Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010212

Physical Location & Seq

Genomic Coordinates Reverse (-)

19579605 .. 19583081

Gene Structure 3477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25650.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAGGACAAGGGCATTTTGGACAAACCAGTTGTGTGGTATAAAACTTCTGGTAGGCAAATCACAGCATCTGAGAGCAAAAGAGGAAAGGAAAGAATGGCAAGTGTTGGGAACAGTTGTTTGAGCTCAGTGTTCACAGCTCCTCTTGAAAAAGATGTGTTCTTGAAGAAGATGCAGAAATCTTCATGCAATTGTTTAATGGGTTCCAACAACTCCTTCAAATTGAGCAAAGTCTATTGTGGATTGCCAGAGAGTGGGATTGAAAAGAAACCCAAAAGCAGTACAGCCTCAAATTCAACCAAAGTGGTTGAGGATTACAATACAGCTATGAAGAGGATGATGAGGAACCCATATGAATATCATCATGATCTGGGCATGAACTACACACTGATAACTGATAACTTGATCGTGGGCTCCCAGCCTCAGAAACCAGAAGATATAGATCACCTGAGAGAAGTAGAGAATGTGGCATACATTCTAAACTTGCAGCAGGACAAGGATGTTGAATATTGGGGAATTGACTTGCAGTCAATCATAAATAGATGTAAAGAAGTCGGAATTCGTCACATGAGGAGACCTGATTTTGATCCAGATTCCTTGCGAAATGGTCTACCGAAAGCAGTTTCATCACTGGAATGGGCCATATCTGAAGGAAAAGGAAAAGTGTACGTTCATTGCACTGCCGGACTGGGAAGGGCCCCTGCTGTGGCAATAGCTTACATGTACTGGTTCCTTGGAATGAATCTCAATGCAGCATATGATGCATTGACTTCCAAGAGACCCTGTGGACCCAATAAGAGGGCAATACAAGGAGCTACTTATGATCTGGCCAAAAATGATCCATGGAAGGAGCCCTTTGAGAATCTTCCTGAATATGCATTTGAGGATATGGCAGATTGGGAAAGGAAGTTGATTCAAGACCGTGTCATTTCTCTCCGCGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046838 GO:0050308 GO:0071704 GO:1901575 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

316

Amino Acids

35.64

Weight (kDa)

