Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010212

Physical Location & Seq

Genomic Coordinates Forward (+)

30593369 .. 30593915

Gene Structure 547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1231700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCATAACATAATCTTTCTTTCCTTGCAGAATGGTCTACCTAAAGCAGTTGCATCGCTCGAATGGGCCGTCTCCAAGGGAAAAGGAAAAGTGTGTGTGCATTGCACTGCTGGTTTGGGAAGGGCTCCGGCTGTTGCAGTTGCTTACATATACTGGTTCCTTGGAATGAATGTGAGTCCTTGTTTCTCTACATATTTCTGCTTCTTTCCATCAAGAAATCGCACAATGCCGGACCATTTTACGGCCGTTTTAGTGTTCCGGACTTCCATCAGTCTTACTTCCAAGAGACCTTGCGGGCCAAGTAAGATGGCGATAAGCGGAGCTACCTACTATCTGACCAAAAAAGATCCATGGAAAGAGCCCCTTGAGAATCTTCCTGAGTATGCATTTGAGGACATAGCAGATTGGGAAAGGAACTTGATTAGAGACCGCGTGTGTTCTCTCCGCGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046838 GO:0050308 GO:0071704 GO:1901575 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

152

Amino Acids

16.96

Weight (kDa)

9.24

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	10 - 63	2.8e-08	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10940
fragaria_vesca	FvH4_7g25650 FvH4_7g25650 FvH4_7g25650 FvH4_7g25650
malus_domestica	MD01G1164000.v1.1 MD07G1231700.v1.1
prunus_persica	Prupe.2G261800_v2.0.a1 Prupe.2G261800_v2.0.a1
pyrus_communis	pycom07g20950
rosa_chinensis	RchiOBHm_Chr1g0371831
rosa_laevigata	RLG00000026940
rosa_multiflora	Rmu_co8313211.1_g000001 Rmu_sc0001755.1_g000049
rosa_roxburghii	Rroxscaffold_4G00285420
rosa_rugosa	Rorug01G0366600
rosa_samantha	Rh1AG376600 Rh1BG339900 Rh1CG352900 Rh1DG370900
rosa_wichuraiana	Rw1G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	2 cut(s)	432, 447
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	5 cut(s)	294, 318, 430, 445, 447
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	241
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw26I	GTCTC	3 cut(s)	76, 280, 420
AlwI	GGATC	1 cut(s)	341
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	3 cut(s)	66, 243, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AspS9I	GGNCC	3 cut(s)	66, 232, 296
AvaII	GGWCC	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	127, 363
BccI	CCATC	3 cut(s)	217, 275, 301
BceAI	ACGGC	3 cut(s)	53, 230, 258
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BcoDI	GTCTC	3 cut(s)	76, 280, 420
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	3 cut(s)	66, 232, 296
BmiI	GGNNCC	2 cut(s)	126, 158
BmsI	GCATC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	386
BsaI	GGTCTC	2 cut(s)	280, 420
BsaJI	CCNNGG	4 cut(s)	75, 160, 350, 445
BsaWI	WCCGGW	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	100
BseAI	TCCGGA	1 cut(s)	258
BseDI	CCNNGG	4 cut(s)	75, 160, 350, 445
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	158
BseX3I	CGGCCG	1 cut(s)	243
Bsh1236I	CGCG	2 cut(s)	432, 447
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	68, 245, 298
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	128, 230, 259
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	3 cut(s)	76, 280, 420
BsmBI	CGTCTC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	68, 245, 298
Bso31I	GGTCTC	2 cut(s)	280, 420
Bsp1286I	GDGCHC	2 cut(s)	127, 363
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	346
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	5 cut(s)	294, 318, 430, 445, 447
BspANI	GGCC	3 cut(s)	68, 245, 298
BspCNI	CTCAG	1 cut(s)	370
