGGGCCCTCCGTGGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046838 GO:0050308 GO:0071704 GO:1901575 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

282

Amino Acids

32.09

Weight (kDa)

8.72

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	98 - 211	7e-07	Swiss Army Knife protein, DSP-PTPase phosphatase domain
DSPc	PF00782	113 - 232	5.2e-13	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	113 - 210	4.5e-06	Polymorphic toxin system, DSP-PTPase phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10940
fragaria_vesca	FvH4_7g25650 FvH4_7g25650 FvH4_7g25650 FvH4_7g25650
malus_domestica	MD01G1164000.v1.1 MD07G1231700.v1.1
prunus_persica	Prupe.2G261800_v2.0.a1 Prupe.2G261800_v2.0.a1
pyrus_communis	pycom07g20950
rosa_chinensis	RchiOBHm_Chr1g0371831
rosa_laevigata	RLG00000026940
rosa_multiflora	Rmu_co8313211.1_g000001 Rmu_sc0001755.1_g000049
rosa_roxburghii	Rroxscaffold_4G00285420
rosa_rugosa	Rorug01G0366600
rosa_samantha	Rh1AG376600 Rh1BG339900 Rh1CG352900 Rh1DG370900
rosa_wichuraiana	Rw1G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	131, 542
AclWI	GGATC	2 cut(s)	482, 734
AcsI	RAATTY	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	698
AflIII	ACRYGT	1 cut(s)	823
AgsI	TTSAA	2 cut(s)	346, 818
AjnI	CCWGG	3 cut(s)	163, 601, 743
AjuI	GAANNNNNNNTTGG	4 cut(s)	288, 320, 508, 540
AluBI	AGCT	6 cut(s)	24, 189, 221, 448, 521, 599
AluI	AGCT	6 cut(s)	24, 189, 221, 448, 521, 599
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	2 cut(s)	482, 734
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	3 cut(s)	470, 689, 831
ApaI	GGGCCC	1 cut(s)	835
ApeKI	GCWGC	1 cut(s)	382
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	2 cut(s)	779, 825
AspS9I	GGNCC	3 cut(s)	689, 831, 832
AvaI	CYCGRG	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	835
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BanII	GRGCYC	3 cut(s)	601, 756, 835
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	1 cut(s)	713
BceAI	ACGGC	1 cut(s)	669
BcgI	CGANNNNNNTGC	2 cut(s)	773, 807
BciT130I	CCWGG	3 cut(s)	165, 603, 745
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	2 cut(s)	42, 266
BisI	GCNGC	1 cut(s)	383
BlpI	GCTNAGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	384
Bme1390I	CCNGG	3 cut(s)	165, 603, 745
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	3 cut(s)	689, 831, 832
BmiI	GGNNCC	3 cut(s)	703, 833, 844
BmrFI	CCNGG	3 cut(s)	165, 603, 745
BpmI	CTGGAG	2 cut(s)	174, 585
Bpu1102I	GCTNAGC	1 cut(s)	580
Bsa29I	ATCGAT	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	486
BsaJI	CCNNGG	4 cut(s)	602, 709, 743, 838
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	3 cut(s)	574, 612, 789
Bse8I	GATNNNNATC	1 cut(s)	486
BseBI	CCWGG	3 cut(s)	165, 603, 745
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	4 cut(s)	602, 709, 743, 838
BseGI	GGATG	1 cut(s)	705
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	3 cut(s)	574, 612, 789
