Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8313211.1

Orthogroup ID

OG0010212

Physical Location & Seq

Genomic Coordinates Reverse (-)

21 .. 917

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8313211.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atggagagccccacattctggctagggatagtcggcttcgtcatcatcgcctactgcctcgtcaaaaacatcaagggcgccatgatctacggcatcgtcttcgtcacggccgtctcgtggttccgtaacacagaagtaacggcgttcccccacactgccgcaggcgacgccgcctacgagtatttcaaaaaagtcttcgacgtacatacgatccaatccacggcgggggccctcagcttcaagagcttcggcaaagggtatttctgggaagccctaattacgttcctctacgtagacatactggacacgacgggtaccctatactccatggcccgtttcgcagggttcatggaccaggacggtaatttcgaaggtcaatacttcgccttcatgtccgacgccacgtcgatcgtggtggggtccttgcttggcacgtcaccggtgacgacgtttatcgagtcatcgacggggataagagaaggcgggaggacgggactgacggcgctgacggctgcgggctactttttctttgcgttattcttcacgccgttattggcttccattccggcttgggcggtgggcccgccgctgatattagtcggcgtgctgatgatgaagtcggtggtggagatagagtgggatgatatgaggcaggcgattccggcgtttgtgactttgatactgatgccgttgacttactcaatagcctatggtttgattggtggcattgggacctttattgttctgcacctgtgggattggagcagagaacttttggtcaagctgggagttttgaaaggtgaacaagaggaagaagaagctgttgggtccaacggggtggtgcatgatcattccaaagaagaccaagcttcaaaagtacttgagcttgaagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0006810 GO:0006863 GO:0008150 GO:0015205 GO:0015851 GO:0015853 GO:0015854 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

298

Amino Acids

32.66

Weight (kDa)

4.73

Isoelectric Point (pI)

