Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010212

Physical Location & Seq

Genomic Coordinates Forward (+)

48242247 .. 48244504

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0366600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGCAAGAGAACTAGATAACCATGCAATTGGAATTGACCTCGGAACAACCTACTCGTGCGTGGCGGTGTGGCAGCAGGACCATGTAGAAGTGATACTGAACGATCAAGGAAACAGGACCACTCCATCCTATGTTGCTTTTACCGAGACTGAGCAGTTAATAGGTGACGCAGCATTTAACCAAGTCATCAGAAACCCGGCTAACTCCATCTTTGATGCAAAGAGATTGATTGGTAGAAGATTCAGTGACACCTCTGTTCAAATGGACATGAAGCTCTGGCGCTTCAAGGTTACTGAAGGTCCTGGTGATAAACCCCTCATAATGATTACCCACAAGGGTGTGGAGAAACAATTTTCTGCTGATGAAATCTCATCCATGGTTCTAGTAAAGTTGCGGGAAATTGCTGAAGCCTACATTGGTTCAAAGGTGAAAGATGCAGTCATCACAGTGCCTGCTTACTTTAATGATGCACAGCGTCAAGCTACAAAATTTGCCGGTGTGAACGCAGAGCTAAAGGTAATGCAAATTCTCAATGAACCAACAGCAGCAGCCATTGCATATGGGCTTGACAAGAAGGCTGGCGGTGGTGTCTTTGAAGTCAAGGCCACCGCTGGAAACACTCGACTTGGAGGTGAAGATTTCAACAATAGAATGGTTCAACATTGTGTTAAGCAGTTCAAAAAGAAGCATAGTTTGGATGTTAGTGATAACCCTAGAGCACTTAGAAGATTAAGTACCGCATGTGAGAAGGCAAAGAGGGTACTTTCACTTACATATGCAACTGACATTGAAATTGATTGTTTGTATCAGAATACTGATTTTTGTATAAGCATGAGCCGTGCCAAATTCGAAGAACTCAACTCAGATTTTTTCAATCAATGTTTGGAGCCTGTTGAGAAGTGTTTGAGGGATGCTAAGATGCACAGTAGCAGCGTCCATGATGTTGTTCTGGTTGGTGGGTCTTCTAGAATTCCCATTGTTCAACAGCTATTAAAGAATCTGTTCCAGGGGAAGGAGCTTTGCAAGAGCATTAATCCAGATGAGGCTGTGGCATGTGGTGCTGCTGTTTTAGCTGCTTTCTTGAGTGGTGGTGGTAATCTAATTGGAAAGCTTCGAGACTTCACACTCTTGGATGTCACCCCTCTATCACTTGGTGTGGAGACTGCTAAAAGTCATTTCTTGAGCAAAGAAAAAAAAACTAGAAAGCATTTCATGTCTGTTGTGATTCCAAGAAACACCAAAGTACCAGTTATGAAGAAGGAGATTTTTTATACTATGTATGACAATCAAGCTGTTGTTCAGGTCCGCGTTTATGAGGGTGAGAGTAAAACGACCTTAGAGAATAACTTTTTGGGTGCATTTGAGATTGAGGACATTCCTCCTGCTCCTGCGGGTGAAGCTAAATTTGATATTTGCTTTGATATTGATGTAAATGGTATCTTGAGTGTCTCTGCCGAGGACCTGTCCACCGGACAAAAGAAAGGGATCAAATTCAACAGTGAGAGAAGAACTTATGAAGGAATTGAGACTGTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046838 GO:0050308 GO:0071704 GO:1901575 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

512

Amino Acids

56.74

Weight (kDa)

