Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010212

Physical Location & Seq

Genomic Coordinates Forward (+)

26868056 .. 26871022

Gene Structure 2967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1164000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCAAGTGTTGGCAACAGTTGCTTTGGCTCAGTCTTCGTAGCTCCGCTTGAAAACGATGTGTTTTTTAAGAAGATTAAGAAATCTCCATGCAATTTTTTAATGGGATTCAATAATTCTTCCAAATCCAACAAAATTTATTGTGGATTGCCAGAAAACCCCACGAGCAGCAGACCCTCCATTTCAAAGAACACGGTGGAGGAATACAACGCTGCAATGAAGAAGATGATGAGGAACCCCTATGAGTACCACCATGATCTGGGCATGAACTACACACTGATAACTGATGACTTGATAGTCGGCTCGCAGCCTCAGAAACCGGAAGATATAGACCACCTGAAGGAAGAAGAGAATGTGGCATACATTTTAAACTTGCAGCAGGACACGGATGTTGAATATTGGGGAGTTGACTTGCAGTCGATAATAAAAAGGTGTAAAGAACTTGGAATCCGGCACATGAGGAGACCCGCAAAGGATTTCGATCCAGATTCCTTGCGAAATGGTCTACCTAAAGCAGTTTCATCACTCGAATGGGCCATCTCTGAGGGAAAAGGAAAAGTGTATGTGCATTGCACTGCTGGATTGGGAAGGGCCCCGGCTGTTGCAATTGCCTACATGTACTGGTTCCTTGGAATGAATCTGAATGCAGCATACGATGAGCTAACTTCCAAGAGACCTTGCGGGCCAAATAAGAGGGCAATACGCGGAGCTACCTATGATCTGACCAAAACTGACCCATGGAAGGAACCCTTTGAGAGTCTTCCTGAATATGCTTTTGAGAATTTAGCAGACTGGGAAAGGAACTTGATTAGAGACCGCGTCTATTCTCTCCGTTCCCATGCCATTAAAAGCTCAACATCGTTGATCAAGGCAATGCAGCAGAGAGTTGGTACTGGGGATAGATGGCGGATTAATTTCTGGGCAATGCTCGACGCTGGACGCCTATCAAGCATACTCGTCATTTTTTTCAATCTACCCTGTGCGATCATATATTATTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046838 GO:0050308 GO:0071704 GO:1901575 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

335

Amino Acids

38.01

Weight (kDa)

