Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009400

Physical Location & Seq

Genomic Coordinates Forward (+)

17010903 .. 17013817

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17800.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAAAAACCACAAATTAAATATTGGTTTTTTCTGAAATCACGTGATTCCCACGGAAAGAATGTAAGTACAGAAAAGGCTTGTACAAACGGCTCTGTATTCGTCTCTGATGGACTATGCCTGCAGCAGTTTCAGAAGCTCGTCTATGCTCCTTCCATGGCGATCCCCGTCTCCTCACCCGCACACTTCCTTCGCTTCCAAGCTCAAATTTATGAGAGTGAAGCGTTTGGACATGGCGAAGCATCAAACTGTGGTCAGGAGTTCTTGTGGGTTCAACGAAAATGGCTCCGTCAACGGGTTTCCGGTCATACCCAGCAAGCTTTTCATGCAGGAGTTTCGGCGATTGGAGCTGAATATGGAGAAGGTTTTGAAACTTTTAGACCAGATGGACCTCTTAAGGTTGATGTGGATTTTTTGAACGACAGACTGCAAGAAGGTTTTCTTAAACGAATACGATATGCCATGAAACCAGATGAAGCTTATGGTCTAATATTCTCTTTTGACAATGTCGTGGCTGATACTCGAACTTTGAAATTAAATGCTTGGAAGCAGCTTGCCACGGAAGAGGGAAAGGAAATTCCCGAAGATGCAGCTTTGCAAAGACAGATGCTTTATGCAGGTGCTGATCATGTGTTGCATAAGCTTTTACTCTGGGATAAAGCAGATGGAGAACTGGATAGGTTGGCTTTAAAGTTTTCACAATTATACTGTGATAATCTTCTCAGGCTTAGTCAACCCGTGGAGGGGCTCAAAGAGTGGTTAGATGCTGTATCCACGGCTCGTATCCCTTGTGCTGTAGTTTCAAGTCTTGATAGGAGAAACATGACAGAAGCCCTAGAACGAATGGGTCTCAAGAAGTATTTTCAGGCAATTGTGACAGAGGAAGATGGAATGGATTCGATAGCTCATAGGTTTCTTTCAGCAGCCGTGAAGCTGGATCGGAAGCCATCCAAGTGCGTTGTGTTTGAGGATGAGCCTAGGGGTATAACCGCTGCTCACAACTGTACAATGATGGCTGTGGCACTGATTGGCGCCCACCCTGCGTATGACCTGGTGCAGGCTGATCTTGCAGTTGCTAGCTTTAACGAACTTTCCGTGAAAGATCAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

371

Amino Acids

41.59

Weight (kDa)