BseMII	CTCAG	4 cut(s)	101, 318, 594, 762
BseSI	GKGCMC	1 cut(s)	835
BseXI	GCAGC	1 cut(s)	394
BshFI	GGCC	3 cut(s)	472, 691, 833
BshVI	ATCGAT	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	601
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	585
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmAI	GTCTC	1 cut(s)	770
BsmI	GAATGC	1 cut(s)	779
BsnI	GGCC	3 cut(s)	472, 691, 833
BsoBI	CYCGRG	1 cut(s)	51
Bsp120I	GGGCCC	1 cut(s)	831
Bsp1286I	GDGCHC	3 cut(s)	601, 756, 835
Bsp143I	GATC	6 cut(s)	106, 262, 337, 487, 724, 739
Bsp1720I	GCTNAGC	1 cut(s)	580
BspACI	CCGC	2 cut(s)	131, 542
BspANI	GGCC	3 cut(s)	472, 691, 833
BspCNI	CTCAG	4 cut(s)	102, 319, 593, 763
BspDI	ATCGAT	1 cut(s)	414
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	703, 833, 844
BspPI	GGATC	2 cut(s)	482, 734
BspQI	GCTCTTC	1 cut(s)	589
BsrDI	GCAATG	3 cut(s)	574, 612, 789
BssECI	CCNNGG	4 cut(s)	602, 709, 743, 838
BssMI	GATC	6 cut(s)	106, 262, 337, 487, 724, 739
Bst2UI	CCWGG	3 cut(s)	165, 603, 745
Bst6I	CTCTTC	3 cut(s)	221, 556, 589
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	6 cut(s)	110, 185, 327, 580, 732, 771
BstDSI	CCRYGG	2 cut(s)	709, 838
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	1 cut(s)	705
BstKTI	GATC	6 cut(s)	109, 265, 340, 490, 727, 742
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	6 cut(s)	106, 262, 337, 487, 724, 739
BstNI	CCWGG	3 cut(s)	165, 603, 745
BstSCI	CCNGG	3 cut(s)	163, 601, 743
BstSLI	GKGCMC	1 cut(s)	835
BstV1I	GCAGC	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	414
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	472, 691, 833
BsuTUI	ATCGAT	1 cut(s)	414
BtgI	CCRYGG	2 cut(s)	709, 838
BtsCI	GGATG	1 cut(s)	705
Cac8I	GCNNGC	1 cut(s)	474
CciI	TCATGA	1 cut(s)	259
Cfr13I	GGNCC	3 cut(s)	689, 831, 832
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	1 cut(s)	668
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CviAII	CATG	4 cut(s)	260, 463, 640, 684
DdeI	CTNAG	6 cut(s)	110, 185, 327, 580, 732, 771
DpnI	GATC	6 cut(s)	108, 264, 339, 489, 726, 741
DpnII	GATC	6 cut(s)	106, 262, 337, 487, 724, 739
Eam1104I	CTCTTC	3 cut(s)	221, 556, 589
EarI	CTCTTC	3 cut(s)	221, 556, 589
Ecl136II	GAGCTC	1 cut(s)	599
Eco147I	AGGCCT	1 cut(s)	472
Eco24I	GRGCYC	3 cut(s)	601, 756, 835
Eco53kI	GAGCTC	1 cut(s)	599
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRII	CCWGG	3 cut(s)	163, 601, 743
EcoT38I	GRGCYC	3 cut(s)	601, 756, 835
FaeI	CATG	4 cut(s)	263, 466, 643, 687
FatI	CATG	4 cut(s)	259, 462, 639, 683
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	721
Fnu4HI	GCNGC	1 cut(s)	383
FokI	GGATG	1 cut(s)	692
FriOI	GRGCYC	3 cut(s)	601, 756, 835
Fsp4HI	GCNGC	1 cut(s)	383
FspBI	CTAG	2 cut(s)	42, 266
GluI	GCNGC	1 cut(s)	383
GsuI	CTGGAG	2 cut(s)	174, 585
HaeIII	GGCC	3 cut(s)	472, 691, 833
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	1 cut(s)	668
Hin1II	CATG	4 cut(s)	263, 466, 643, 687
