Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010212

Physical Location & Seq

Genomic Coordinates Reverse (-)

60906497 .. 60909540

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG376600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCCGGTGTTGGGAACAGTTGTTTTAGCTCAGTGTTCACAGCTCCTCTTGAAAAAGATGTGTTCTTGAAGAAGATGAAGAAATGTTCATGCAGTTGTTTAATGGGTTCCAACAACTCCTTGAAATTGAACAAAGTCTATTGTGGATTGCCGGAGAGTGGAATTGAAAAGAAACCCACAAGCAGCACAGCCTCAAATTCAAAGAAAGTGGTTGAGGATTACAACACAGCTATGAAAAGGATGATGAGGAACCCATATGAATATCATCATGATCTGGGCATGAACTACACACTGATAACGGATAACTTGATCGTGGGCTCCCAGCCTCAGAAACCAGAAGATATAGATCACCTGAGAGAAGTAGAGAATGTGGCATACATTCTAAACTTGCAGCAGGACAATGATGTTGAATATTGGGGAATTGACTTGCAGTCGATAATAAAAAGATGTAAAGAAGTCGGAATCCGTCATATGAGGAGGCCTGTAAGCAAATATCCATTGCACTATTTTTTTGACGGTTTTGGAAACCATTCGATGACTAGTAAACGTTTTTCTGGATGTTACAACTTTTGCGCATTTGCCTTACTTTGTTTATGTATCAGGCAAAAGATTTTGATCCAGATTCCTTGCGAAATGGTCTACCGAAAGCAGTTTCATCACTGGAATGGGCTATACATGAGGGAAAAGGAAAAGTGTACGTGCATTGCACTGCTGGATTGGGAAGGGCCCCTGCTGTGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046838 GO:0050308 GO:0071704 GO:1901575 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

247

Amino Acids

28.61

Weight (kDa)