5.97

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10970 AT3G10970 AT3G10970
fragaria_vesca	FvH4_7g25610
malus_domestica	MD01G1163400.v1.1 MD07G1231400.v1.1
prunus_persica	Prupe.2G261400_v2.0.a1 Prupe.2G261400_v2.0.a1
pyrus_communis	pycom01g17800 pycom07g20920
rosa_chinensis	RchiOBHm_Chr1g0371751
rosa_laevigata	RLG00000026944
rosa_multiflora	Rmu_sc0001755.1_g000053
rosa_roxburghii	Rroxscaffold_4G00285450
rosa_rugosa	Rorug01G0366000 Rorug01G0366100 Rorug01G0366200
rosa_samantha	Rh1AG376100 Rh1BG339500 Rh1CG352600 Rh1DG370700
rosa_wichuraiana	Rw1G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	608
AccB1I	GGYRCC	1 cut(s)	1031
AciI	CCGC	2 cut(s)	180, 990
AclWI	GGATC	2 cut(s)	157, 945
AcsI	RAATTY	2 cut(s)	207, 576
AcvI	CACGTG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	1032
AfaI	GTAC	3 cut(s)	70, 85, 1006
AfiI	CCNNNNNNNGG	4 cut(s)	295, 743, 744, 1057
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	275, 371, 418, 532, 804
AjnI	CCWGG	1 cut(s)	1050
Alw26I	GTCTC	3 cut(s)	109, 175, 854
AlwI	GGATC	2 cut(s)	157, 945
AlwNI	CAGNNNCTG	1 cut(s)	623
ApeKI	GCWGC	5 cut(s)	124, 550, 590, 923, 992
ApoI	RAATTY	2 cut(s)	207, 576
Asp700I	GAANNNNTTC	2 cut(s)	438, 895
AspA2I	CCTAGG	1 cut(s)	977
AspLEI	GCGC	1 cut(s)	1034
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	168
AsuNHI	GCTAGC	1 cut(s)	1076
AvaII	GGWCC	1 cut(s)	389
AvrII	CCTAGG	1 cut(s)	977
BanI	GGYRCC	1 cut(s)	1031
BanII	GRGCYC	1 cut(s)	750
BbrPI	CACGTG	1 cut(s)	44
BbvI	GCAGC	5 cut(s)	136, 562, 602, 935, 979
BccI	CCATC	6 cut(s)	104, 380, 659, 881, 955, 1006
BceAI	ACGGC	3 cut(s)	106, 792, 911
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BciT130I	CCWGG	1 cut(s)	1052
BciVI	GTATCC	2 cut(s)	781, 794
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	3 cut(s)	109, 175, 854
BfaI	CTAG	3 cut(s)	836, 978, 1077
BfmI	CTRYAG	2 cut(s)	122, 795
BfoI	RGCGCY	1 cut(s)	1035
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	608
BfuI	GTATCC	2 cut(s)	781, 794
BisI	GCNGC	5 cut(s)	125, 551, 591, 924, 993
BlnI	CCTAGG	1 cut(s)	977
BlsI	GCNGC	5 cut(s)	126, 552, 592, 925, 994
Bme1390I	CCNGG	1 cut(s)	1052
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	2 cut(s)	287, 1033
BmrFI	CCNGG	1 cut(s)	1052
BmsI	GCATC	4 cut(s)	251, 577, 597, 754
BmtI	GCTAGC	1 cut(s)	1080
BpuEI	CTTGAG	1 cut(s)	836
BsaAI	YACGTR	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	1032
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	6 cut(s)	52, 156, 558, 738, 774, 977
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	4 cut(s)	295, 743, 744, 1057
Bse1I	ACTGG	1 cut(s)	678
BseBI	CCWGG	1 cut(s)	1052
BseDI	CCNNGG	6 cut(s)	52, 156, 558, 738, 774, 977
BseGI	GGATG	2 cut(s)	947, 976
BseLI	CCNNNNNNNGG	4 cut(s)	295, 743, 744, 1057
BseMII	CTCAG	1 cut(s)	736
BseNI	ACTGG	1 cut(s)	678
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	5 cut(s)	136, 562, 602, 935, 979
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	1076
BshNI	GGYRCC	1 cut(s)	1031
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	4 cut(s)	295, 743, 744, 1057
BsmAI	GTCTC	3 cut(s)	109, 175, 854
BsmBI	CGTCTC	2 cut(s)	109, 175
Bso31I	GGTCTC	1 cut(s)	854
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp1407I	TGTACA	2 cut(s)	83, 1004
Bsp143I	GATC	5 cut(s)	162, 625, 937, 1063, 1102
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	2 cut(s)	180, 990
BspCNI	CTCAG	1 cut(s)	735
BspLI	GGNNCC	2 cut(s)	287, 1033
BspMAI	CTGCAG	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	608
BspOI	GCTAGC	1 cut(s)	1080
BspPI	GGATC	2 cut(s)	157, 945
