Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009400

Physical Location & Seq

Genomic Coordinates Reverse (-)

3432811 .. 3436403

Gene Structure 3593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGACTGCTCATGCAGTACTCGTCCTTCGTCTCTGCTTATCTCTTCCGAACCATCTTTTCGCTTTCCTCACTCTAATTTCTCCTCGAATCTCAGCTTTCAGATACCGAAAGATACGAAGTTGGTGAAGCAGCGTTTGGTAGTGAGAAGTTCCTCTGGTTCTGATTATCAAAACGGCGACGTTAATGGGTTTCCTCTCAAACCAAACAAACTCTTTATGCAAGAGGCGATTGGAGCTGAGTATGGAGAAGGGTTTGAGACTTTTAGACAGGATGGTCCTCTTAAAGTGGATGTGGATTTCTGGAATGAGAAACTACAAGATGGTTTTCTTCAAAGAATACGTTACGCAATGAAACCAGATGAAGCCTATGGACTTATTTTCTCTTGGGACAATGTCGTGGCTGATACTCGAAGTCTTAAGTTGGAAGCTTGGAAGCAGCTCGCTGCAGAAGAAGGAAAAGAAATTACGGAGGAGGTTGACATCCAAAGACTGATGCTTTATGCCGGCGCTGACCATGTGCTTCGTAAGGTGTTGTTTTGGGAGAAAACGCAAAGCAAAATTGATAGATTGAAACTCAGGCTATCGGAAATATATTATGATAGTCTTCTCAAACTCACAGAACCAAAAGAAGGACTTAGAGATTGGCTTGACGCTGTTACAACTGCTCGCATTCCCTGTGCTGTTGTCTCAAATCTTGATCGGAAAAACATGATCAATGCTCTTGAACGGATGGGACTTCAAAAGTATTTCCAGGCAGTGGTTTCCGAGGAAGATGGTATGGAATCGATAGCTCACAGATTTCTTTCTGCGGCTGTGAAGTTGGATAGAAAACCGTCGAAATGTGTTGTGTTTGAGGATGATCCTAGGGGTATAACCGCGGCTCACAACTGTACAATGATGGCAGTTGGATTAATCGGTGCTCATCGGGCGTATGATCTGGTTCAGGCTGATCTTGCAGTTGGAAACTTTTACGAGCTATCTGTGATAAACCTCAGGAGATTATTTGCCAACAAAGGCTCTACATTTATGGATCACGAGAAACAGATCATAGAAAAATCGCCGCCCAAAAGAAAGCTTACCATTGATACCATATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

365

Amino Acids

41.57

Weight (kDa)