25.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10940
fragaria_vesca	FvH4_7g25650 FvH4_7g25650 FvH4_7g25650 FvH4_7g25650
malus_domestica	MD01G1164000.v1.1 MD07G1231700.v1.1
prunus_persica	Prupe.2G261800_v2.0.a1 Prupe.2G261800_v2.0.a1
pyrus_communis	pycom07g20950
rosa_chinensis	RchiOBHm_Chr1g0371831
rosa_laevigata	RLG00000026940
rosa_multiflora	Rmu_co8313211.1_g000001 Rmu_sc0001755.1_g000049
rosa_roxburghii	Rroxscaffold_4G00285420
rosa_rugosa	Rorug01G0366600
rosa_samantha	Rh1AG376600 Rh1BG339900 Rh1CG352900 Rh1DG370900
rosa_wichuraiana	Rw1G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	2 cut(s)	77, 314
AccB7I	CCANNNNNTGG	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	8 cut(s)	159, 171, 224, 483, 515, 575, 584, 587
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	108
AcyI	GRCGYC	3 cut(s)	78, 168, 399
AfaI	GTAC	3 cut(s)	204, 316, 879
AfiI	CCNNNNNNNGG	4 cut(s)	18, 117, 220, 225
AgeI	ACCGGT	1 cut(s)	439
AgsI	TTSAA	5 cut(s)	187, 241, 796, 873, 890
AhdI	GACNNNNNGTC	1 cut(s)	403
AjiI	CACGTC	2 cut(s)	405, 435
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	807, 839
AluBI	AGCT	6 cut(s)	237, 246, 784, 821, 869, 886
AluI	AGCT	6 cut(s)	237, 246, 784, 821, 869, 886
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	4 cut(s)	108, 228, 330, 580
ApaI	GGGCCC	2 cut(s)	232, 584
ApeKI	GCWGC	1 cut(s)	512
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AsiGI	ACCGGT	1 cut(s)	439
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	80, 505
AspS9I	GGNCC	9 cut(s)	228, 229, 331, 352, 420, 580, 581, 732, 828
AsuHPI	GGTGA	3 cut(s)	429, 454, 812
AsuII	TTCGAA	1 cut(s)	369
AvaII	GGWCC	4 cut(s)	352, 420, 732, 828
BaeGI	GKGCMC	2 cut(s)	232, 584
BanI	GGYRCC	2 cut(s)	77, 314
BanII	GRGCYC	3 cut(s)	11, 232, 584
BauI	CACGAG	1 cut(s)	115
BbsI	GAAGAC	3 cut(s)	91, 187, 867
BbvCI	CCTCAGC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	499
BceAI	ACGGC	9 cut(s)	95, 106, 123, 156, 237, 516, 525, 532, 673
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	356
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	23
BfoI	RGCGCY	2 cut(s)	81, 506
BisI	GCNGC	4 cut(s)	159, 171, 513, 587
BlsI	GCNGC	4 cut(s)	160, 172, 514, 588
BmcAI	AGTACT	1 cut(s)	879
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	4 cut(s)	352, 420, 732, 828
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmgBI	CACGTC	2 cut(s)	405, 435
BmgT120I	GGNCC	9 cut(s)	228, 229, 331, 352, 420, 580, 581, 732, 828
BmiI	GGNNCC	9 cut(s)	79, 122, 229, 230, 316, 421, 582, 733, 829
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	102, 675
BpiI	GAAGAC	3 cut(s)	91, 187, 867
Bpu10I	CCTNAGC	1 cut(s)	233
Bpu14I	TTCGAA	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	292
BsaHI	GRCGYC	3 cut(s)	78, 168, 399
BsaJI	CCNNGG	2 cut(s)	219, 327
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 117, 220, 225
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	219, 327
BseGI	GGATG	1 cut(s)	646
BseLI	CCNNNNNNNGG	4 cut(s)	18, 117, 220, 225
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	306
BseSI	GKGCMC	2 cut(s)	232, 584
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	499
BseYI	CCCAGC	1 cut(s)	784
BsgI	GTGCAG	1 cut(s)	731
Bsh1285I	CGRYCG	2 cut(s)	111, 411
BshFI	GGCC	4 cut(s)	110, 230, 332, 582
BshNI	GGYRCC	2 cut(s)	77, 314
BshTI	ACCGGT	1 cut(s)	439
BsiEI	CGRYCG	2 cut(s)	111, 411
BsiSI	CCGG	3 cut(s)	440, 566, 662
BslFI	GGGAC	2 cut(s)	507, 745
BslI	CCNNNNNNNGG	4 cut(s)	18, 117, 220, 225
BsmAI	GTCTC	1 cut(s)	118
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	2 cut(s)	507, 745
BsnI	GGCC	4 cut(s)	110, 230, 332, 582