6.77

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 193	2.3e-77	Hsp70 protein
HSP70	PF00012	194 - 502	1.3e-97	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10940
fragaria_vesca	FvH4_7g25650 FvH4_7g25650 FvH4_7g25650 FvH4_7g25650
malus_domestica	MD01G1164000.v1.1 MD07G1231700.v1.1
prunus_persica	Prupe.2G261800_v2.0.a1 Prupe.2G261800_v2.0.a1
pyrus_communis	pycom07g20950
rosa_chinensis	RchiOBHm_Chr1g0371831
rosa_laevigata	RLG00000026940
rosa_multiflora	Rmu_co8313211.1_g000001 Rmu_sc0001755.1_g000049
rosa_roxburghii	Rroxscaffold_4G00285420
rosa_rugosa	Rorug01G0366600
rosa_samantha	Rh1AG376600 Rh1BG339900 Rh1CG352900 Rh1DG370900
rosa_wichuraiana	Rw1G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1308
AciI	CCGC	7 cut(s)	65, 394, 582, 609, 738, 1306, 1391
AclWI	GGATC	1 cut(s)	1493
AcsI	RAATTY	6 cut(s)	488, 525, 845, 969, 1403, 1490
AcuI	CTGAAG	2 cut(s)	315, 426
AdeI	CACNNNGTG	1 cut(s)	1154
AfaI	GTAC	3 cut(s)	736, 762, 1245
AfiI	CCNNNNNNNGG	1 cut(s)	1012
AjnI	CCWGG	2 cut(s)	301, 1005
AjuI	GAANNNNNNNTTGG	6 cut(s)	399, 431, 677, 709, 1334, 1366
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	9 cut(s)	274, 482, 511, 988, 1018, 1073, 1111, 1292, 1400
AluI	AGCT	9 cut(s)	274, 482, 511, 988, 1018, 1073, 1111, 1292, 1400
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	5 cut(s)	140, 1110, 1154, 1453, 1520
AlwI	GGATC	1 cut(s)	1493
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	603
ApeKI	GCWGC	7 cut(s)	73, 170, 545, 548, 930, 1061, 1073
ApoI	RAATTY	6 cut(s)	488, 525, 845, 969, 1403, 1490
AseI	ATTAAT	1 cut(s)	1032
Asp700I	GAANNNNTTC	1 cut(s)	1001
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	5 cut(s)	79, 117, 299, 1303, 1459
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	7 cut(s)	176, 317, 439, 644, 1129, 1331, 1406
AsuII	TTCGAA	1 cut(s)	849
AvaII	GGWCC	5 cut(s)	79, 117, 299, 1303, 1459
BaeI	ACNNNNGTAYC	2 cut(s)	1227, 1260
BarI	GAAGNNNNNNTAC	2 cut(s)	718, 750
BauI	CACGAG	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	954
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	7 cut(s)	85, 182, 557, 560, 942, 1048, 1060
BccI	CCATC	2 cut(s)	133, 215
BceAI	ACGGC	1 cut(s)	822
BciT130I	CCWGG	2 cut(s)	303, 1007
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	5 cut(s)	140, 1110, 1154, 1453, 1520
BfaI	CTAG	5 cut(s)	14, 383, 714, 966, 1200
BfoI	RGCGCY	1 cut(s)	283
BisI	GCNGC	7 cut(s)	74, 171, 546, 549, 931, 1062, 1074
BlsI	GCNGC	7 cut(s)	75, 172, 547, 550, 932, 1063, 1075
Bme1390I	CCNGG	3 cut(s)	197, 303, 1007
Bme18I	GGWCC	5 cut(s)	79, 117, 299, 1303, 1459