8.53

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	97 - 217	2.9e-06	Swiss Army Knife protein, DSP-PTPase phosphatase domain
DSPc	PF00782	111 - 227	6.6e-15	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	111 - 208	7e-06	Polymorphic toxin system, DSP-PTPase phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10940
fragaria_vesca	FvH4_7g25650 FvH4_7g25650 FvH4_7g25650 FvH4_7g25650
malus_domestica	MD01G1164000.v1.1 MD07G1231700.v1.1
prunus_persica	Prupe.2G261800_v2.0.a1 Prupe.2G261800_v2.0.a1
pyrus_communis	pycom07g20950
rosa_chinensis	RchiOBHm_Chr1g0371831
rosa_laevigata	RLG00000026940
rosa_multiflora	Rmu_co8313211.1_g000001 Rmu_sc0001755.1_g000049
rosa_roxburghii	Rroxscaffold_4G00285420
rosa_rugosa	Rorug01G0366600
rosa_samantha	Rh1AG376600 Rh1BG339900 Rh1CG352900 Rh1DG370900
rosa_wichuraiana	Rw1G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	505
AccII	CGCG	2 cut(s)	705, 819
AciI	CCGC	6 cut(s)	47, 468, 681, 705, 817, 907
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	2 cut(s)	135, 781
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	940
AfaI	GTAC	3 cut(s)	248, 620, 892
AfiI	CCNNNNNNNGG	3 cut(s)	259, 340, 742
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	5 cut(s)	53, 112, 186, 395, 970
AhdI	GACNNNNNGTC	1 cut(s)	415
AloI	GAACNNNNNNTCC	2 cut(s)	432, 464
AluBI	AGCT	5 cut(s)	44, 661, 710, 852, 1001
AluI	AGCT	5 cut(s)	44, 661, 710, 852, 1001
Alw26I	GTCTC	3 cut(s)	457, 667, 807
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	3 cut(s)	534, 591, 683
ApaI	GGGCCC	1 cut(s)	595
ApeKI	GCWGC	6 cut(s)	168, 212, 307, 376, 647, 877
ApoI	RAATTY	2 cut(s)	135, 781
AseI	ATTAAT	1 cut(s)	912
AspS9I	GGNCC	4 cut(s)	534, 591, 592, 683
AsuC2I	CCSGG	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	595
BauI	CACGAG	1 cut(s)	163
BbsI	GAAGAC	2 cut(s)	28, 752
BbvI	GCAGC	6 cut(s)	180, 199, 319, 388, 659, 889
BccI	CCATC	2 cut(s)	545, 897
BclI	TGATCA	1 cut(s)	864
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	3 cut(s)	457, 667, 807
BisI	GCNGC	6 cut(s)	169, 213, 308, 377, 648, 878
BlsI	GCNGC	6 cut(s)	170, 214, 309, 378, 649, 879
Bme1390I	CCNGG	1 cut(s)	596
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmgT120I	GGNCC	4 cut(s)	534, 591, 592, 683
BmiI	GGNNCC	5 cut(s)	236, 593, 594, 626, 747
BmrFI	CCNGG	1 cut(s)	596
BmrI	ACTGGG	2 cut(s)	802, 903
BmuI	ACTGGG	2 cut(s)	802, 903
BpiI	GAAGAC	2 cut(s)	28, 752
BpuMI	CCSGG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	940
BsaI	GGTCTC	3 cut(s)	457, 667, 807
BsaJI	CCNNGG	3 cut(s)	594, 628, 737
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 340, 742
Bse1I	ACTGG	3 cut(s)	626, 797, 898
Bse3DI	GCAATG	4 cut(s)	222, 568, 879, 930
Bse8I	GATNNNNATC	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	594, 628, 737
BseGI	GGATG	1 cut(s)	394
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	3 cut(s)	259, 340, 742
BseMI	GCAATG	4 cut(s)	222, 568, 879, 930
BseMII	CTCAG	3 cut(s)	45, 326, 534
BseNI	ACTGG	3 cut(s)	626, 797, 898
BseRI	GAGGAG	1 cut(s)	475
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	6 cut(s)	180, 199, 319, 388, 659, 889
Bsh1236I	CGCG	2 cut(s)	705, 819
BshFI	GGCC	3 cut(s)	536, 593, 685
BsiSI	CCGG	3 cut(s)	320, 451, 596