Bsp119I	TTCGAA	1 cut(s)	369
Bsp120I	GGGCCC	2 cut(s)	228, 580
Bsp1286I	GDGCHC	3 cut(s)	11, 232, 584
Bsp143I	GATC	4 cut(s)	84, 210, 408, 847
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	8 cut(s)	159, 171, 224, 483, 515, 575, 584, 587
BspANI	GGCC	4 cut(s)	110, 230, 332, 582
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	9 cut(s)	79, 122, 229, 230, 316, 421, 582, 733, 829
BspPI	GGATC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	369
BspT107I	GGYRCC	2 cut(s)	77, 314
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	219, 327
BssMI	GATC	4 cut(s)	84, 210, 408, 847
BssNI	GRCGYC	3 cut(s)	78, 168, 399
BssSI	CACGAG	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	362
BstACI	GRCGYC	3 cut(s)	78, 168, 399
BstBAI	YACGTR	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	5 cut(s)	163, 517, 584, 605, 654
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	2 cut(s)	219, 327
BstF5I	GGATG	1 cut(s)	646
BstH2I	RGCGCY	2 cut(s)	81, 506
BstHHI	GCGC	2 cut(s)	80, 505
BstKTI	GATC	4 cut(s)	87, 213, 411, 850
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	4 cut(s)	84, 210, 408, 847
BstMCI	CGRYCG	2 cut(s)	111, 411
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 243, 338, 509, 662
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstSLI	GKGCMC	2 cut(s)	232, 584
BstSNI	TACGTA	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	3 cut(s)	91, 187, 867
BstXI	CCANNNNNNTGG	1 cut(s)	838
BstZI	CGGCCG	1 cut(s)	108
BsuRI	GGCC	4 cut(s)	110, 230, 332, 582
BtgI	CCRYGG	2 cut(s)	219, 327
BtgZI	GCGATG	1 cut(s)	31
BtrI	CACGTC	2 cut(s)	405, 435
BtsCI	GGATG	1 cut(s)	646
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	5 cut(s)	163, 517, 584, 605, 654
CfoI	GCGC	2 cut(s)	80, 505
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	9 cut(s)	228, 229, 331, 352, 420, 580, 581, 732, 828
CseI	GACGC	2 cut(s)	176, 407
Csp6I	GTAC	3 cut(s)	203, 315, 878
CspAI	ACCGGT	1 cut(s)	439
CviAII	CATG	5 cut(s)	82, 328, 349, 391, 845
CviQI	GTAC	3 cut(s)	203, 315, 878
DdeI	CTNAG	1 cut(s)	233
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	4 cut(s)	86, 212, 410, 849
DpnII	GATC	4 cut(s)	84, 210, 408, 847
DriI	GACNNNNNGTC	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	108
EagI	CGGCCG	1 cut(s)	108
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EclXI	CGGCCG	1 cut(s)	108
Eco105I	TACGTA	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	3 cut(s)	11, 232, 584
Eco47I	GGWCC	4 cut(s)	352, 420, 732, 828
Eco52I	CGGCCG	1 cut(s)	108
EcoO109I	RGGNCCY	4 cut(s)	228, 229, 420, 732
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	3 cut(s)	11, 232, 584
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	5 cut(s)	85, 331, 352, 394, 848
FaqI	GGGAC	2 cut(s)	507, 745
FatI	CATG	5 cut(s)	81, 327, 348, 390, 844
FauI	CCCGC	4 cut(s)	217, 476, 508, 591
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	159, 171, 513, 587
FokI	GGATG	1 cut(s)	653
FriOI	GRGCYC	3 cut(s)	11, 232, 584
Fsp4HI	GCNGC	4 cut(s)	159, 171, 513, 587
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	2 cut(s)	79, 504
GluI	GCNGC	4 cut(s)	159, 171, 513, 587
GsaI	CCCAGC	1 cut(s)	788
HaeII	RGCGCY	2 cut(s)	81, 506
HaeIII	GGCC	4 cut(s)	110, 230, 332, 582
HapII	CCGG	3 cut(s)	440, 566, 662
HgaI	GACGC	2 cut(s)	176, 407
HhaI	GCGC	2 cut(s)	80, 505
Hin1I	GRCGYC	3 cut(s)	78, 168, 399
Hin1II	CATG	5 cut(s)	85, 331, 352, 394, 848
Hin6I	GCGC	2 cut(s)	78, 503
HinP1I	GCGC	2 cut(s)	78, 503
HincII	GTYRAC	1 cut(s)	693
HindII	GTYRAC	1 cut(s)	693
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	2 cut(s)	458, 658
HpaII	CCGG	3 cut(s)	440, 566, 662
HphI	GGTGA	3 cut(s)	429, 454, 812