8.78

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	13 - 131	7.7e-07	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P	PF22785	24 - 124	8.1e-07	Polymorphic toxin system, DSP-PTPase phosphatase
DSPc	PF00782	29 - 143	3.9e-16	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10940
fragaria_vesca	FvH4_7g25650 FvH4_7g25650 FvH4_7g25650 FvH4_7g25650
malus_domestica	MD01G1164000.v1.1 MD07G1231700.v1.1
prunus_persica	Prupe.2G261800_v2.0.a1 Prupe.2G261800_v2.0.a1
pyrus_communis	pycom07g20950
rosa_chinensis	RchiOBHm_Chr1g0371831
rosa_laevigata	RLG00000026940
rosa_multiflora	Rmu_co8313211.1_g000001 Rmu_sc0001755.1_g000049
rosa_roxburghii	Rroxscaffold_4G00285420
rosa_rugosa	Rorug01G0366600
rosa_samantha	Rh1AG376600 Rh1BG339900 Rh1CG352900 Rh1DG370900
rosa_wichuraiana	Rw1G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	610
AccII	CGCG	1 cut(s)	939
AciI	CCGC	2 cut(s)	937, 939
AclWI	GGATC	2 cut(s)	581, 833
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	2 cut(s)	292, 558
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	3 cut(s)	283, 668, 725
AfiI	CCNNNNNNNGG	3 cut(s)	254, 706, 798
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	7 cut(s)	149, 166, 220, 263, 297, 506, 917
AhdI	GACNNNNNGTC	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	5 cut(s)	126, 140, 326, 716, 815
AluI	AGCT	5 cut(s)	126, 140, 326, 716, 815
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	2 cut(s)	568, 772
AlwI	GGATC	2 cut(s)	581, 833
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	3 cut(s)	639, 696, 828
ApaI	GGGCCC	1 cut(s)	700
ApeKI	GCWGC	2 cut(s)	487, 752
ApoI	RAATTY	2 cut(s)	292, 558
AspS9I	GGNCC	4 cut(s)	639, 696, 697, 788
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	788
BaeGI	GKGCMC	1 cut(s)	700
BalI	TGGCCA	1 cut(s)	830
BanII	GRGCYC	4 cut(s)	128, 416, 700, 855
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	499, 764
BcoDI	GTCTC	2 cut(s)	568, 772
BisI	GCNGC	2 cut(s)	488, 753
BlsI	GCNGC	2 cut(s)	489, 754
Bme18I	GGWCC	1 cut(s)	788
BmeRI	GACNNNNNGTC	1 cut(s)	526
BmgT120I	GGNCC	4 cut(s)	639, 696, 697, 788
BmiI	GGNNCC	8 cut(s)	205, 347, 415, 698, 699, 731, 790, 852
BmrI	ACTGGG	1 cut(s)	698
BmsI	GCATC	3 cut(s)	77, 162, 751
BmuI	ACTGGG	1 cut(s)	698
BsaBI	GATNNNNATC	2 cut(s)	441, 585
BsaI	GGTCTC	2 cut(s)	568, 772
BsaJI	CCNNGG	3 cut(s)	733, 842, 937
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 706, 798
Bse1I	ACTGG	4 cut(s)	29, 636, 693, 731
Bse3DI	GCAATG	1 cut(s)	673
Bse8I	GATNNNNATC	2 cut(s)	441, 585
BseDI	CCNNGG	3 cut(s)	733, 842, 937
BseGI	GGATG	2 cut(s)	342, 505
BseJI	GATNNNNATC	2 cut(s)	441, 585
BseLI	CCNNNNNNNGG	3 cut(s)	254, 706, 798
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	4 cut(s)	63, 141, 437, 440
BseNI	ACTGG	4 cut(s)	29, 636, 693, 731
BseRI	GAGGAG	2 cut(s)	132, 586
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	2 cut(s)	499, 764
BseYI	CCCAGC	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	939
BshFI	GGCC	3 cut(s)	641, 698, 830
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	684
BslI	CCNNNNNNNGG	3 cut(s)	254, 706, 798
BsmAI	GTCTC	2 cut(s)	568, 772
BsnI	GGCC	3 cut(s)	641, 698, 830
Bso31I	GGTCTC	2 cut(s)	568, 772
Bsp120I	GGGCCC	1 cut(s)	696
Bsp1286I	GDGCHC	4 cut(s)	128, 416, 700, 855
Bsp143I	GATC	6 cut(s)	367, 405, 442, 586, 823, 838
