Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010212

Physical Location & Seq

Genomic Coordinates Forward (+)

22874964 .. 22875756

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACTTGGAATCCGGCACATGAGGAGACCATCGCAAAGGATTTCGATCCAGATTCCTTGCGGAATGGTCTACCTAAAGCAGTTTCATCGCTCGCATGGGCCATCTCCAAGGGAAAAGGAAAAGTGTGTGCGCATTGCACTGCTGGTTTGGGAAGGGCTCCGGCTGTTGCAGTTGCTTACATATACTGGTTCCTTGGAATGAATCTGAATGCAGCATATGATGCTCTTACTTCCAAGAGACCTTGCGGGCCAAGTAAGAGGGCGATACGCGGAGCTACCTACGATCTGACCAAAAAAGATCCATGGAAAGAGCCCCATGAGAATCTTCCTGAGTATGCATTTGAGGACATAGCAGATTGGGAAAGGAACTTGATTAGAGACCGCGTGTGTTCTCTCCACGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046838 GO:0050308 GO:0071704 GO:1901575 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

136

Amino Acids

14.99

Weight (kDa)

8.35

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	13 - 82	9.6e-11	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10940
fragaria_vesca	FvH4_7g25650 FvH4_7g25650 FvH4_7g25650 FvH4_7g25650
malus_domestica	MD01G1164000.v1.1 MD07G1231700.v1.1
prunus_persica	Prupe.2G261800_v2.0.a1 Prupe.2G261800_v2.0.a1
pyrus_communis	pycom07g20950
rosa_chinensis	RchiOBHm_Chr1g0371831
rosa_laevigata	RLG00000026940
rosa_multiflora	Rmu_co8313211.1_g000001 Rmu_sc0001755.1_g000049
rosa_roxburghii	Rroxscaffold_4G00285420
rosa_rugosa	Rorug01G0366600
rosa_samantha	Rh1AG376600 Rh1BG339900 Rh1CG352900 Rh1DG370900
rosa_wichuraiana	Rw1G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	70
AccII	CGCG	2 cut(s)	270, 384
AciI	CCGC	4 cut(s)	61, 246, 270, 382
AclWI	GGATC	2 cut(s)	41, 293
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	20, 232, 372
AlwI	GGATC	2 cut(s)	41, 293
AoxI	GGCC	2 cut(s)	99, 248
ApeKI	GCWGC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	99, 248
BanII	GRGCYC	2 cut(s)	160, 315
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	2 cut(s)	38, 110
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BcoDI	GTCTC	3 cut(s)	20, 232, 372
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	99, 248
BmiI	GGNNCC	2 cut(s)	159, 191
BmsI	GCATC	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	3 cut(s)	20, 232, 372
BsaJI	CCNNGG	4 cut(s)	108, 193, 302, 397
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	133
Bse8I	GATNNNNATC	1 cut(s)	45
BseDI	CCNNGG	4 cut(s)	108, 193, 302, 397
BseJI	GATNNNNATC	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	224
Bsh1236I	CGCG	2 cut(s)	270, 384
BshFI	GGCC	2 cut(s)	101, 250
BsiSI	CCGG	2 cut(s)	14, 161
BsmAI	GTCTC	3 cut(s)	20, 232, 372
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	101, 250
Bso31I	GGTCTC	3 cut(s)	20, 232, 372
Bsp1286I	GDGCHC	2 cut(s)	160, 315
Bsp143I	GATC	3 cut(s)	46, 283, 298
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	4 cut(s)	61, 246, 270, 382
BspANI	GGCC	2 cut(s)	101, 250
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	270, 384
BspLI	GGNNCC	2 cut(s)	159, 191
BspPI	GGATC	2 cut(s)	41, 293
BspTNI	GGTCTC	3 cut(s)	20, 232, 372
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	4 cut(s)	108, 193, 302, 397
BssMI	GATC	3 cut(s)	46, 283, 298
BssT1I	CCWWGG	3 cut(s)	108, 193, 302
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	93, 248
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	2 cut(s)	302, 397