6.63

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	132 - 300	9.9e-16	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	134 - 295	2.9e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10970 AT3G10970 AT3G10970
fragaria_vesca	FvH4_7g25610
malus_domestica	MD01G1163400.v1.1 MD07G1231400.v1.1
prunus_persica	Prupe.2G261400_v2.0.a1 Prupe.2G261400_v2.0.a1
pyrus_communis	pycom01g17800 pycom07g20920
rosa_chinensis	RchiOBHm_Chr1g0371751
rosa_laevigata	RLG00000026944
rosa_multiflora	Rmu_sc0001755.1_g000053
rosa_roxburghii	Rroxscaffold_4G00285450
rosa_rugosa	Rorug01G0366000 Rorug01G0366100 Rorug01G0366200
rosa_samantha	Rh1AG376100 Rh1BG339500 Rh1CG352600 Rh1DG370700
rosa_wichuraiana	Rw1G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	273
AccB7I	CCANNNNNTGG	1 cut(s)	757
AccII	CGCG	1 cut(s)	878
AciI	CCGC	4 cut(s)	809, 876, 878, 1061
AclWI	GGATC	2 cut(s)	854, 1038
AfaI	GTAC	2 cut(s)	19, 892
AfiI	CCNNNNNNNGG	2 cut(s)	629, 757
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	4 cut(s)	332, 571, 725, 740
AjnI	CCWGG	1 cut(s)	750
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	7 cut(s)	96, 236, 428, 439, 791, 976, 1075
AluI	AGCT	7 cut(s)	96, 236, 428, 439, 791, 976, 1075
Alw21I	GWGCWC	1 cut(s)	922
Alw26I	GTCTC	3 cut(s)	36, 251, 691
AlwI	GGATC	2 cut(s)	854, 1038
ApeKI	GCWGC	3 cut(s)	130, 436, 443
AseI	ATTAAT	1 cut(s)	911
AspA2I	CCTAGG	1 cut(s)	863
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	275
AvrII	CCTAGG	1 cut(s)	863
AxyI	CCTNAGG	1 cut(s)	992
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BauI	CACGAG	1 cut(s)	1034
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	922
BbvI	GCAGC	3 cut(s)	142, 430, 448
BccI	CCATC	6 cut(s)	61, 266, 314, 724, 767, 892
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	752
BclI	TGATCA	1 cut(s)	711
BcoDI	GTCTC	3 cut(s)	36, 251, 691
BfaI	CTAG	1 cut(s)	864
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	510
BfrI	CTTAAG	1 cut(s)	416
BisI	GCNGC	6 cut(s)	131, 437, 444, 810, 879, 1061
BlnI	CCTAGG	1 cut(s)	863
BlsI	GCNGC	6 cut(s)	132, 438, 445, 811, 880, 1062
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	752
BmsI	GCATC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	596
Bsa29I	ATCGAT	1 cut(s)	785
BsaJI	CCNNGG	3 cut(s)	765, 863, 876
Bsc4I	CCNNNNNNNGG	2 cut(s)	629, 757
Bse118I	RCCGGY	1 cut(s)	503
Bse21I	CCTNAGG	1 cut(s)	992
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	752
BseCI	ATCGAT	1 cut(s)	785
BseDI	CCNNGG	3 cut(s)	765, 863, 876
BseGI	GGATG	5 cut(s)	277, 295, 480, 735, 862
BseLI	CCNNNNNNNGG	2 cut(s)	629, 757
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	4 cut(s)	106, 228, 589, 1006
BseRI	GAGGAG	2 cut(s)	73, 485
BseXI	GCAGC	3 cut(s)	142, 430, 448
Bsh1236I	CGCG	1 cut(s)	878
BshVI	ATCGAT	1 cut(s)	785
BsiHKAI	GWGCWC	1 cut(s)	922
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	401, 747
BslI	CCNNNNNNNGG	2 cut(s)	629, 757
BsmAI	GTCTC	3 cut(s)	36, 251, 691
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	401, 747
BsmI	GAATGC	1 cut(s)	669
Bsp1286I	GDGCHC	1 cut(s)	922
Bsp1407I	TGTACA	1 cut(s)	890
Bsp143I	GATC	7 cut(s)	697, 711, 859, 934, 949, 1030, 1044
BspACI	CCGC	4 cut(s)	809, 876, 878, 1061
BspCNI	CTCAG	4 cut(s)	105, 229, 588, 1005
BspDI	ATCGAT	1 cut(s)	785
BspFNI	CGCG	1 cut(s)	878
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	2 cut(s)	854, 1038
BspTI	CTTAAG	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	503
BsrGI	TGTACA	1 cut(s)	890
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	3 cut(s)	765, 863, 876
BssMI	GATC	7 cut(s)	697, 711, 859, 934, 949, 1030, 1044
BssSI	CACGAG	1 cut(s)	1034
BssT1I	CCWWGG	1 cut(s)	863
Bst2BI	CACGAG	1 cut(s)	1034
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	2 cut(s)	834, 890
Bst6I	CTCTTC	1 cut(s)	49
BstAFI	CTTAAG	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	890
BstC8I	GCNNGC	3 cut(s)	441, 505, 667
BstDEI	CTNAG	5 cut(s)	92, 237, 575, 635, 992
BstDSI	CCRYGG	1 cut(s)	876
BstF5I	GGATG	5 cut(s)	277, 295, 480, 735, 862
BstFNI	CGCG	1 cut(s)	878
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	7 cut(s)	700, 714, 862, 937, 952, 1033, 1047
BstMAI	GTCTC	3 cut(s)	36, 251, 691
BstMBI	GATC	7 cut(s)	697, 711, 859, 934, 949, 1030, 1044
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 926, 953
BstNI	CCWGG	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	750
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	878
BstV1I	GCAGC	3 cut(s)	142, 430, 448
BstV2I	GAAGAC	1 cut(s)	596
Bsu15I	ATCGAT	1 cut(s)	785
Bsu36I	CCTNAGG	1 cut(s)	992
BsuTUI	ATCGAT	1 cut(s)	785
BtgI	CCRYGG	1 cut(s)	876
BtsCI	GGATG	5 cut(s)	277, 295, 480, 735, 862
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	3 cut(s)	441, 505, 667