BmgT120I	GGNCC	5 cut(s)	79, 117, 299, 1303, 1459
BmiI	GGNNCC	1 cut(s)	888
BmrFI	CCNGG	3 cut(s)	197, 303, 1007
BmsI	GCATC	5 cut(s)	205, 424, 457, 901, 909
BpiI	GAAGAC	1 cut(s)	954
Bpu14I	TTCGAA	1 cut(s)	849
BpuEI	CTTGAG	3 cut(s)	1102, 1201, 1462
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	4 cut(s)	40, 375, 1006, 1455
BsaWI	WCCGGW	1 cut(s)	1469
Bsc4I	CCNNNNNNNGG	1 cut(s)	1012
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	1247
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	303, 1007
BseDI	CCNNGG	4 cut(s)	40, 375, 1006, 1455
BseGI	GGATG	5 cut(s)	125, 371, 703, 916, 1138
BseLI	CCNNNNNNNGG	1 cut(s)	1012
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	141, 876
BseNI	ACTGG	1 cut(s)	1247
BseXI	GCAGC	7 cut(s)	85, 182, 557, 560, 942, 1048, 1060
Bsh1236I	CGCG	1 cut(s)	1308
BshFI	GGCC	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	3 cut(s)	197, 495, 1470
BslI	CCNNNNNNNGG	1 cut(s)	1012
BsmAI	GTCTC	5 cut(s)	140, 1110, 1154, 1453, 1520
BsnI	GGCC	1 cut(s)	605
Bsp119I	TTCGAA	1 cut(s)	849
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	2 cut(s)	103, 1485
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	7 cut(s)	65, 394, 582, 609, 738, 1306, 1391
BspANI	GGCC	1 cut(s)	605
BspCNI	CTCAG	2 cut(s)	142, 875
BspFNI	CGCG	1 cut(s)	1308
BspLI	GGNNCC	1 cut(s)	888
BspPI	GGATC	1 cut(s)	1493
BspT104I	TTCGAA	1 cut(s)	849
BsrDI	GCAATG	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	1247
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	4 cut(s)	40, 375, 1006, 1455
BssMI	GATC	2 cut(s)	103, 1485
BssSI	CACGAG	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	303, 1007
Bst4CI	ACNGT	4 cut(s)	448, 926, 1499, 1531
BstAPI	GCANNNNNTGC	2 cut(s)	554, 1058
BstBI	TTCGAA	1 cut(s)	849
BstC8I	GCNNGC	2 cut(s)	453, 580
BstDEI	CTNAG	5 cut(s)	150, 722, 862, 915, 1336
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	5 cut(s)	125, 371, 703, 916, 1138
BstFNI	CGCG	1 cut(s)	1308
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	2 cut(s)	106, 1488
BstMAI	GTCTC	5 cut(s)	140, 1110, 1154, 1453, 1520
BstMBI	GATC	2 cut(s)	103, 1485
BstMWI	GCNNNNNNNGC	4 cut(s)	554, 1058, 1070, 1397
BstNI	CCWGG	2 cut(s)	303, 1007
BstNSI	RCATGY	2 cut(s)	744, 1056
BstSCI	CCNGG	3 cut(s)	195, 301, 1005
BstUI	CGCG	1 cut(s)	1308
BstV1I	GCAGC	7 cut(s)	85, 182, 557, 560, 942, 1048, 1060
BstV2I	GAAGAC	1 cut(s)	954
BstXI	CCANNNNNNTGG	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	605
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	5 cut(s)	125, 371, 703, 916, 1138
BtsIMutI	CAGTG	3 cut(s)	250, 453, 1504
Cac8I	GCNNGC	2 cut(s)	453, 580
