Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0010212

Physical Location & Seq

Genomic Coordinates Reverse (-)

47410546 .. 47412516

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG339900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCCGGTGTTGGGAACAGTTGTTTTAGCTCAGTGTTCACAGCTCCTCTTGAAAAAGATGTGTTCTTGAAGAAGATGAAGAAATTTTCGTGCAGTTGTTTAATGGGTTCCAACAACTCCTTGAAATTGAACAAAGTCTATTGTGGATTGCCGGAGAGTGGAATTGAAAAGAAACCCACAAGCAGCACAGCCTCAAATTCAAAGAAAGTGGTTGAGGATTACAACACAGCTATGAAAAGGATGATGAGGAACCCATATGAATATCATCATGATCTGGGCATGAACTACACACTGATAACGGATAACTTGATCGTGGGCTCCCAGCCTCAGAAACCAGAAGATATAGATCACCTGAGAGAAGTAGAGAATGTGGCATACATTCTAAACTTGCAGCAGGACAATGATGTTGAATATTGGGGAATTGACTTGCAGTCGATAATAAAAAGATGTAAAGAAGTCGGAATCCGTCATATGAGGAGGCCTGCAAAAGATTTTGATCCAGATTCCTTGCGAAATGGTCTACCGAAAGCAGTTTCATCACTGGAATGGGCCATATATGAGGGAAAAGGTAAAGTGTACGTGCATTGCACTGCTGGATTGGGAAGGGCCCCTGCTGTGGCAATAGCTTACATGTACTGGTTCCTCGGAATGAATCTGAATGCAGCATATGATGCACTGACATCCAAGAGACCCTGTGGACCCAATAAGAGAGCAATACAAGGAGCCACTTATGATCTGGCCAAAAATGATCCATGGAAGGAGCCCTTTGAGAATCTTCCTGAATATGCATTTGAGGATATGGCAGATTGGGAAAGGAAGTTGATTCAAGACCGTGTCATTTCTCTCCGTGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046838 GO:0050308 GO:0071704 GO:1901575 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

285

Amino Acids

32.27

Weight (kDa)