HinfI	GANTC	7 cut(s)	411, 422, 453, 564, 643, 763, 814
HpaII	CCGG	1 cut(s)	585
Hpy188I	TCNGA	2 cut(s)	111, 550
Hpy188III	TCNNGA	3 cut(s)	153, 260, 818
HpyAV	CCTTC	2 cut(s)	462, 545
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	5 cut(s)	144, 382, 574, 716, 794
HpyF3I	CTNAG	6 cut(s)	110, 185, 327, 580, 732, 771
HpySE526I	ACGT	1 cut(s)	823
Hsp92II	CATG	4 cut(s)	263, 466, 643, 687
Kzo9I	GATC	6 cut(s)	106, 262, 337, 487, 724, 739
LguI	GCTCTTC	1 cut(s)	589
LmnI	GCTCC	4 cut(s)	194, 445, 604, 701
Lsp1109I	GCAGC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	42, 266
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	3 cut(s)	309, 458, 635
MalI	GATC	6 cut(s)	108, 264, 339, 489, 726, 741
MboI	GATC	6 cut(s)	106, 262, 337, 487, 724, 739
MboII	GAAGA	7 cut(s)	60, 90, 238, 447, 519, 573, 606
MhlI	GDGCHC	3 cut(s)	601, 756, 835
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	573, 772
MnlI	CCTC	4 cut(s)	199, 322, 778, 845
MroXI	GAANNNNTTC	2 cut(s)	779, 825
MseI	TTAA	2 cut(s)	375, 648
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	3 cut(s)	165, 603, 745
Mva1269I	GAATGC	1 cut(s)	779
MvaI	CCWGG	3 cut(s)	165, 603, 745
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	6 cut(s)	106, 262, 337, 487, 724, 739
NlaIII	CATG	4 cut(s)	263, 466, 643, 687
NlaIV	GGNNCC	3 cut(s)	703, 833, 844
NmuCI	GTSAC	3 cut(s)	309, 458, 635
PagI	TCATGA	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	1 cut(s)	835
PctI	GAATGC	1 cut(s)	779
PdmI	GAANNNNTTC	2 cut(s)	779, 825
PfeI	GAWTC	5 cut(s)	411, 422, 453, 643, 814
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	384
PleI	GAGTC	2 cut(s)	572, 771
PpsI	GAGTC	2 cut(s)	572, 771
Psp124BI	GAGCTC	1 cut(s)	601
Psp6I	CCWGG	3 cut(s)	163, 601, 743
PspGI	CCWGG	3 cut(s)	163, 601, 743
PspN4I	GGNNCC	3 cut(s)	703, 833, 844
PspOMI	GGGCCC	1 cut(s)	831
PspPI	GGNCC	3 cut(s)	689, 831, 832
SacI	GAGCTC	1 cut(s)	601
SapI	GCTCTTC	1 cut(s)	589
SaqAI	TTAA	2 cut(s)	375, 648
SatI	GCNGC	1 cut(s)	383
Sau3AI	GATC	6 cut(s)	106, 262, 337, 487, 724, 739
Sau96I	GGNCC	3 cut(s)	689, 831, 832
SchI	GAGTC	2 cut(s)	573, 772
ScrFI	CCNGG	3 cut(s)	165, 603, 745
SduI	GDGCHC	3 cut(s)	601, 756, 835
Sse9I	AATT	1 cut(s)	146
SseBI	AGGCCT	1 cut(s)	472
SsiI	CCGC	2 cut(s)	131, 542
SspMI	CTAG	2 cut(s)	42, 266
SstI	GAGCTC	1 cut(s)	601
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	3 cut(s)	163, 601, 743
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	2 cut(s)	414, 783
TasI	AATT	1 cut(s)	146
TfiI	GAWTC	5 cut(s)	411, 422, 453, 643, 814
Tru1I	TTAA	2 cut(s)	375, 648
Tru9I	TTAA	2 cut(s)	375, 648
TseFI	GTSAC	3 cut(s)	309, 458, 635
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	3 cut(s)	309, 458, 635
TspDTI	ATGAA	5 cut(s)	239, 264, 287, 309, 656
TspGWI	ACGGA	3 cut(s)	446, 698, 827
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmnI	GAANNNNTTC	2 cut(s)	779, 825
XspI	CTAG	2 cut(s)	42, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.