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	275
Cfr42I	CCGCGG	1 cut(s)	879
ClaI	ATCGAT	1 cut(s)	785
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	2 cut(s)	18, 891
CviAII	CATG	3 cut(s)	12, 515, 709
CviQI	GTAC	2 cut(s)	18, 891
DdeI	CTNAG	5 cut(s)	92, 237, 575, 635, 992
DpnI	GATC	7 cut(s)	699, 713, 861, 936, 951, 1032, 1046
DpnII	GATC	7 cut(s)	697, 711, 859, 934, 949, 1030, 1044
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	863
Eco47I	GGWCC	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	992
EcoRII	CCWGG	1 cut(s)	750
EcoT14I	CCWWGG	1 cut(s)	863
ErhI	CCWWGG	1 cut(s)	863
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	3 cut(s)	15, 518, 712
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	2 cut(s)	401, 747
FatI	CATG	3 cut(s)	11, 514, 708
FbaI	TGATCA	1 cut(s)	711
Fnu4HI	GCNGC	6 cut(s)	131, 437, 444, 810, 879, 1061
FokI	GGATG	5 cut(s)	284, 302, 467, 742, 869
Fsp4HI	GCNGC	6 cut(s)	131, 437, 444, 810, 879, 1061
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	6 cut(s)	131, 437, 444, 810, 879, 1061
HaeII	RGCGCY	1 cut(s)	510
HapII	CCGG	1 cut(s)	504
HgaI	GACGC	1 cut(s)	659
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	3 cut(s)	15, 518, 712
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	2 cut(s)	426, 1073
HinfI	GANTC	2 cut(s)	88, 782
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	6 cut(s)	49, 102, 163, 586, 702, 766
Hpy188III	TCNNGA	5 cut(s)	301, 695, 722, 994, 1034
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	2 cut(s)	182, 838
HpyAV	CCTTC	4 cut(s)	36, 242, 446, 623
HpyCH4III	ACNGT	2 cut(s)	834, 890
HpyCH4IV	ACGT	2 cut(s)	180, 340
HpyCH4V	TGCA	4 cut(s)	15, 220, 446, 956
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 926, 953
HpyF3I	CTNAG	5 cut(s)	92, 237, 575, 635, 992
HpySE526I	ACGT	2 cut(s)	180, 340
Hsp92II	CATG	3 cut(s)	15, 518, 712
HspAI	GCGC	1 cut(s)	507
KroI	GCCGGC	1 cut(s)	503
KroNI	GCCGGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	711
KspI	CCGCGG	1 cut(s)	879
Kzo9I	GATC	7 cut(s)	697, 711, 859, 934, 949, 1030, 1044
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	3 cut(s)	142, 430, 448
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	2 cut(s)	180, 340
MaeIII	GTNAC	2 cut(s)	341, 655
MalI	GATC	7 cut(s)	699, 713, 861, 936, 951, 1032, 1046
MboI	GATC	7 cut(s)	697, 711, 859, 934, 949, 1030, 1044
MboII	GAAGA	5 cut(s)	36, 320, 461, 596, 782
MhlI	GDGCHC	1 cut(s)	922
MluCI	AATT	3 cut(s)	76, 462, 558
MmeI	TCCRAC	4 cut(s)	402, 801, 886, 940
MroNI	GCCGGC	1 cut(s)	503
MseI	TTAA	4 cut(s)	183, 282, 417, 911
MspA1I	CMGCKG	1 cut(s)	878
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	752
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	752
MvnI	CGCG	1 cut(s)	878
MwoI	GCNNNNNNNGC	3 cut(s)	233, 926, 953
NaeI	GCCGGC	1 cut(s)	505
NdeII	GATC	7 cut(s)	697, 711, 859, 934, 949, 1030, 1044
NgoMIV	GCCGGC	1 cut(s)	503
NlaIII	CATG	3 cut(s)	15, 518, 712
PctI	GAATGC	1 cut(s)	669
PdiI	GCCGGC	1 cut(s)	505
PfeI	GAWTC	2 cut(s)	88, 782
PflFI	GACNNNGTC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	757
PkrI	GCNGC	6 cut(s)	132, 438, 445, 811, 880, 1062
PshBI	ATTAAT	1 cut(s)	911
Psp6I	CCWGG	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	750
PspPI	GGNCC	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	448
PsyI	GACNNNGTC	1 cut(s)	392
RsaI	GTAC	2 cut(s)	19, 892
RsaNI	GTAC	2 cut(s)	18, 891
SacII	CCGCGG	1 cut(s)	879
SaqAI	TTAA	4 cut(s)	183, 282, 417, 911
SatI	GCNGC	6 cut(s)	131, 437, 444, 810, 879, 1061
Sau3AI	GATC	7 cut(s)	697, 711, 859, 934, 949, 1030, 1044
Sau96I	GGNCC	1 cut(s)	275
ScaI	AGTACT	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	1 cut(s)	922
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	1 cut(s)	444
Sfr303I	CCGCGG	1 cut(s)	879
SgrBI	CCGCGG	1 cut(s)	879
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	76, 462, 558
SsiI	CCGC	4 cut(s)	809, 876, 878, 1061
SspMI	CTAG	1 cut(s)	864
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	1 cut(s)	863
TaaI	ACNGT	2 cut(s)	834, 890
TaiI	ACGT	2 cut(s)	183, 343
TaqI	TCGA	4 cut(s)	86, 409, 785, 836
TasI	AATT	3 cut(s)	76, 462, 558
TatI	WGTACW	2 cut(s)	17, 890
TauI	GCSGC	3 cut(s)	812, 881, 1063
TfiI	GAWTC	2 cut(s)	88, 782
Tru1I	TTAA	4 cut(s)	183, 282, 417, 911
Tru9I	TTAA	4 cut(s)	183, 282, 417, 911
TscAI	CASTG	1 cut(s)	762
TseI	GCWGC	3 cut(s)	130, 436, 443
TspDTI	ATGAA	2 cut(s)	365, 375
TspGWI	ACGGA	2 cut(s)	482, 742
TspRI	CASTG	1 cut(s)	762
Tth111I	GACNNNGTC	1 cut(s)	392
Van91I	CCANNNNNTGG	1 cut(s)	757
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	275
VspI	ATTAAT	1 cut(s)	911
XmaJI	CCTAGG	1 cut(s)	863
XspI	CTAG	1 cut(s)	864
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.