Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009400

Physical Location & Seq

Genomic Coordinates Reverse (-)

6743055 .. 6745783

Gene Structure 2729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGACTGCGCTAGCAGTAATTTCAGAAGCTCTTCTCTGCTGCTTCATCAATGGCGATCTCCCTCTCCGCTTCCTCACCGTCTCTTATCGTCAAAGCTCGCCTTATTGAGAGTAAAGCGTTTGAACCTGGCTAAGCATGGCCGGCTGGTCACCAGAGCTTGTGGGTCTGACGAAAATAGCTCTGTTAATGGGTTTAACATCACACCCAACAAGCTTTTCATGCAAGAGGCCATTGGAGCTGAATATGGAGAAGGGTTTGAGACTTTTAGACCGGATGGACCTCTTAAGATTGATGTGGATTTTTTGAACGATAGACTGCAAGAAGGTTTTCTTAAACGGATAAGATATGCCATGAAGCCGGATGAAGCTTATGGGCTTATTTTCTCTTTCGACAATGTTGTGGCTGATACTCGAGCTTTGAAATTAAATGCTTGGAAGCAGCTTGCTGCAGAAGAGGGAAAGGAAATTCCAAAAGAGGCTGATGTGCAAGGACAGATGCTTTATGCAGGAGCTGATCATGTATTACATAAGCTTTTACTCTGGGATAAAGCAGAGACAGAACTGACTAGGTTGGCGTTAAGGTTTTCGCAACTATATTATGATAATCTTCTCAGGCTTAGTAAACCCATGGAGGGGCTCAAAGAATGGCTGGAGGCTGTATCTACAGCACGCATCCCTTGTGCTGTTGTTTCAAGTCTTGATCGCAGAAGCATGGTCAAAGCCCTAGAACGAATGGGACTCGAGAAGTATTTTCAGGCAATTGTGACCGAGGAAGATGGCATGGATTCTATAGCTCATAGGTTTCTGTCTGCAGCTGTGAAGCTGGATCGGAAGCCATCCAAGTGTGTAGTGTTTGAGGTTGAGCCTAGAGGTATAACTGCCGCTCACAACTGTACGATGATGGCTGTAGGATTGATCGGCGCCCACCCTGCGTATGATCTGGAGCAGGCTGATCTTGCAGTTGCTAGTTTCAATGAACTTTCCGTAATCAATCTCCGAAGACTATTTGCAAACAAGGGTTCTACATTCATGGACCTCCAAAAACAGATCATAGAGAAATCTCCACCGAAGAGGAAGCTTACAATCGATACTATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

366

Amino Acids

41.22

Weight (kDa)