Hpy166II	GTNNAC	3 cut(s)	295, 693, 803
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	3 cut(s)	295, 693, 803
Hpy99I	CGWCG	7 cut(s)	170, 203, 313, 401, 409, 451, 469
HpyAV	CCTTC	3 cut(s)	365, 397, 473
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	6 cut(s)	201, 281, 291, 404, 434, 449
HpyCH4V	TGCA	2 cut(s)	748, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 243, 338, 509, 662
HpyF3I	CTNAG	1 cut(s)	233
HpySE526I	ACGT	6 cut(s)	201, 281, 291, 404, 434, 449
Hsp92I	GRCGYC	3 cut(s)	78, 168, 399
Hsp92II	CATG	5 cut(s)	85, 331, 352, 394, 848
HspAI	GCGC	2 cut(s)	78, 503
KasI	GGCGCC	1 cut(s)	77
KpnI	GGTACC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	4 cut(s)	84, 210, 408, 847
LmnI	GCTCC	1 cut(s)	762
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	102, 675
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	6 cut(s)	201, 281, 291, 404, 434, 449
MaeIII	GTNAC	6 cut(s)	103, 125, 136, 435, 442, 670
MalI	GATC	4 cut(s)	86, 212, 410, 849
MboI	GATC	4 cut(s)	84, 210, 408, 847
MboII	GAAGA	6 cut(s)	91, 187, 532, 824, 827, 872
MhlI	GDGCHC	3 cut(s)	11, 232, 584
MluCI	AATT	2 cut(s)	276, 364
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	420, 855
MnlI	CCTC	6 cut(s)	68, 242, 296, 480, 642, 802
MspA1I	CMGCKG	1 cut(s)	589
MspI	CCGG	3 cut(s)	440, 566, 662
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	5 cut(s)	167, 243, 338, 509, 662
NarI	GGCGCC	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	4 cut(s)	84, 210, 408, 847
NlaIII	CATG	5 cut(s)	85, 331, 352, 394, 848
NlaIV	GGNNCC	9 cut(s)	79, 122, 229, 230, 316, 421, 582, 733, 829
NmuCI	GTSAC	4 cut(s)	103, 435, 442, 670
NspV	TTCGAA	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	4 cut(s)	108, 113, 174, 366
PfeI	GAWTC	1 cut(s)	658
PflMI	CCANNNNNTGG	1 cut(s)	18
PinAI	ACCGGT	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	160, 172, 514, 588
Ple19I	CGATCG	1 cut(s)	411
PleI	GAGTC	1 cut(s)	466
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	292
PpuMI	RGGWCCY	2 cut(s)	420, 732
Psp5II	RGGWCCY	2 cut(s)	420, 732
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	9 cut(s)	79, 122, 229, 230, 316, 421, 582, 733, 829
PspOMI	GGGCCC	2 cut(s)	228, 580
PspPI	GGNCC	9 cut(s)	228, 229, 331, 352, 420, 580, 581, 732, 828
PspPPI	RGGWCCY	2 cut(s)	420, 732
PvuI	CGATCG	1 cut(s)	411
RsaI	GTAC	3 cut(s)	204, 316, 879
RsaNI	GTAC	3 cut(s)	203, 315, 878
SatI	GCNGC	4 cut(s)	159, 171, 513, 587
Sau3AI	GATC	4 cut(s)	84, 210, 408, 847
Sau96I	GGNCC	9 cut(s)	228, 229, 331, 352, 420, 580, 581, 732, 828
ScaI	AGTACT	1 cut(s)	879
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	3 cut(s)	11, 232, 584
SfaNI	GCATC	2 cut(s)	102, 675
SfoI	GGCGCC	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	369
SgrAI	CRCCGGYG	1 cut(s)	439
SinI	GGWCC	4 cut(s)	352, 420, 732, 828
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SnaBI	TACGTA	1 cut(s)	292
Sse9I	AATT	2 cut(s)	276, 364
SsiI	CCGC	8 cut(s)	159, 171, 224, 483, 515, 575, 584, 587
SspDI	GGCGCC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	6 cut(s)	204, 284, 294, 407, 437, 452
TaqI	TCGA	5 cut(s)	198, 369, 407, 456, 464
TasI	AATT	2 cut(s)	276, 364
TatI	WGTACW	1 cut(s)	877
TauI	GCSGC	3 cut(s)	161, 173, 589
TfiI	GAWTC	1 cut(s)	658
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	4 cut(s)	103, 435, 442, 670
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	4 cut(s)	103, 435, 442, 670
TspDTI	ATGAA	3 cut(s)	337, 379, 629
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	18
VpaK11BI	GGWCC	4 cut(s)	352, 420, 732, 828
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.