BstFNI	CGCG	2 cut(s)	270, 384
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	3 cut(s)	49, 286, 301
BstMAI	GTCTC	3 cut(s)	20, 232, 372
BstMBI	GATC	3 cut(s)	46, 283, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstUI	CGCG	2 cut(s)	270, 384
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	101, 250
BtgI	CCRYGG	2 cut(s)	302, 397
BtgZI	GCGATG	2 cut(s)	16, 72
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	93, 248
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	99, 248
CspCI	CAANNNNNGTGG	1 cut(s)	386
CviAII	CATG	4 cut(s)	20, 96, 303, 317
CviJI	RGCY	6 cut(s)	101, 158, 164, 250, 275, 313
CviKI_1	RGCY	6 cut(s)	101, 158, 164, 250, 275, 313
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	48, 285, 300
DpnII	GATC	3 cut(s)	46, 283, 298
Eco130I	CCWWGG	3 cut(s)	108, 193, 302
Eco24I	GRGCYC	2 cut(s)	160, 315
Eco31I	GGTCTC	3 cut(s)	20, 232, 372
EcoT14I	CCWWGG	3 cut(s)	108, 193, 302
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	2 cut(s)	160, 315
ErhI	CCWWGG	3 cut(s)	108, 193, 302
FaeI	CATG	4 cut(s)	23, 99, 306, 320
FatI	CATG	4 cut(s)	19, 95, 302, 316
FauI	CCCGC	1 cut(s)	239
FauNDI	CATATG	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	213
FriOI	GRGCYC	2 cut(s)	160, 315
Fsp4HI	GCNGC	1 cut(s)	213
FspAI	RTGCGCAY	1 cut(s)	132
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	101, 250
HapII	CCGG	2 cut(s)	14, 161
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	4 cut(s)	23, 99, 306, 320
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	4 cut(s)	10, 53, 202, 322
HpaII	CCGG	2 cut(s)	14, 161
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	207, 288
Hpy188III	TCNNGA	2 cut(s)	50, 329
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	138, 170, 212, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	23, 99, 306, 320
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	3 cut(s)	46, 283, 298
LmnI	GCTCC	2 cut(s)	163, 272
LpnPI	CCDG	6 cut(s)	27, 63, 129, 172, 174, 342
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	211
MalI	GATC	3 cut(s)	48, 285, 300
MboI	GATC	3 cut(s)	46, 283, 298
MboII	GAAGA	1 cut(s)	317
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	160, 315
MnlI	CCTC	3 cut(s)	16, 252, 337
Mph1103I	ATGCAT	1 cut(s)	340
MspI	CCGG	2 cut(s)	14, 161
Mva1269I	GAATGC	1 cut(s)	214
MvnI	CGCG	2 cut(s)	270, 384
MwoI	GCNNNNNNNGC	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	3 cut(s)	46, 283, 298
NlaIII	CATG	4 cut(s)	23, 99, 306, 320
NlaIV	GGNNCC	2 cut(s)	159, 191
NsbI	TGCGCA	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	340
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	4 cut(s)	10, 53, 202, 322
PkrI	GCNGC	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	159, 191
PspPI	GGNCC	2 cut(s)	99, 248
PsuI	RGATCY	1 cut(s)	298
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	3 cut(s)	46, 283, 298
Sau96I	GGNCC	2 cut(s)	99, 248
SduI	GDGCHC	2 cut(s)	160, 315
SetI	ASST	4 cut(s)	76, 244, 277, 281
SfaNI	GCATC	1 cut(s)	211
SsiI	CCGC	4 cut(s)	61, 246, 270, 382
StyI	CCWWGG	3 cut(s)	108, 193, 302
TaqI	TCGA	1 cut(s)	45
TfiI	GAWTC	4 cut(s)	10, 53, 202, 322
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	75, 215
TspRI	CASTG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.