8.66

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	127 - 302	6e-16	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	130 - 297	1.2e-07	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10970 AT3G10970 AT3G10970
fragaria_vesca	FvH4_7g25610
malus_domestica	MD01G1163400.v1.1 MD07G1231400.v1.1
prunus_persica	Prupe.2G261400_v2.0.a1 Prupe.2G261400_v2.0.a1
pyrus_communis	pycom01g17800 pycom07g20920
rosa_chinensis	RchiOBHm_Chr1g0371751
rosa_laevigata	RLG00000026944
rosa_multiflora	Rmu_sc0001755.1_g000053
rosa_roxburghii	Rroxscaffold_4G00285450
rosa_rugosa	Rorug01G0366000 Rorug01G0366100 Rorug01G0366200
rosa_samantha	Rh1AG376100 Rh1BG339500 Rh1CG352600 Rh1DG370700
rosa_wichuraiana	Rw1G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	920
AccBSI	CCGCTC	1 cut(s)	884
AciI	CCGC	2 cut(s)	68, 882
AclWI	GGATC	1 cut(s)	834
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	921
AfaI	GTAC	1 cut(s)	895
AfiI	CCNNNNNNNGG	2 cut(s)	632, 633
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	5 cut(s)	124, 307, 421, 693, 973
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
Alw26I	GTCTC	3 cut(s)	86, 254, 548
AlwI	GGATC	1 cut(s)	834
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	2 cut(s)	411, 740
AoxI	GGCC	2 cut(s)	139, 228
ApeKI	GCWGC	4 cut(s)	40, 439, 446, 812
ApoI	RAATTY	1 cut(s)	465
Asp700I	GAANNNNTTC	2 cut(s)	31, 327
AspLEI	GCGC	2 cut(s)	11, 923
AspS9I	GGNCC	2 cut(s)	278, 1033
AsuHPI	GGTGA	2 cut(s)	68, 142
AsuNHI	GCTAGC	1 cut(s)	11
AvaI	CYCGRG	2 cut(s)	411, 740
AvaII	GGWCC	2 cut(s)	278, 1033
BanI	GGYRCC	1 cut(s)	920
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	1006
BbvI	GCAGC	4 cut(s)	27, 433, 451, 824
BccI	CCATC	4 cut(s)	269, 770, 844, 895
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	86, 254, 548
BfaI	CTAG	5 cut(s)	12, 567, 725, 867, 966
BfmI	CTRYAG	5 cut(s)	447, 663, 789, 810, 906
BfoI	RGCGCY	1 cut(s)	924
BfrI	CTTAAG	1 cut(s)	284
BisI	GCNGC	5 cut(s)	41, 440, 447, 813, 882
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	5 cut(s)	42, 441, 448, 814, 883
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	2 cut(s)	278, 1033
BmeT110I	CYCGRG	2 cut(s)	411, 740
BmgT120I	GGNCC	2 cut(s)	278, 1033
BmiI	GGNNCC	1 cut(s)	922
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	486, 681
BmtI	GCTAGC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	1006
BpmI	CTGGAG	2 cut(s)	671, 962
Bpu1102I	GCTNAGC	1 cut(s)	132
Bsa29I	ATCGAT	1 cut(s)	1086
BsaHI	GRCGYC	1 cut(s)	921
BsaJI	CCNNGG	2 cut(s)	627, 768
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 633
Bse118I	RCCGGY	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	128
BseCI	ATCGAT	1 cut(s)	1086
BseDI	CCNNGG	2 cut(s)	627, 768
BseGI	GGATG	4 cut(s)	280, 367, 672, 836
BseLI	CCNNNNNNNGG	2 cut(s)	632, 633
BseMII	CTCAG	1 cut(s)	625
BseXI	GCAGC	4 cut(s)	27, 433, 451, 824
BshFI	GGCC	2 cut(s)	141, 230
BshNI	GGYRCC	1 cut(s)	920
BshVI	ATCGAT	1 cut(s)	1086
BsiHKCI	CYCGRG	2 cut(s)	411, 740
BsiSI	CCGG	3 cut(s)	142, 272, 359
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	2 cut(s)	632, 633
BsmAI	GTCTC	3 cut(s)	86, 254, 548
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	750
BsnI	GGCC	2 cut(s)	141, 230
BsoBI	CYCGRG	2 cut(s)	411, 740
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	8 cut(s)	56, 514, 700, 826, 915, 937, 952, 1047
Bsp1720I	GCTNAGC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	2 cut(s)	68, 882
BspANI	GGCC	2 cut(s)	141, 230
BspCNI	CTCAG	1 cut(s)	624
BspDI	ATCGAT	1 cut(s)	1086
BspLI	GGNNCC	1 cut(s)	922
BspMAI	CTGCAG	2 cut(s)	451, 814
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	834