8.34

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	102 - 219	5.7e-06	Swiss Army Knife protein, DSP-PTPase phosphatase domain
DSPc	PF00782	118 - 232	4.5e-15	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10940
fragaria_vesca	FvH4_7g25650 FvH4_7g25650 FvH4_7g25650 FvH4_7g25650
malus_domestica	MD01G1164000.v1.1 MD07G1231700.v1.1
prunus_persica	Prupe.2G261800_v2.0.a1 Prupe.2G261800_v2.0.a1
pyrus_communis	pycom07g20950
rosa_chinensis	RchiOBHm_Chr1g0371831
rosa_laevigata	RLG00000026940
rosa_multiflora	Rmu_co8313211.1_g000001 Rmu_sc0001755.1_g000049
rosa_roxburghii	Rroxscaffold_4G00285420
rosa_rugosa	Rorug01G0366600
rosa_samantha	Rh1AG376600 Rh1BG339900 Rh1CG352900 Rh1DG370900
rosa_wichuraiana	Rw1G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	520
AclWI	GGATC	2 cut(s)	491, 743
AcoI	YGGCCR	2 cut(s)	3, 738
AcsI	RAATTY	2 cut(s)	83, 196
AfaI	GTAC	2 cut(s)	578, 635
AfiI	CCNNNNNNNGG	3 cut(s)	12, 158, 616
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	8 cut(s)	53, 70, 124, 130, 167, 201, 410, 827
AhdI	GACNNNNNGTC	1 cut(s)	430
AluBI	AGCT	4 cut(s)	30, 44, 230, 626
AluI	AGCT	4 cut(s)	30, 44, 230, 626
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	491, 743
AoxI	GGCC	5 cut(s)	3, 479, 549, 606, 738
ApaI	GGGCCC	1 cut(s)	610
ApeKI	GCWGC	3 cut(s)	183, 391, 662
ApoI	RAATTY	2 cut(s)	83, 196
AspS9I	GGNCC	4 cut(s)	549, 606, 607, 698
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	698
BaeGI	GKGCMC	1 cut(s)	610
BalI	TGGCCA	1 cut(s)	740
BanII	GRGCYC	3 cut(s)	320, 610, 765
BbvI	GCAGC	3 cut(s)	195, 403, 674
BcoDI	GTCTC	1 cut(s)	682
BisI	GCNGC	3 cut(s)	184, 392, 663
BlsI	GCNGC	3 cut(s)	185, 393, 664
Bme18I	GGWCC	1 cut(s)	698
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmgT120I	GGNCC	4 cut(s)	549, 606, 607, 698
BmiI	GGNNCC	9 cut(s)	109, 251, 319, 608, 609, 641, 700, 724, 762
BmsI	GCATC	1 cut(s)	661
BsaAI	YACGTR	1 cut(s)	580
BsaBI	GATNNNNATC	2 cut(s)	345, 495
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	3 cut(s)	643, 752, 847
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 158, 616
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	546, 641
Bse3DI	GCAATG	1 cut(s)	583
Bse8I	GATNNNNATC	2 cut(s)	345, 495
BseDI	CCNNGG	3 cut(s)	643, 752, 847
BseGI	GGATG	2 cut(s)	246, 680
BseJI	GATNNNNATC	2 cut(s)	345, 495
BseLI	CCNNNNNNNGG	3 cut(s)	12, 158, 616
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	3 cut(s)	45, 341, 344
BseNI	ACTGG	2 cut(s)	546, 641
BseRI	GAGGAG	2 cut(s)	36, 490
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	3 cut(s)	195, 403, 674
BseYI	CCCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	112
BshFI	GGCC	5 cut(s)	5, 481, 551, 608, 740
BsiSI	CCGG	2 cut(s)	6, 152
BslI	CCNNNNNNNGG	3 cut(s)	12, 158, 616
BsmAI	GTCTC	1 cut(s)	682
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	5 cut(s)	5, 481, 551, 608, 740
Bso31I	GGTCTC	1 cut(s)	682
Bsp120I	GGGCCC	1 cut(s)	606
Bsp1286I	GDGCHC	3 cut(s)	320, 610, 765
Bsp143I	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
Bsp19I	CCATGG	1 cut(s)	752
BspANI	GGCC	5 cut(s)	5, 481, 551, 608, 740
BspCNI	CTCAG	3 cut(s)	44, 340, 345
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	9 cut(s)	109, 251, 319, 608, 609, 641, 700, 724, 762
BspPI	GGATC	2 cut(s)	491, 743
BspTNI	GGTCTC	1 cut(s)	682
BsrDI	GCAATG	1 cut(s)	583
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	546, 641
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	643, 752, 847
BssMI	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
BssT1I	CCWWGG	1 cut(s)	752
Bst4CI	ACNGT	2 cut(s)	20, 833
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	3 cut(s)	31, 327, 353
BstDSI	CCRYGG	2 cut(s)	752, 847
BstF5I	GGATG	2 cut(s)	246, 680
BstKTI	GATC	6 cut(s)	274, 312, 349, 499, 736, 751
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	671
BstNSI	RCATGY	1 cut(s)	634
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	3 cut(s)	195, 403, 674
BsuRI	GGCC	5 cut(s)	5, 481, 551, 608, 740
BtgI	CCRYGG	2 cut(s)	752, 847
BtsCI	GGATG	2 cut(s)	246, 680
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	5 cut(s)	39, 290, 539, 588, 674
Cac8I	GCNNGC	1 cut(s)	483
CciI	TCATGA	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	4 cut(s)	549, 606, 607, 698
Csp6I	GTAC	2 cut(s)	577, 634
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	5 cut(s)	269, 280, 631, 753, 855
CviQI	GTAC	2 cut(s)	577, 634
DdeI	CTNAG	3 cut(s)	31, 327, 353
DpnI	GATC	6 cut(s)	273, 311, 348, 498, 735, 750
DpnII	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