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	5 cut(s)	79, 117, 299, 1303, 1459
CseI	GACGC	3 cut(s)	176, 464, 922
Csp6I	GTAC	3 cut(s)	735, 761, 1244
CviAII	CATG	9 cut(s)	23, 83, 268, 376, 741, 832, 938, 1053, 1213
CviQI	GTAC	3 cut(s)	735, 761, 1244
DdeI	CTNAG	5 cut(s)	150, 722, 862, 915, 1336
DpnI	GATC	2 cut(s)	105, 1487
DpnII	GATC	2 cut(s)	103, 1485
DraIII	CACNNNGTG	1 cut(s)	1154
Eco130I	CCWWGG	1 cut(s)	375
Eco47I	GGWCC	5 cut(s)	79, 117, 299, 1303, 1459
Eco57I	CTGAAG	2 cut(s)	315, 426
EcoO109I	RGGNCCY	2 cut(s)	299, 1459
EcoRI	GAATTC	1 cut(s)	969
EcoRII	CCWGG	2 cut(s)	301, 1005
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	9 cut(s)	26, 86, 271, 379, 744, 835, 941, 1056, 1216
FatI	CATG	9 cut(s)	22, 82, 267, 375, 740, 831, 937, 1052, 1212
FauI	CCCGC	2 cut(s)	387, 1384
FauNDI	CATATG	2 cut(s)	559, 775
Fnu4HI	GCNGC	7 cut(s)	74, 171, 546, 549, 931, 1062, 1074
FokI	GGATG	5 cut(s)	112, 358, 710, 923, 1145
Fsp4HI	GCNGC	7 cut(s)	74, 171, 546, 549, 931, 1062, 1074
FspBI	CTAG	5 cut(s)	14, 383, 714, 966, 1200
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	7 cut(s)	74, 171, 546, 549, 931, 1062, 1074
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	605
HapII	CCGG	3 cut(s)	197, 495, 1470
HgaI	GACGC	3 cut(s)	176, 464, 922
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	9 cut(s)	26, 86, 271, 379, 744, 835, 941, 1056, 1216
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	1109
HinfI	GANTC	3 cut(s)	240, 997, 1225
HpaII	CCGG	3 cut(s)	197, 495, 1470
HphI	GGTGA	7 cut(s)	176, 317, 439, 644, 1129, 1331, 1406
Hpy166II	GTNNAC	2 cut(s)	502, 1467
Hpy188I	TCNGA	4 cut(s)	44, 191, 810, 865
Hpy188III	TCNNGA	6 cut(s)	966, 1037, 1081, 1115, 1180, 1441
Hpy8I	GTNNAC	2 cut(s)	502, 1467
HpyAV	CCTTC	6 cut(s)	290, 568, 742, 1006, 1252, 1511
HpyCH4III	ACNGT	4 cut(s)	448, 926, 1499, 1531
HpyF10VI	GCNNNNNNNGC	4 cut(s)	554, 1058, 1070, 1397
HpyF3I	CTNAG	5 cut(s)	150, 722, 862, 915, 1336
Hsp92II	CATG	9 cut(s)	26, 86, 271, 379, 744, 835, 941, 1056, 1216
HspAI	GCGC	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	103, 1485
LmnI	GCTCC	3 cut(s)	886, 1015, 1390
Lsp1109I	GCAGC	7 cut(s)	85, 182, 557, 560, 942, 1048, 1060
LweI	GCATC	5 cut(s)	205, 424, 457, 901, 909
MaeI	CTAG	5 cut(s)	14, 383, 714, 966, 1200
MaeIII	GTNAC	4 cut(s)	164, 245, 289, 1135
MalI	GATC	2 cut(s)	105, 1487
MboI	GATC	2 cut(s)	103, 1485
MboII	GAAGA	7 cut(s)	249, 647, 738, 863, 954, 1267, 1518
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	1001
MseI	TTAA	7 cut(s)	158, 177, 462, 669, 731, 992, 1032
MslI	CAYNNNNRTG	2 cut(s)	336, 446