BspEI	TCCGGA	1 cut(s)	258
BspFNI	CGCG	2 cut(s)	432, 447
BspLI	GGNNCC	2 cut(s)	126, 158
BspPI	GGATC	1 cut(s)	341
BspTNI	GGTCTC	2 cut(s)	280, 420
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	4 cut(s)	75, 160, 350, 445
BssMI	GATC	1 cut(s)	346
BssT1I	CCWWGG	3 cut(s)	75, 160, 350
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	378
BstDSI	CCRYGG	2 cut(s)	350, 445
BstFNI	CGCG	2 cut(s)	432, 447
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	3 cut(s)	76, 280, 420
BstMBI	GATC	1 cut(s)	346
BstMCI	CGRYCG	1 cut(s)	246
BstUI	CGCG	2 cut(s)	432, 447
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	68, 245, 298
BtgI	CCRYGG	2 cut(s)	350, 445
BtgZI	GCGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	66, 232, 296
Cfr42I	CCGCGG	1 cut(s)	448
CviAII	CATG	1 cut(s)	351
CviJI	RGCY	7 cut(s)	68, 125, 131, 245, 298, 323, 361
CviKI_1	RGCY	7 cut(s)	68, 125, 131, 245, 298, 323, 361
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	3 cut(s)	75, 160, 350
Eco24I	GRGCYC	2 cut(s)	127, 363
Eco31I	GGTCTC	2 cut(s)	280, 420
Eco47I	GGWCC	1 cut(s)	232
Eco52I	CGGCCG	1 cut(s)	243
EcoT14I	CCWWGG	3 cut(s)	75, 160, 350
EcoT22I	ATGCAT	2 cut(s)	6, 388
EcoT38I	GRGCYC	2 cut(s)	127, 363
ErhI	CCWWGG	3 cut(s)	75, 160, 350
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	1 cut(s)	354
FaiI	YATR	8 cut(s)	6, 11, 149, 151, 193, 352, 384, 398
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	1 cut(s)	350
FauI	CCCGC	1 cut(s)	287
FblI	GTMKAC	1 cut(s)	37
FriOI	GRGCYC	2 cut(s)	127, 363
HaeIII	GGCC	3 cut(s)	68, 245, 298
HapII	CCGG	3 cut(s)	128, 230, 259
Hin1II	CATG	1 cut(s)	354
HinfI	GANTC	2 cut(s)	175, 370
HpaII	CCGG	3 cut(s)	128, 230, 259
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	3 cut(s)	213, 259, 377
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	114
HpyCH4V	TGCA	7 cut(s)	4, 28, 53, 100, 105, 137, 386
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	1 cut(s)	354
Kpn2I	TCCGGA	1 cut(s)	258
KspI	CCGCGG	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	130, 320
LpnPI	CCDG	6 cut(s)	96, 139, 141, 243, 272, 390
LweI	GCATC	1 cut(s)	62
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	1 cut(s)	365
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	127, 363
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	1 cut(s)	385
Mph1103I	ATGCAT	2 cut(s)	6, 388
MroI	TCCGGA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	447
MspI	CCGG	3 cut(s)	128, 230, 259
MvnI	CGCG	2 cut(s)	432, 447
NcoI	CCATGG	1 cut(s)	350
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	2 cut(s)	126, 158
NsiI	ATGCAT	2 cut(s)	6, 388
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	126, 158
PspPI	GGNCC	3 cut(s)	66, 232, 296
PsuI	RGATCY	1 cut(s)	346
SacII	CCGCGG	1 cut(s)	448
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	3 cut(s)	66, 232, 296
SchI	GAGTC	1 cut(s)	184
SduI	GDGCHC	2 cut(s)	127, 363
SetI	ASST	4 cut(s)	43, 292, 325, 329
SfaNI	GCATC	1 cut(s)	62
Sfr303I	CCGCGG	1 cut(s)	448
SgrBI	CCGCGG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SsiI	CCGC	5 cut(s)	294, 318, 430, 445, 447
StyI	CCWWGG	3 cut(s)	75, 160, 350
TaqI	TCGA	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	370
TscAI	CASTG	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	37
Zsp2I	ATGCAT	2 cut(s)	6, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.