BspQI	GCTCTTC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	920
BspTI	CTTAAG	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	884
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	627, 768
BssMI	GATC	8 cut(s)	56, 514, 700, 826, 915, 937, 952, 1047
BssNI	GRCGYC	1 cut(s)	921
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	80, 893
Bst6I	CTCTTC	3 cut(s)	37, 447, 1064
BstACI	GRCGYC	1 cut(s)	921
BstAFI	CTTAAG	1 cut(s)	284
BstC8I	GCNNGC	6 cut(s)	13, 99, 143, 444, 670, 948
BstDEI	CTNAG	3 cut(s)	132, 611, 617
BstDSI	CCRYGG	1 cut(s)	627
BstEII	GGTNACC	1 cut(s)	148
BstF5I	GGATG	4 cut(s)	280, 367, 672, 836
BstH2I	RGCGCY	1 cut(s)	924
BstHHI	GCGC	2 cut(s)	11, 923
BstKTI	GATC	8 cut(s)	59, 517, 703, 829, 918, 940, 955, 1050
BstMAI	GTCTC	3 cut(s)	86, 254, 548
BstMBI	GATC	8 cut(s)	56, 514, 700, 826, 915, 937, 952, 1047
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 220, 236, 929, 956
BstNI	CCWGG	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	5 cut(s)	447, 663, 789, 810, 906
BstV1I	GCAGC	4 cut(s)	27, 433, 451, 824
BstV2I	GAAGAC	1 cut(s)	1006
Bsu15I	ATCGAT	1 cut(s)	1086
BsuRI	GGCC	2 cut(s)	141, 230
BsuTUI	ATCGAT	1 cut(s)	1086
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	4 cut(s)	280, 367, 672, 836
Cac8I	GCNNGC	6 cut(s)	13, 99, 143, 444, 670, 948
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	2 cut(s)	11, 923
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	278, 1033
ClaI	ATCGAT	1 cut(s)	1086
Csp6I	GTAC	1 cut(s)	894
CviAII	CATG	8 cut(s)	137, 220, 352, 518, 628, 712, 781, 1030
CviQI	GTAC	1 cut(s)	894
DdeI	CTNAG	3 cut(s)	132, 611, 617
DinI	GGCGCC	1 cut(s)	922
DpnI	GATC	8 cut(s)	58, 516, 702, 828, 917, 939, 954, 1049
DpnII	GATC	8 cut(s)	56, 514, 700, 826, 915, 937, 952, 1047
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	3 cut(s)	37, 447, 1064
EarI	CTCTTC	3 cut(s)	37, 447, 1064
Eco130I	CCWWGG	1 cut(s)	627
Eco24I	GRGCYC	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	278, 1033
Eco88I	CYCGRG	2 cut(s)	411, 740
Eco91I	GGTNACC	1 cut(s)	148
EcoO65I	GGTNACC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	639
EgeI	GGCGCC	1 cut(s)	922
EheI	GGCGCC	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	8 cut(s)	140, 223, 355, 521, 631, 715, 784, 1033
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 315, 347
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	8 cut(s)	136, 219, 351, 517, 627, 711, 780, 1029
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	5 cut(s)	41, 440, 447, 813, 882
FokI	GGATG	4 cut(s)	287, 374, 659, 823
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	5 cut(s)	41, 440, 447, 813, 882
FspBI	CTAG	5 cut(s)	12, 567, 725, 867, 966
GlaI	GCGC	2 cut(s)	10, 922
GluI	GCNGC	5 cut(s)	41, 440, 447, 813, 882
GsuI	CTGGAG	2 cut(s)	671, 962
HaeII	RGCGCY	1 cut(s)	924
HaeIII	GGCC	2 cut(s)	141, 230
HapII	CCGG	3 cut(s)	142, 272, 359
HhaI	GCGC	2 cut(s)	11, 923
Hin1I	GRCGYC	1 cut(s)	921
Hin1II	CATG	8 cut(s)	140, 223, 355, 521, 631, 715, 784, 1033
Hin6I	GCGC	2 cut(s)	9, 921
HinP1I	GCGC	2 cut(s)	9, 921
HindIII	AAGCTT	4 cut(s)	212, 366, 530, 1076
HinfI	GANTC	2 cut(s)	738, 785
HpaII	CCGG	3 cut(s)	142, 272, 359
HphI	GGTGA	2 cut(s)	68, 142
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	5 cut(s)	26, 169, 831, 998, 1100
Hpy188III	TCNNGA	3 cut(s)	698, 742, 941
Hpy8I	GTNNAC	1 cut(s)	623
HpyAV	CCTTC	2 cut(s)	245, 317
HpyCH4III	ACNGT	2 cut(s)	80, 893
HpyCH4V	TGCA	8 cut(s)	223, 319, 449, 487, 506, 812, 959, 1010
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 220, 236, 929, 956
HpyF3I	CTNAG	3 cut(s)	132, 611, 617
Hsp92I	GRCGYC	1 cut(s)	921