Bsp19I	CCATGG	1 cut(s)	842
BspACI	CCGC	2 cut(s)	937, 939
BspANI	GGCC	3 cut(s)	641, 698, 830
BspCNI	CTCAG	4 cut(s)	64, 140, 436, 441
BspFNI	CGCG	1 cut(s)	939
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	8 cut(s)	205, 347, 415, 698, 699, 731, 790, 852
BspPI	GGATC	2 cut(s)	581, 833
BspTNI	GGTCTC	2 cut(s)	568, 772
BsrDI	GCAATG	1 cut(s)	673
BsrI	ACTGG	4 cut(s)	29, 636, 693, 731
BssECI	CCNNGG	3 cut(s)	733, 842, 937
BssMI	GATC	6 cut(s)	367, 405, 442, 586, 823, 838
BssT1I	CCWWGG	2 cut(s)	733, 842
Bst4CI	ACNGT	2 cut(s)	116, 923
Bst6I	CTCTTC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstDEI	CTNAG	4 cut(s)	72, 127, 423, 449
BstDSI	CCRYGG	2 cut(s)	842, 937
BstF5I	GGATG	2 cut(s)	342, 505
BstFNI	CGCG	1 cut(s)	939
BstKTI	GATC	6 cut(s)	370, 408, 445, 589, 826, 841
BstMAI	GTCTC	2 cut(s)	568, 772
BstMBI	GATC	6 cut(s)	367, 405, 442, 586, 823, 838
BstMWI	GCNNNNNNNGC	1 cut(s)	761
BstNSI	RCATGY	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	1 cut(s)	939
BstV1I	GCAGC	2 cut(s)	499, 764
BstXI	CCANNNNNNTGG	1 cut(s)	36
BsuRI	GGCC	3 cut(s)	641, 698, 830
BtgI	CCRYGG	2 cut(s)	842, 937
BtsCI	GGATG	2 cut(s)	342, 505
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	4 cut(s)	135, 386, 629, 678
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	364
Cfr13I	GGNCC	4 cut(s)	639, 696, 697, 788
Cfr42I	CCGCGG	1 cut(s)	940
Csp6I	GTAC	3 cut(s)	282, 667, 724
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	7 cut(s)	186, 365, 376, 568, 721, 843, 945
CviQI	GTAC	3 cut(s)	282, 667, 724
DdeI	CTNAG	4 cut(s)	72, 127, 423, 449
DpnI	GATC	6 cut(s)	369, 407, 444, 588, 825, 840
DpnII	GATC	6 cut(s)	367, 405, 442, 586, 823, 838
DriI	GACNNNNNGTC	1 cut(s)	526
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	326
Eam1105I	GACNNNNNGTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	733, 842
Eco24I	GRGCYC	4 cut(s)	128, 416, 700, 855
Eco31I	GGTCTC	2 cut(s)	568, 772
Eco47I	GGWCC	1 cut(s)	788
Eco53kI	GAGCTC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	126
EcoO109I	RGGNCCY	2 cut(s)	696, 697
EcoRI	GAATTC	1 cut(s)	558
EcoT14I	CCWWGG	2 cut(s)	733, 842
EcoT22I	ATGCAT	2 cut(s)	766, 880
EcoT38I	GRGCYC	4 cut(s)	128, 416, 700, 855
ErhI	CCWWGG	2 cut(s)	733, 842
FaeI	CATG	7 cut(s)	189, 368, 379, 571, 724, 846, 948
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FatI	CATG	7 cut(s)	185, 364, 375, 567, 720, 842, 944
FauNDI	CATATG	2 cut(s)	352, 757
FblI	GTMKAC	1 cut(s)	610
Fnu4HI	GCNGC	2 cut(s)	488, 753
FokI	GGATG	2 cut(s)	349, 512
FriOI	GRGCYC	4 cut(s)	128, 416, 700, 855
Fsp4HI	GCNGC	2 cut(s)	488, 753
GluI	GCNGC	2 cut(s)	488, 753
GsaI	CCCAGC	1 cut(s)	421
HaeIII	GGCC	3 cut(s)	641, 698, 830
HapII	CCGG	1 cut(s)	684
Hin1II	CATG	7 cut(s)	189, 368, 379, 571, 724, 846, 948
HinfI	GANTC	4 cut(s)	593, 742, 862, 913
HpaII	CCGG	1 cut(s)	684
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	4 cut(s)	135, 611, 667, 788
Hpy188I	TCNGA	4 cut(s)	73, 426, 557, 649
Hpy188III	TCNNGA	6 cut(s)	146, 163, 365, 590, 869, 917
Hpy8I	GTNNAC	4 cut(s)	135, 611, 667, 788
HpyAV	CCTTC	4 cut(s)	226, 644, 687, 841
HpyCH4III	ACNGT	2 cut(s)	116, 923
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	8 cut(s)	175, 189, 487, 526, 678, 752, 764, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	761
HpyF3I	CTNAG	4 cut(s)	72, 127, 423, 449