DriI	GACNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	2 cut(s)	3, 738
Eam1105I	GACNNNNNGTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	752
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	3 cut(s)	320, 610, 765
Eco31I	GGTCTC	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	698
EcoO109I	RGGNCCY	2 cut(s)	606, 607
EcoT14I	CCWWGG	1 cut(s)	752
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	3 cut(s)	320, 610, 765
ErhI	CCWWGG	1 cut(s)	752
FaeI	CATG	5 cut(s)	272, 283, 634, 756, 858
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FatI	CATG	5 cut(s)	268, 279, 630, 752, 854
FauNDI	CATATG	3 cut(s)	256, 471, 667
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	184, 392, 663
FokI	GGATG	2 cut(s)	253, 667
FriOI	GRGCYC	3 cut(s)	320, 610, 765
Fsp4HI	GCNGC	3 cut(s)	184, 392, 663
GluI	GCNGC	3 cut(s)	184, 392, 663
GsaI	CCCAGC	1 cut(s)	325
HaeIII	GGCC	5 cut(s)	5, 481, 551, 608, 740
HapII	CCGG	2 cut(s)	6, 152
Hin1II	CATG	5 cut(s)	272, 283, 634, 756, 858
HinfI	GANTC	5 cut(s)	462, 503, 652, 772, 823
HpaII	CCGG	2 cut(s)	6, 152
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	4 cut(s)	39, 521, 577, 698
Hpy188I	TCNGA	4 cut(s)	330, 461, 647, 657
Hpy188III	TCNNGA	6 cut(s)	50, 67, 269, 500, 779, 827
Hpy8I	GTNNAC	4 cut(s)	39, 521, 577, 698
HpyAV	CCTTC	2 cut(s)	597, 751
HpyCH4III	ACNGT	2 cut(s)	20, 833
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	9 cut(s)	93, 391, 430, 485, 583, 588, 662, 674, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	671
HpyF3I	CTNAG	3 cut(s)	31, 327, 353
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	5 cut(s)	272, 283, 634, 756, 858
Kzo9I	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
LmnI	GCTCC	4 cut(s)	49, 323, 722, 760
Lsp1109I	GCAGC	3 cut(s)	195, 403, 674
LweI	GCATC	1 cut(s)	661
MaeII	ACGT	1 cut(s)	579
MalI	GATC	6 cut(s)	273, 311, 348, 498, 735, 750
MboI	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
MboII	GAAGA	5 cut(s)	82, 85, 91, 350, 767
MhlI	GDGCHC	3 cut(s)	320, 610, 765
MlsI	TGGCCA	1 cut(s)	740
MluCI	AATT	5 cut(s)	83, 125, 162, 196, 420
MluNI	TGGCCA	1 cut(s)	740
MmeI	TCCRAC	2 cut(s)	135, 439
Mox20I	TGGCCA	1 cut(s)	740
Mph1103I	ATGCAT	1 cut(s)	790
MscI	TGGCCA	1 cut(s)	740
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	230, 544
Msp20I	TGGCCA	1 cut(s)	740
MspI	CCGG	2 cut(s)	6, 152
Mva1269I	GAATGC	1 cut(s)	664
MwoI	GCNNNNNNNGC	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	752
NdeI	CATATG	3 cut(s)	256, 471, 667
NdeII	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
NlaIII	CATG	5 cut(s)	272, 283, 634, 756, 858
NlaIV	GGNNCC	9 cut(s)	109, 251, 319, 608, 609, 641, 700, 724, 762
NsiI	ATGCAT	1 cut(s)	790
NspI	RCATGY	1 cut(s)	634
PagI	TCATGA	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	481
PciI	ACATGT	1 cut(s)	630
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	5 cut(s)	462, 503, 652, 772, 823
PflFI	GACNNNGTC	1 cut(s)	833
PkrI	GCNGC	3 cut(s)	185, 393, 664
Ppu21I	YACGTR	1 cut(s)	580
PscI	ACATGT	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	9 cut(s)	109, 251, 319, 608, 609, 641, 700, 724, 762
PspOMI	GGGCCC	1 cut(s)	606
PspPI	GGNCC	4 cut(s)	549, 606, 607, 698
PsyI	GACNNNGTC	1 cut(s)	833
RsaI	GTAC	2 cut(s)	578, 635
RsaNI	GTAC	2 cut(s)	577, 634
RseI	CAYNNNNRTG	2 cut(s)	230, 544
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	3 cut(s)	184, 392, 663
Sau3AI	GATC	6 cut(s)	271, 309, 346, 496, 733, 748
Sau96I	GGNCC	4 cut(s)	549, 606, 607, 698
SduI	GDGCHC	3 cut(s)	320, 610, 765
SetI	ASST	7 cut(s)	32, 46, 232, 354, 571, 582, 628
SfaNI	GCATC	1 cut(s)	661
SinI	GGWCC	1 cut(s)	698
SmiMI	CAYNNNNRTG	2 cut(s)	230, 544
Sse9I	AATT	5 cut(s)	83, 125, 162, 196, 420
SseBI	AGGCCT	1 cut(s)	481
SspI	AATATT	1 cut(s)	413
StuI	AGGCCT	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	752
TaaI	ACNGT	2 cut(s)	20, 833
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	1 cut(s)	434
TasI	AATT	5 cut(s)	83, 125, 162, 196, 420
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	5 cut(s)	462, 503, 652, 772, 823
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	5 cut(s)	39, 297, 546, 595, 681
TseI	GCWGC	3 cut(s)	183, 391, 662
TspDTI	ATGAA	6 cut(s)	92, 248, 273, 296, 525, 665
TspGWI	ACGGA	3 cut(s)	314, 455, 836
TspRI	CASTG	5 cut(s)	39, 297, 546, 595, 681
Tth111I	GACNNNGTC	1 cut(s)	833
VpaK11BI	GGWCC	1 cut(s)	698
XapI	RAATTY	2 cut(s)	83, 196
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	520
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.