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	3 cut(s)	197, 495, 1470
MspR9I	CCNGG	3 cut(s)	197, 303, 1007
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	303, 1007
MvnI	CGCG	1 cut(s)	1308
MwoI	GCNNNNNNNGC	4 cut(s)	554, 1058, 1070, 1397
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	375
NdeI	CATATG	2 cut(s)	559, 775
NdeII	GATC	2 cut(s)	103, 1485
NlaIII	CATG	9 cut(s)	26, 86, 271, 379, 744, 835, 941, 1056, 1216
NlaIV	GGNNCC	1 cut(s)	888
NmeAIII	GCCGAG	1 cut(s)	1480
NmuCI	GTSAC	3 cut(s)	164, 245, 1135
NspI	RCATGY	2 cut(s)	744, 1056
NspV	TTCGAA	1 cut(s)	849
OliI	CACNNNNGTG	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	1001
PfeI	GAWTC	3 cut(s)	240, 997, 1225
PkrI	GCNGC	7 cut(s)	75, 172, 547, 550, 932, 1063, 1075
PpuMI	RGGWCCY	2 cut(s)	299, 1459
PshBI	ATTAAT	1 cut(s)	1032
Psp5II	RGGWCCY	2 cut(s)	299, 1459
Psp6I	CCWGG	2 cut(s)	301, 1005
PspGI	CCWGG	2 cut(s)	301, 1005
PspN4I	GGNNCC	1 cut(s)	888
PspPI	GGNCC	5 cut(s)	79, 117, 299, 1303, 1459
PspPPI	RGGWCCY	2 cut(s)	299, 1459
PstNI	CAGNNNCTG	1 cut(s)	452
RsaI	GTAC	3 cut(s)	736, 762, 1245
RsaNI	GTAC	3 cut(s)	735, 761, 1244
RseI	CAYNNNNRTG	2 cut(s)	336, 446
SaqAI	TTAA	7 cut(s)	158, 177, 462, 669, 731, 992, 1032
SatI	GCNGC	7 cut(s)	74, 171, 546, 549, 931, 1062, 1074
Sau3AI	GATC	2 cut(s)	103, 1485
Sau96I	GGNCC	5 cut(s)	79, 117, 299, 1303, 1459
ScrFI	CCNGG	3 cut(s)	197, 303, 1007
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	5 cut(s)	205, 424, 457, 901, 909
SfuI	TTCGAA	1 cut(s)	849
SinI	GGWCC	5 cut(s)	79, 117, 299, 1303, 1459
SmiMI	CAYNNNNRTG	2 cut(s)	336, 446
SmlI	CTYRAG	3 cut(s)	1081, 1180, 1441
SmoI	CTYRAG	3 cut(s)	1081, 1180, 1441
SsiI	CCGC	7 cut(s)	65, 394, 582, 609, 738, 1306, 1391
SspMI	CTAG	5 cut(s)	14, 383, 714, 966, 1200
StyD4I	CCNGG	3 cut(s)	195, 301, 1005
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	4 cut(s)	448, 926, 1499, 1531
TaqI	TCGA	3 cut(s)	622, 849, 1114
TfiI	GAWTC	3 cut(s)	240, 997, 1225
Tru1I	TTAA	7 cut(s)	158, 177, 462, 669, 731, 992, 1032
Tru9I	TTAA	7 cut(s)	158, 177, 462, 669, 731, 992, 1032
TscAI	CASTG	3 cut(s)	250, 453, 1504
TseFI	GTSAC	3 cut(s)	164, 245, 1135
TseI	GCWGC	7 cut(s)	73, 170, 545, 548, 930, 1061, 1073
Tsp45I	GTSAC	3 cut(s)	164, 245, 1135
TspDTI	ATGAA	6 cut(s)	284, 378, 549, 1201, 1268, 1530
TspRI	CASTG	3 cut(s)	250, 453, 1504
VpaK11BI	GGWCC	5 cut(s)	79, 117, 299, 1303, 1459
VspI	ATTAAT	1 cut(s)	1032
XapI	RAATTY	6 cut(s)	488, 525, 845, 969, 1403, 1490
XbaI	TCTAGA	1 cut(s)	965
XceI	RCATGY	2 cut(s)	744, 1056
XmnI	GAANNNNTTC	1 cut(s)	1001
XspI	CTAG	5 cut(s)	14, 383, 714, 966, 1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.