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	7 cut(s)	189, 368, 379, 571, 724, 846, 948
KspI	CCGCGG	1 cut(s)	940
Kzo9I	GATC	6 cut(s)	367, 405, 442, 586, 823, 838
LmnI	GCTCC	4 cut(s)	145, 419, 812, 850
Lsp1109I	GCAGC	2 cut(s)	499, 764
LweI	GCATC	3 cut(s)	77, 162, 751
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	6 cut(s)	369, 407, 444, 588, 825, 840
MboI	GATC	6 cut(s)	367, 405, 442, 586, 823, 838
MboII	GAAGA	6 cut(s)	174, 178, 181, 343, 446, 857
MfeI	CAATTG	1 cut(s)	190
MhlI	GDGCHC	4 cut(s)	128, 416, 700, 855
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	5 cut(s)	190, 221, 292, 516, 558
MluNI	TGGCCA	1 cut(s)	830
MmeI	TCCRAC	2 cut(s)	231, 535
Mox20I	TGGCCA	1 cut(s)	830
Mph1103I	ATGCAT	2 cut(s)	766, 880
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	634
Msp20I	TGGCCA	1 cut(s)	830
MspA1I	CMGCKG	1 cut(s)	939
MspI	CCGG	1 cut(s)	684
MunI	CAATTG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	939
MwoI	GCNNNNNNNGC	1 cut(s)	761
NcoI	CCATGG	1 cut(s)	842
NdeI	CATATG	2 cut(s)	352, 757
NdeII	GATC	6 cut(s)	367, 405, 442, 586, 823, 838
NlaIII	CATG	7 cut(s)	189, 368, 379, 571, 724, 846, 948
NlaIV	GGNNCC	8 cut(s)	205, 347, 415, 698, 699, 731, 790, 852
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	2 cut(s)	766, 880
NspI	RCATGY	1 cut(s)	724
PagI	TCATGA	1 cut(s)	364
PciI	ACATGT	1 cut(s)	720
PfeI	GAWTC	4 cut(s)	593, 742, 862, 913
PflFI	GACNNNGTC	1 cut(s)	923
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	489, 754
PscI	ACATGT	1 cut(s)	720
Psp124BI	GAGCTC	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	417
PspN4I	GGNNCC	8 cut(s)	205, 347, 415, 698, 699, 731, 790, 852
PspOMI	GGGCCC	1 cut(s)	696
PspPI	GGNCC	4 cut(s)	639, 696, 697, 788
PstNI	CAGNNNCTG	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	923
RsaI	GTAC	3 cut(s)	283, 668, 725
RsaNI	GTAC	3 cut(s)	282, 667, 724
RseI	CAYNNNNRTG	1 cut(s)	634
SacI	GAGCTC	1 cut(s)	128
SacII	CCGCGG	1 cut(s)	940
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	2 cut(s)	488, 753
Sau3AI	GATC	6 cut(s)	367, 405, 442, 586, 823, 838
Sau96I	GGNCC	4 cut(s)	639, 696, 697, 788
SduI	GDGCHC	4 cut(s)	128, 416, 700, 855
SetI	ASST	8 cut(s)	128, 142, 328, 450, 580, 672, 718, 817
SfaNI	GCATC	3 cut(s)	77, 162, 751
Sfr303I	CCGCGG	1 cut(s)	940
SgrBI	CCGCGG	1 cut(s)	940
SinI	GGWCC	1 cut(s)	788
SmiMI	CAYNNNNRTG	1 cut(s)	634
Sse9I	AATT	5 cut(s)	190, 221, 292, 516, 558
SsiI	CCGC	2 cut(s)	937, 939
SspI	AATATT	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	128
StyI	CCWWGG	2 cut(s)	733, 842
TaaI	ACNGT	2 cut(s)	116, 923
TaiI	ACGT	1 cut(s)	672
TasI	AATT	5 cut(s)	190, 221, 292, 516, 558
TatI	WGTACW	2 cut(s)	281, 723
TfiI	GAWTC	4 cut(s)	593, 742, 862, 913
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	4 cut(s)	135, 393, 636, 685
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	2 cut(s)	487, 752
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	8 cut(s)	17, 174, 344, 369, 392, 615, 662, 755
TspRI	CASTG	4 cut(s)	135, 393, 636, 685
Tth111I	GACNNNGTC	1 cut(s)	923
Van91I	CCANNNNNTGG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	788
XapI	RAATTY	2 cut(s)	292, 558
XceI	RCATGY	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	610
Zsp2I	ATGCAT	2 cut(s)	766, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.