BslI	CCNNNNNNNGG	3 cut(s)	259, 340, 742
BsmAI	GTCTC	3 cut(s)	457, 667, 807
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	3 cut(s)	536, 593, 685
Bso31I	GGTCTC	3 cut(s)	457, 667, 807
Bsp120I	GGGCCC	1 cut(s)	591
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp143I	GATC	5 cut(s)	256, 481, 718, 864, 984
Bsp19I	CCATGG	1 cut(s)	737
BspACI	CCGC	6 cut(s)	47, 468, 681, 705, 817, 907
BspANI	GGCC	3 cut(s)	536, 593, 685
BspCNI	CTCAG	3 cut(s)	44, 325, 535
BspFNI	CGCG	2 cut(s)	705, 819
BspLI	GGNNCC	5 cut(s)	236, 593, 594, 626, 747
BspPI	GGATC	1 cut(s)	476
BspTNI	GGTCTC	3 cut(s)	457, 667, 807
BsrDI	GCAATG	4 cut(s)	222, 568, 879, 930
BsrI	ACTGG	3 cut(s)	626, 797, 898
BssECI	CCNNGG	3 cut(s)	594, 628, 737
BssMI	GATC	5 cut(s)	256, 481, 718, 864, 984
BssNI	GRCGYC	1 cut(s)	940
BssSI	CACGAG	1 cut(s)	163
BssT1I	CCWWGG	2 cut(s)	628, 737
Bst2BI	CACGAG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	20, 196
Bst6I	CTCTTC	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	940
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	305, 683
BstDEI	CTNAG	4 cut(s)	31, 312, 543, 1002
BstDSI	CCRYGG	1 cut(s)	737
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	2 cut(s)	705, 819
BstKTI	GATC	5 cut(s)	259, 484, 721, 867, 987
BstMAI	GTCTC	3 cut(s)	457, 667, 807
BstMBI	GATC	5 cut(s)	256, 481, 718, 864, 984
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 948
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	595
BstUI	CGCG	2 cut(s)	705, 819
BstV1I	GCAGC	6 cut(s)	180, 199, 319, 388, 659, 889
BstV2I	GAAGAC	2 cut(s)	28, 752
BsuRI	GGCC	3 cut(s)	536, 593, 685
BtgI	CCRYGG	1 cut(s)	737
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	275, 573
Cac8I	GCNNGC	2 cut(s)	305, 683
Cfr13I	GGNCC	4 cut(s)	534, 591, 592, 683
CseI	GACGC	3 cut(s)	808, 941, 948
Csp6I	GTAC	3 cut(s)	247, 619, 891
CviAII	CATG	7 cut(s)	90, 254, 265, 457, 616, 738, 839
CviQI	GTAC	3 cut(s)	247, 619, 891
DdeI	CTNAG	4 cut(s)	31, 312, 543, 1002
DpnI	GATC	5 cut(s)	258, 483, 720, 866, 986
DpnII	GATC	5 cut(s)	256, 481, 718, 864, 984
DraI	TTTAAA	1 cut(s)	369
DrdI	GACNNNNNNGTC	1 cut(s)	296
DriI	GACNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	342
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	922
Eco130I	CCWWGG	2 cut(s)	628, 737
Eco24I	GRGCYC	1 cut(s)	595
Eco31I	GGTCTC	3 cut(s)	457, 667, 807
Eco57I	CTGAAG	1 cut(s)	359
EcoO109I	RGGNCCY	2 cut(s)	591, 592
EcoT14I	CCWWGG	2 cut(s)	628, 737
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	2 cut(s)	628, 737
FaeI	CATG	7 cut(s)	93, 257, 268, 460, 619, 741, 842
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FatI	CATG	7 cut(s)	89, 253, 264, 456, 615, 737, 838
FauI	CCCGC	2 cut(s)	475, 674
FbaI	TGATCA	1 cut(s)	864
FblI	GTMKAC	1 cut(s)	505
Fnu4HI	GCNGC	6 cut(s)	169, 213, 308, 377, 648, 878
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	6 cut(s)	169, 213, 308, 377, 648, 878
GluI	GCNGC	6 cut(s)	169, 213, 308, 377, 648, 878
HaeIII	GGCC	3 cut(s)	536, 593, 685
HapII	CCGG	3 cut(s)	320, 451, 596
HgaI	GACGC	3 cut(s)	808, 941, 948
Hin1I	GRCGYC	1 cut(s)	940
Hin1II	CATG	7 cut(s)	93, 257, 268, 460, 619, 741, 842
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	5 cut(s)	108, 447, 488, 637, 757
HpaII	CCGG	3 cut(s)	320, 451, 596