BspT107I	GGYRCC	1 cut(s)	1031
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	854
BsrGI	TGTACA	2 cut(s)	83, 1004
BsrI	ACTGG	1 cut(s)	678
BssECI	CCNNGG	6 cut(s)	52, 156, 558, 738, 774, 977
BssMI	GATC	5 cut(s)	162, 625, 937, 1063, 1102
BssNI	GRCGYC	1 cut(s)	1032
BssT1I	CCWWGG	2 cut(s)	156, 977
Bst2UI	CCWGG	1 cut(s)	1052
Bst4CI	ACNGT	3 cut(s)	251, 710, 1004
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	1032
BstAFI	CTTAAG	1 cut(s)	395
BstAUI	TGTACA	2 cut(s)	83, 1004
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	5 cut(s)	122, 318, 555, 1059, 1078
BstDEI	CTNAG	3 cut(s)	722, 728, 1110
BstDSI	CCRYGG	5 cut(s)	52, 156, 558, 738, 774
BstENI	CCTNNNNNAGG	1 cut(s)	1055
BstF5I	GGATG	2 cut(s)	947, 976
BstH2I	RGCGCY	1 cut(s)	1035
BstHHI	GCGC	1 cut(s)	1034
BstKTI	GATC	5 cut(s)	165, 628, 940, 1066, 1105
BstMAI	GTCTC	3 cut(s)	109, 175, 854
BstMBI	GATC	5 cut(s)	162, 625, 937, 1063, 1102
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 347, 1040, 1067
BstNI	CCWGG	1 cut(s)	1052
BstSCI	CCNGG	1 cut(s)	1050
BstSFI	CTRYAG	2 cut(s)	122, 795
BstV1I	GCAGC	5 cut(s)	136, 562, 602, 935, 979
BsuI	GTATCC	2 cut(s)	781, 794
BtgI	CCRYGG	5 cut(s)	52, 156, 558, 738, 774
BtsCI	GGATG	2 cut(s)	947, 976
BtsIMutI	CAGTG	1 cut(s)	1022
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	5 cut(s)	122, 318, 555, 1059, 1078
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	1034
Cfr13I	GGNCC	1 cut(s)	389
CsiI	ACCWGGT	1 cut(s)	1050
Csp6I	GTAC	3 cut(s)	69, 84, 1005
CviAII	CATG	6 cut(s)	157, 233, 326, 463, 629, 823
CviQI	GTAC	3 cut(s)	69, 84, 1005
DdeI	CTNAG	3 cut(s)	722, 728, 1110
DinI	GGCGCC	1 cut(s)	1033
DpnI	GATC	5 cut(s)	164, 627, 939, 1065, 1104
DpnII	GATC	5 cut(s)	162, 625, 937, 1063, 1102
DraI	TTTAAA	1 cut(s)	690
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	2 cut(s)	156, 977
Eco24I	GRGCYC	1 cut(s)	750
Eco31I	GGTCTC	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	389
Eco72I	CACGTG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	1055
EcoRII	CCWGG	1 cut(s)	1050
EcoT14I	CCWWGG	2 cut(s)	156, 977
EcoT38I	GRGCYC	1 cut(s)	750
EgeI	GGCGCC	1 cut(s)	1033
EheI	GGCGCC	1 cut(s)	1033
ErhI	CCWWGG	2 cut(s)	156, 977
Esp3I	CGTCTC	2 cut(s)	109, 175
FaeI	CATG	6 cut(s)	160, 236, 329, 466, 632, 826
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	6 cut(s)	156, 232, 325, 462, 628, 822
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	5 cut(s)	125, 551, 591, 924, 993
FokI	GGATG	2 cut(s)	934, 983
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	5 cut(s)	125, 551, 591, 924, 993
FspBI	CTAG	3 cut(s)	836, 978, 1077
GlaI	GCGC	1 cut(s)	1033
GluI	GCNGC	5 cut(s)	125, 551, 591, 924, 993
GsaI	CCCAGC	1 cut(s)	316
HaeII	RGCGCY	1 cut(s)	1035
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	1034
Hin1I	GRCGYC	1 cut(s)	1032
Hin1II	CATG	6 cut(s)	160, 236, 329, 466, 632, 826
Hin6I	GCGC	1 cut(s)	1032
HinP1I	GCGC	1 cut(s)	1032
HincII	GTYRAC	2 cut(s)	293, 734
HindII	GTYRAC	2 cut(s)	293, 734
HindIII	AAGCTT	3 cut(s)	318, 477, 641
HinfI	GANTC	2 cut(s)	47, 896
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	2 cut(s)	293, 734
Hpy188I	TCNGA	4 cut(s)	36, 109, 135, 942
Hpy188III	TCNNGA	4 cut(s)	257, 581, 809, 853
Hpy8I	GTNNAC	2 cut(s)	293, 734
HpyAV	CCTTC	4 cut(s)	162, 200, 356, 428
HpyCH4III	ACNGT	3 cut(s)	251, 710, 1004
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	9 cut(s)	124, 329, 430, 590, 598, 617, 637, 1057, 1070
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 347, 1040, 1067
HpyF3I	CTNAG	3 cut(s)	722, 728, 1110
HpySE526I	ACGT	1 cut(s)	43