8.71

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10940
fragaria_vesca	FvH4_7g25650 FvH4_7g25650 FvH4_7g25650 FvH4_7g25650
malus_domestica	MD01G1164000.v1.1 MD07G1231700.v1.1
prunus_persica	Prupe.2G261800_v2.0.a1 Prupe.2G261800_v2.0.a1
pyrus_communis	pycom07g20950
rosa_chinensis	RchiOBHm_Chr1g0371831
rosa_laevigata	RLG00000026940
rosa_multiflora	Rmu_co8313211.1_g000001 Rmu_sc0001755.1_g000049
rosa_roxburghii	Rroxscaffold_4G00285420
rosa_rugosa	Rorug01G0366600
rosa_samantha	Rh1AG376600 Rh1BG339900 Rh1CG352900 Rh1DG370900
rosa_wichuraiana	Rw1G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	639
AclI	AACGTT	1 cut(s)	547
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	1 cut(s)	697
AfiI	CCNNNNNNNGG	3 cut(s)	12, 158, 735
AgsI	TTSAA	7 cut(s)	53, 70, 124, 130, 167, 201, 410
AhdI	GACNNNNNGTC	1 cut(s)	430
AhlI	ACTAGT	1 cut(s)	539
AluBI	AGCT	3 cut(s)	30, 44, 230
AluI	AGCT	3 cut(s)	30, 44, 230
AlwI	GGATC	1 cut(s)	610
AoxI	GGCC	3 cut(s)	3, 479, 725
ApaI	GGGCCC	1 cut(s)	729
ApeKI	GCWGC	2 cut(s)	183, 391
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	575
AspS9I	GGNCC	2 cut(s)	725, 726
AsuHPI	GGTGA	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	729
BanII	GRGCYC	2 cut(s)	320, 729
BbvI	GCAGC	2 cut(s)	195, 403
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	1 cut(s)	540
BisI	GCNGC	2 cut(s)	184, 392
BlsI	GCNGC	2 cut(s)	185, 393
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	725, 726
BmiI	GGNNCC	5 cut(s)	109, 251, 319, 727, 728
BsaAI	YACGTR	1 cut(s)	699
BsaBI	GATNNNNATC	2 cut(s)	345, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 158, 735
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	2 cut(s)	497, 702
Bse8I	GATNNNNATC	2 cut(s)	345, 614
BseGI	GGATG	2 cut(s)	246, 563
BseJI	GATNNNNATC	2 cut(s)	345, 614
BseLI	CCNNNNNNNGG	3 cut(s)	12, 158, 735
BseMI	GCAATG	2 cut(s)	497, 702
BseMII	CTCAG	3 cut(s)	45, 341, 344
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	2 cut(s)	36, 490
BseSI	GKGCMC	1 cut(s)	729
BseXI	GCAGC	2 cut(s)	195, 403
BseYI	CCCAGC	1 cut(s)	321
BshFI	GGCC	3 cut(s)	5, 481, 727
BsiSI	CCGG	2 cut(s)	6, 152
BslI	CCNNNNNNNGG	3 cut(s)	12, 158, 735
BsnI	GGCC	3 cut(s)	5, 481, 727
Bsp120I	GGGCCC	1 cut(s)	725
Bsp1286I	GDGCHC	2 cut(s)	320, 729
Bsp143I	GATC	4 cut(s)	271, 309, 346, 615
BspANI	GGCC	3 cut(s)	5, 481, 727
BspCNI	CTCAG	3 cut(s)	44, 340, 345
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	5 cut(s)	109, 251, 319, 727, 728
BspPI	GGATC	1 cut(s)	610
BsrDI	GCAATG	2 cut(s)	497, 702
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	665
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	4 cut(s)	271, 309, 346, 615
Bst4CI	ACNGT	2 cut(s)	20, 518
BstBAI	YACGTR	1 cut(s)	699
BstDEI	CTNAG	3 cut(s)	31, 327, 353
BstF5I	GGATG	2 cut(s)	246, 563
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	4 cut(s)	274, 312, 349, 618
BstMBI	GATC	4 cut(s)	271, 309, 346, 615
BstSLI	GKGCMC	1 cut(s)	729
BstV1I	GCAGC	2 cut(s)	195, 403
BsuRI	GGCC	3 cut(s)	5, 481, 727
BtsCI	GGATG	2 cut(s)	246, 563
BtsI	GCAGTG	1 cut(s)	707
BtsIMutI	CAGTG	4 cut(s)	39, 290, 658, 707
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	575
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	725, 726
Csp6I	GTAC	1 cut(s)	696
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	4 cut(s)	90, 269, 280, 676
CviQI	GTAC	1 cut(s)	696
DdeI	CTNAG	3 cut(s)	31, 327, 353
DpnI	GATC	4 cut(s)	273, 311, 348, 617
DpnII	GATC	4 cut(s)	271, 309, 346, 615