Hpy166II	GTNNAC	2 cut(s)	409, 506
Hpy188I	TCNGA	4 cut(s)	315, 544, 642, 723
Hpy188III	TCNNGA	2 cut(s)	485, 764
Hpy8I	GTNNAC	2 cut(s)	409, 506
Hpy99I	CGWCG	1 cut(s)	935
HpyAV	CCTTC	3 cut(s)	334, 582, 736
HpyCH4III	ACNGT	2 cut(s)	20, 196
HpyCH4V	TGCA	9 cut(s)	93, 215, 376, 415, 568, 573, 605, 647, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 948
HpyF3I	CTNAG	4 cut(s)	31, 312, 543, 1002
Hsp92I	GRCGYC	1 cut(s)	940
Hsp92II	CATG	7 cut(s)	93, 257, 268, 460, 619, 741, 842
Ksp22I	TGATCA	1 cut(s)	864
Kzo9I	GATC	5 cut(s)	256, 481, 718, 864, 984
LmnI	GCTCC	2 cut(s)	49, 707
Lsp1109I	GCAGC	6 cut(s)	180, 199, 319, 388, 659, 889
MalI	GATC	5 cut(s)	258, 483, 720, 866, 986
MboI	GATC	5 cut(s)	256, 481, 718, 864, 984
MboII	GAAGA	9 cut(s)	28, 85, 111, 232, 235, 335, 356, 359, 752
MfeI	CAATTG	1 cut(s)	606
MhlI	GDGCHC	1 cut(s)	595
MluCI	AATT	6 cut(s)	94, 115, 135, 606, 781, 913
MlyI	GAGTC	1 cut(s)	766
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	7 cut(s)	187, 193, 225, 321, 453, 538, 687
MseI	TTAA	6 cut(s)	69, 78, 101, 368, 846, 912
MslI	CAYNNNNRTG	1 cut(s)	529
MspI	CCGG	3 cut(s)	320, 451, 596
MspR9I	CCNGG	1 cut(s)	596
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	649
MvnI	CGCG	2 cut(s)	705, 819
MwoI	GCNNNNNNNGC	2 cut(s)	21, 948
NciI	CCSGG	1 cut(s)	596
NcoI	CCATGG	1 cut(s)	737
NdeII	GATC	5 cut(s)	256, 481, 718, 864, 984
NlaIII	CATG	7 cut(s)	93, 257, 268, 460, 619, 741, 842
NlaIV	GGNNCC	5 cut(s)	236, 593, 594, 626, 747
NspI	RCATGY	1 cut(s)	619
PciI	ACATGT	1 cut(s)	615
PctI	GAATGC	1 cut(s)	649
PfeI	GAWTC	4 cut(s)	108, 447, 488, 637
PflFI	GACNNNGTC	1 cut(s)	818
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	6 cut(s)	170, 214, 309, 378, 649, 879
PleI	GAGTC	1 cut(s)	765
PpsI	GAGTC	1 cut(s)	765
PscI	ACATGT	1 cut(s)	615
PshBI	ATTAAT	1 cut(s)	912
PspN4I	GGNNCC	5 cut(s)	236, 593, 594, 626, 747
PspOMI	GGGCCC	1 cut(s)	591
PspPI	GGNCC	4 cut(s)	534, 591, 592, 683
PsyI	GACNNNGTC	1 cut(s)	818
RsaI	GTAC	3 cut(s)	248, 620, 892
RsaNI	GTAC	3 cut(s)	247, 619, 891
RseI	CAYNNNNRTG	1 cut(s)	529
SaqAI	TTAA	6 cut(s)	69, 78, 101, 368, 846, 912
SatI	GCNGC	6 cut(s)	169, 213, 308, 377, 648, 878
Sau3AI	GATC	5 cut(s)	256, 481, 718, 864, 984
Sau96I	GGNCC	4 cut(s)	534, 591, 592, 683
SchI	GAGTC	1 cut(s)	766
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	529
Sse9I	AATT	6 cut(s)	94, 115, 135, 606, 781, 913
SsiI	CCGC	6 cut(s)	47, 468, 681, 705, 817, 907
SspI	AATATT	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	2 cut(s)	628, 737
TaaI	ACNGT	2 cut(s)	20, 196
TaqI	TCGA	4 cut(s)	419, 480, 528, 930
TasI	AATT	6 cut(s)	94, 115, 135, 606, 781, 913
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	4 cut(s)	108, 447, 488, 637
Tru1I	TTAA	6 cut(s)	69, 78, 101, 368, 846, 912
Tru9I	TTAA	6 cut(s)	69, 78, 101, 368, 846, 912
TscAI	CASTG	2 cut(s)	282, 580
TseI	GCWGC	6 cut(s)	168, 212, 307, 376, 647, 877
TspDTI	ATGAA	4 cut(s)	233, 281, 510, 650
TspGWI	ACGGA	2 cut(s)	401, 821
TspRI	CASTG	2 cut(s)	282, 580
Tth111I	GACNNNGTC	1 cut(s)	818
Van91I	CCANNNNNTGG	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	912
XapI	RAATTY	2 cut(s)	135, 781
XceI	RCATGY	1 cut(s)	619
XmiI	GTMKAC	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.