Hsp92II	CATG	8 cut(s)	140, 223, 355, 521, 631, 715, 784, 1033
HspAI	GCGC	2 cut(s)	9, 921
KasI	GGCGCC	1 cut(s)	920
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	8 cut(s)	56, 514, 700, 826, 915, 937, 952, 1047
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	3 cut(s)	236, 509, 943
Lsp1109I	GCAGC	4 cut(s)	27, 433, 451, 824
LweI	GCATC	2 cut(s)	486, 681
MaeI	CTAG	5 cut(s)	12, 567, 725, 867, 966
MaeIII	GTNAC	2 cut(s)	148, 763
MalI	GATC	8 cut(s)	58, 516, 702, 828, 917, 939, 954, 1049
MbiI	CCGCTC	1 cut(s)	884
MboI	GATC	8 cut(s)	56, 514, 700, 826, 915, 937, 952, 1047
MboII	GAAGA	6 cut(s)	24, 464, 599, 785, 1011, 1081
MfeI	CAATTG	1 cut(s)	759
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	4 cut(s)	19, 422, 465, 759
Mly113I	GGCGCC	1 cut(s)	921
MlyI	GAGTC	1 cut(s)	732
MroNI	GCCGGC	1 cut(s)	141
MroXI	GAANNNNTTC	2 cut(s)	31, 327
MseI	TTAA	6 cut(s)	186, 195, 285, 333, 425, 578
MslI	CAYNNNNRTG	1 cut(s)	841
MspA1I	CMGCKG	1 cut(s)	815
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	3 cut(s)	142, 272, 359
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	5 cut(s)	142, 220, 236, 929, 956
NaeI	GCCGGC	1 cut(s)	143
NarI	GGCGCC	1 cut(s)	921
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	8 cut(s)	56, 514, 700, 826, 915, 937, 952, 1047
NgoMIV	GCCGGC	1 cut(s)	141
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	8 cut(s)	140, 223, 355, 521, 631, 715, 784, 1033
NlaIV	GGNNCC	1 cut(s)	922
NmuCI	GTSAC	2 cut(s)	148, 763
PaeR7I	CTCGAG	2 cut(s)	411, 740
PciSI	GCTCTTC	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	143
PdmI	GAANNNNTTC	2 cut(s)	31, 327
PfeI	GAWTC	1 cut(s)	785
PkrI	GCNGC	5 cut(s)	42, 441, 448, 814, 883
PleI	GAGTC	1 cut(s)	732
PluTI	GGCGCC	1 cut(s)	924
PpsI	GAGTC	1 cut(s)	732
Psp6I	CCWGG	1 cut(s)	126
PspEI	GGTNACC	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	922
PspPI	GGNCC	2 cut(s)	278, 1033
PspXI	VCTCGAGB	1 cut(s)	411
PstI	CTGCAG	2 cut(s)	451, 814
PstNI	CAGNNNCTG	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	1 cut(s)	895
RsaNI	GTAC	1 cut(s)	894
RseI	CAYNNNNRTG	1 cut(s)	841
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	6 cut(s)	186, 195, 285, 333, 425, 578
SatI	GCNGC	5 cut(s)	41, 440, 447, 813, 882
Sau3AI	GATC	8 cut(s)	56, 514, 700, 826, 915, 937, 952, 1047
Sau96I	GGNCC	2 cut(s)	278, 1033
SchI	GAGTC	1 cut(s)	732
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	639
SfaNI	GCATC	2 cut(s)	486, 681
SfcI	CTRYAG	5 cut(s)	447, 663, 789, 810, 906
SfoI	GGCGCC	1 cut(s)	922
Sfr274I	CTCGAG	2 cut(s)	411, 740
SinI	GGWCC	2 cut(s)	278, 1033
SlaI	CTCGAG	2 cut(s)	411, 740
SmiMI	CAYNNNNRTG	1 cut(s)	841
SmlI	CTYRAG	3 cut(s)	284, 411, 740
SmoI	CTYRAG	3 cut(s)	284, 411, 740
Sse9I	AATT	4 cut(s)	19, 422, 465, 759
SsiI	CCGC	2 cut(s)	68, 882
SspDI	GGCGCC	1 cut(s)	920
SspMI	CTAG	5 cut(s)	12, 567, 725, 867, 966
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	2 cut(s)	80, 893
TaqI	TCGA	4 cut(s)	390, 412, 741, 1086
TaqII	GACCGA	1 cut(s)	782
TasI	AATT	4 cut(s)	19, 422, 465, 759
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	1 cut(s)	785
Tru1I	TTAA	6 cut(s)	186, 195, 285, 333, 425, 578
Tru9I	TTAA	6 cut(s)	186, 195, 285, 333, 425, 578
TseFI	GTSAC	2 cut(s)	148, 763
TseI	GCWGC	4 cut(s)	40, 439, 446, 812
Tsp45I	GTSAC	2 cut(s)	148, 763
TspDTI	ATGAA	6 cut(s)	35, 208, 368, 378, 990, 1018
TspGWI	ACGGA	2 cut(s)	352, 973
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	278, 1033
XapI	RAATTY	1 cut(s)	465
XhoI	CTCGAG	2 cut(s)	411, 740
XmnI	GAANNNNTTC	2 cut(s)	31, 327
XspI	CTAG	5 cut(s)	12, 567, 725, 867, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.