Hsp92I	GRCGYC	1 cut(s)	1032
Hsp92II	CATG	6 cut(s)	160, 236, 329, 466, 632, 826
HspAI	GCGC	1 cut(s)	1032
KasI	GGCGCC	1 cut(s)	1031
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	5 cut(s)	162, 625, 937, 1063, 1102
LmnI	GCTCC	3 cut(s)	154, 291, 347
Lsp1109I	GCAGC	5 cut(s)	136, 562, 602, 935, 979
LweI	GCATC	4 cut(s)	251, 577, 597, 754
MabI	ACCWGGT	1 cut(s)	1050
MaeI	CTAG	3 cut(s)	836, 978, 1077
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	874
MalI	GATC	5 cut(s)	164, 627, 939, 1065, 1104
MboI	GATC	5 cut(s)	162, 625, 937, 1063, 1102
MboII	GAAGA	4 cut(s)	575, 596, 710, 896
MfeI	CAATTG	1 cut(s)	870
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	6 cut(s)	15, 207, 533, 576, 701, 870
Mly113I	GGCGCC	1 cut(s)	1032
MnlI	CCTC	6 cut(s)	184, 402, 559, 736, 874, 961
MroXI	GAANNNNTTC	2 cut(s)	438, 895
MseI	TTAA	6 cut(s)	18, 396, 444, 536, 689, 1083
MslI	CAYNNNNRTG	1 cut(s)	952
MspA1I	CMGCKG	1 cut(s)	992
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	1052
MunI	CAATTG	1 cut(s)	870
MvaI	CCWGG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	4 cut(s)	326, 347, 1040, 1067
NarI	GGCGCC	1 cut(s)	1032
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	5 cut(s)	162, 625, 937, 1063, 1102
NheI	GCTAGC	1 cut(s)	1076
NlaIII	CATG	6 cut(s)	160, 236, 329, 466, 632, 826
NlaIV	GGNNCC	2 cut(s)	287, 1033
NmuCI	GTSAC	1 cut(s)	874
PaqCI	CACCTGC	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	1 cut(s)	1092
PdmI	GAANNNNTTC	2 cut(s)	438, 895
PfeI	GAWTC	2 cut(s)	47, 896
PflFI	GACNNNGTC	1 cut(s)	506
PkrI	GCNGC	5 cut(s)	126, 552, 592, 925, 994
PluTI	GGCGCC	1 cut(s)	1035
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	1050
PspCI	CACGTG	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	1050
PspN4I	GGNNCC	2 cut(s)	287, 1033
PspPI	GGNCC	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	126
PstNI	CAGNNNCTG	1 cut(s)	623
PsyI	GACNNNGTC	1 cut(s)	506
RsaI	GTAC	3 cut(s)	70, 85, 1006
RsaNI	GTAC	3 cut(s)	69, 84, 1005
RseI	CAYNNNNRTG	1 cut(s)	952
SaqAI	TTAA	6 cut(s)	18, 396, 444, 536, 689, 1083
SatI	GCNGC	5 cut(s)	125, 551, 591, 924, 993
Sau3AI	GATC	5 cut(s)	162, 625, 937, 1063, 1102
Sau96I	GGNCC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	1052
SduI	GDGCHC	1 cut(s)	750
SexAI	ACCWGGT	1 cut(s)	1050
SfaNI	GCATC	4 cut(s)	251, 577, 597, 754
SfcI	CTRYAG	2 cut(s)	122, 795
SfoI	GGCGCC	1 cut(s)	1033
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	952
SmlI	CTYRAG	2 cut(s)	395, 851
SmoI	CTYRAG	2 cut(s)	395, 851
Sse9I	AATT	6 cut(s)	15, 207, 533, 576, 701, 870
SsiI	CCGC	2 cut(s)	180, 990
SspDI	GGCGCC	1 cut(s)	1031
SspI	AATATT	2 cut(s)	23, 492
SspMI	CTAG	3 cut(s)	836, 978, 1077
StyD4I	CCNGG	1 cut(s)	1050
StyI	CCWWGG	2 cut(s)	156, 977
TaaI	ACNGT	3 cut(s)	251, 710, 1004
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	2 cut(s)	523, 899
TasI	AATT	6 cut(s)	15, 207, 533, 576, 701, 870
TatI	WGTACW	3 cut(s)	68, 83, 1004
TfiI	GAWTC	2 cut(s)	47, 896
Tru1I	TTAA	6 cut(s)	18, 396, 444, 536, 689, 1083
Tru9I	TTAA	6 cut(s)	18, 396, 444, 536, 689, 1083
TscAI	CASTG	1 cut(s)	1029
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	5 cut(s)	124, 550, 590, 923, 992
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	3 cut(s)	314, 479, 489
TspGWI	ACGGA	4 cut(s)	69, 278, 575, 1084
TspRI	CASTG	1 cut(s)	1029
Tth111I	GACNNNGTC	1 cut(s)	506
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	1055
XapI	RAATTY	2 cut(s)	207, 576
XmaJI	CCTAGG	1 cut(s)	977
XmnI	GAANNNNTTC	2 cut(s)	438, 895
XspI	CTAG	3 cut(s)	836, 978, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.