Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009400

Physical Location & Seq

Genomic Coordinates Forward (+)

48177019 .. 48177406

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTCAAGAGCAACAGTTTGCTGCAGATGAAATCTCAGCCATGGTTCTTGCAAGGATGCAAGAGACTGCTGAGGCCTATTTCAGCTCAGCTGTTAAAAATGCAGTTGTTACTGTGCCAGTTTACTTCAATACCAAAGACACTGGCATGCTGCTGTTCTGCTGGCCTAAATATGTTCCTCTACTTGCCACAGGGGGATGGTAATTTTGAAGTGAAGGCTACTGCTGGAGACAATGACCTTGGTGTGAAGACTCCGATAGCAGAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

89

Amino Acids

9.86

Weight (kDa)

8.95

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10970 AT3G10970 AT3G10970
fragaria_vesca	FvH4_7g25610
malus_domestica	MD01G1163400.v1.1 MD07G1231400.v1.1
prunus_persica	Prupe.2G261400_v2.0.a1 Prupe.2G261400_v2.0.a1
pyrus_communis	pycom01g17800 pycom07g20920
rosa_chinensis	RchiOBHm_Chr1g0371751
rosa_laevigata	RLG00000026944
rosa_multiflora	Rmu_sc0001755.1_g000053
rosa_roxburghii	Rroxscaffold_4G00285450
rosa_rugosa	Rorug01G0366000 Rorug01G0366100 Rorug01G0366200
rosa_samantha	Rh1AG376100 Rh1BG339500 Rh1CG352600 Rh1DG370700
rosa_wichuraiana	Rw1G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	129, 209
AluBI	AGCT	2 cut(s)	86, 91
AluI	AGCT	2 cut(s)	86, 91
Alw26I	GTCTC	2 cut(s)	58, 222
AoxI	GGCC	2 cut(s)	74, 163
ApeKI	GCWGC	2 cut(s)	22, 150
BbsI	GAAGAC	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	9, 137
BccI	CCATC	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	58, 222
BfmI	CTRYAG	1 cut(s)	23
BisI	GCNGC	2 cut(s)	23, 151
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	2 cut(s)	24, 152
BmsI	GCATC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	71
Bpu1102I	GCTNAGC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	41, 238
Bse1I	ACTGG	2 cut(s)	118, 147
BseDI	CCNNGG	2 cut(s)	41, 238
BseGI	GGATG	2 cut(s)	62, 202
BseMII	CTCAG	3 cut(s)	50, 62, 101
BseNI	ACTGG	2 cut(s)	118, 147
BseXI	GCAGC	2 cut(s)	9, 137
BshFI	GGCC	2 cut(s)	76, 165
BsmAI	GTCTC	2 cut(s)	58, 222
BsnI	GGCC	2 cut(s)	76, 165
Bsp1720I	GCTNAGC	1 cut(s)	87
Bsp19I	CCATGG	1 cut(s)	41
BspANI	GGCC	2 cut(s)	76, 165
BspCNI	CTCAG	3 cut(s)	49, 63, 100
BspMAI	CTGCAG	1 cut(s)	27
BsrI	ACTGG	2 cut(s)	118, 147
BssECI	CCNNGG	2 cut(s)	41, 238
BssT1I	CCWWGG	2 cut(s)	41, 238
Bst4CI	ACNGT	2 cut(s)	17, 114
BstC8I	GCNNGC	2 cut(s)	148, 163
BstDEI	CTNAG	3 cut(s)	36, 71, 87
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	62, 202
BstMAI	GTCTC	2 cut(s)	58, 222
BstNSI	RCATGY	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	9, 137
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	76, 165
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	62, 202
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	148, 163
CviAII	CATG	2 cut(s)	42, 147
CviJI	RGCY	6 cut(s)	40, 76, 86, 91, 165, 218
CviKI_1	RGCY	6 cut(s)	40, 76, 86, 91, 165, 218
DdeI	CTNAG	3 cut(s)	36, 71, 87
Eco130I	CCWWGG	2 cut(s)	41, 238
Eco147I	AGGCCT	1 cut(s)	76
EcoT14I	CCWWGG	2 cut(s)	41, 238
ErhI	CCWWGG	2 cut(s)	41, 238
FaeI	CATG	2 cut(s)	45, 150
FaiI	YATR	3 cut(s)	43, 148, 173
FatI	CATG	2 cut(s)	41, 146
Fnu4HI	GCNGC	2 cut(s)	23, 151
FokI	GGATG	2 cut(s)	69, 209
Fsp4HI	GCNGC	2 cut(s)	23, 151
GluI	GCNGC	2 cut(s)	23, 151
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	76, 165
Hin1II	CATG	2 cut(s)	45, 150
HinfI	GANTC	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	17, 114
HpyCH4V	TGCA	4 cut(s)	25, 52, 60, 103
HpyF3I	CTNAG	3 cut(s)	36, 71, 87
Hsp92II	CATG	2 cut(s)	45, 150
LpnPI	CCDG	5 cut(s)	128, 131, 147, 176, 210
Lsp1109I	GCAGC	2 cut(s)	9, 137
LweI	GCATC	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	108
MboII	GAAGA	1 cut(s)	259
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	2 cut(s)	66, 188
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	145
MspA1I	CMGCKG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	41
NlaIII	CATG	2 cut(s)	45, 150
NspI	RCATGY	1 cut(s)	150
PaeI	GCATGC	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	24, 152
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	2 cut(s)	23, 151
SchI	GAGTC	1 cut(s)	244
SetI	ASST	3 cut(s)	88, 93, 240
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	145
SphI	GCATGC	1 cut(s)	150
Sse9I	AATT	1 cut(s)	202
SseBI	AGGCCT	1 cut(s)	76
StuI	AGGCCT	1 cut(s)	76
StyI	CCWWGG	2 cut(s)	41, 238
TaaI	ACNGT	2 cut(s)	17, 114
TasI	AATT	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	2 cut(s)	22, 150
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	147
XceI	RCATGY	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.