DriI	GACNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	2 cut(s)	320, 729
EcoO109I	RGGNCCY	2 cut(s)	725, 726
EcoT38I	GRGCYC	2 cut(s)	320, 729
FaeI	CATG	4 cut(s)	93, 272, 283, 679
FatI	CATG	4 cut(s)	89, 268, 279, 675
FauNDI	CATATG	2 cut(s)	256, 471
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	2 cut(s)	184, 392
FokI	GGATG	2 cut(s)	253, 570
FriOI	GRGCYC	2 cut(s)	320, 729
Fsp4HI	GCNGC	2 cut(s)	184, 392
FspBI	CTAG	1 cut(s)	540
FspI	TGCGCA	1 cut(s)	574
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	2 cut(s)	184, 392
GsaI	CCCAGC	1 cut(s)	325
HaeIII	GGCC	3 cut(s)	5, 481, 727
HapII	CCGG	2 cut(s)	6, 152
HhaI	GCGC	1 cut(s)	575
Hin1II	CATG	4 cut(s)	93, 272, 283, 679
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HinfI	GANTC	2 cut(s)	462, 622
HpaII	CCGG	2 cut(s)	6, 152
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	4 cut(s)	39, 545, 640, 696
Hpy188I	TCNGA	2 cut(s)	330, 461
Hpy188III	TCNNGA	5 cut(s)	50, 67, 269, 555, 619
Hpy8I	GTNNAC	4 cut(s)	39, 545, 640, 696
HpyAV	CCTTC	1 cut(s)	716
HpyCH4III	ACNGT	2 cut(s)	20, 518
HpyCH4IV	ACGT	2 cut(s)	547, 698
HpyCH4V	TGCA	6 cut(s)	93, 391, 430, 502, 702, 707
HpyF3I	CTNAG	3 cut(s)	31, 327, 353
HpySE526I	ACGT	2 cut(s)	547, 698
Hsp92II	CATG	4 cut(s)	93, 272, 283, 679
HspAI	GCGC	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	271, 309, 346, 615
LmnI	GCTCC	2 cut(s)	49, 323
Lsp1109I	GCAGC	2 cut(s)	195, 403
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	2 cut(s)	547, 698
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	4 cut(s)	273, 311, 348, 617
MboI	GATC	4 cut(s)	271, 309, 346, 615
MboII	GAAGA	4 cut(s)	82, 85, 91, 350
MhlI	GDGCHC	2 cut(s)	320, 729
MluCI	AATT	4 cut(s)	125, 162, 196, 420
MmeI	TCCRAC	2 cut(s)	135, 439
MnlI	CCTC	8 cut(s)	57, 202, 208, 240, 336, 468, 471, 672
MroXI	GAANNNNTTC	1 cut(s)	529
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	230, 663
MspI	CCGG	2 cut(s)	6, 152
NdeI	CATATG	2 cut(s)	256, 471
NdeII	GATC	4 cut(s)	271, 309, 346, 615
NlaIII	CATG	4 cut(s)	93, 272, 283, 679
NlaIV	GGNNCC	5 cut(s)	109, 251, 319, 727, 728
NsbI	TGCGCA	1 cut(s)	574
PagI	TCATGA	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	462, 622
PkrI	GCNGC	2 cut(s)	185, 393
Ppu21I	YACGTR	1 cut(s)	699
Psp1406I	AACGTT	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	5 cut(s)	109, 251, 319, 727, 728
PspOMI	GGGCCC	1 cut(s)	725
PspPI	GGNCC	2 cut(s)	725, 726
RsaI	GTAC	1 cut(s)	697
RsaNI	GTAC	1 cut(s)	696
RseI	CAYNNNNRTG	2 cut(s)	230, 663
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	2 cut(s)	184, 392
Sau3AI	GATC	4 cut(s)	271, 309, 346, 615
Sau96I	GGNCC	2 cut(s)	725, 726
SduI	GDGCHC	2 cut(s)	320, 729
SetI	ASST	6 cut(s)	32, 46, 232, 354, 550, 701
SmiMI	CAYNNNNRTG	2 cut(s)	230, 663
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	4 cut(s)	125, 162, 196, 420
SseBI	AGGCCT	1 cut(s)	481
SspI	AATATT	1 cut(s)	413
SspMI	CTAG	1 cut(s)	540
StuI	AGGCCT	1 cut(s)	481
TaaI	ACNGT	2 cut(s)	20, 518
TaiI	ACGT	2 cut(s)	550, 701
TaqI	TCGA	2 cut(s)	434, 533
TasI	AATT	4 cut(s)	125, 162, 196, 420
TfiI	GAWTC	2 cut(s)	462, 622
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	4 cut(s)	39, 297, 665, 714
TseI	GCWGC	2 cut(s)	183, 391
TspDTI	ATGAA	6 cut(s)	78, 92, 248, 273, 296, 644
TspGWI	ACGGA	2 cut(s)	314, 455
TspRI	CASTG	4 cut(s)	39, 297, 665, 714
XapI	RAATTY	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	529
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.