Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009400

Physical Location & Seq

Genomic Coordinates Forward (+)

19526868 .. 19529564

Gene Structure 2697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGACTGCGGTTGCAGTAATTTCAGAAGCTCTTCTCTTCTTCATCAATGGCGATCTCCTCACCCTCTCTTATCCTCAAAGCTCACCTTTTTGAGAGTGAAGCGTTTGAACATGGCTAAACATGGCCGGGTGGTCACTAGGGCTTGTGGGTCTGACGAAACTAGCTCTGTTAATGGGTTTAACATAACACCCAATACGCTTTTCATGCAGGAGGCTATTGGAGCTGAATATGGAGAGGGGTTTGAGACTTTTAGACCGGATGGACCTCTTAAGATTGATGTGGATTTTTTGAACGATAGACTGCAAGAAGGTTTTCTTCAACGCATAAGATACGCCATGAAGCCAGATGAAGCTTATGGTCTTATTTTCTCTTTCGACAATGTTGTGGCTGATACTCGAGCTTTGAAATTAAATGCTTGGAAGCAGCTTGCTGCAGAAGAGGGAAAGGAAATTCCAAAAGAGGCTGATGTGCAAGGACAGATGCTTTATGCAGGTGCTGATCATGTATTACACAAGCTCTTACTCTGGGATGAAACAGAGACAGAACTGACTAGGTTGGCGTTAAGGTTTTCGCAACTATATTATGATAATCTTCTCAGGCTTAGTAAACCCATGGAGGGGCTCAAAGAATGGTTGGAGGCTGTATACACAGCACGCATCCCTTGTGCTGTTGTTTCAAGTCTGGATCGCAGAAGCATGGTCAAAGCCCTAGAAAGAATGGGACTTGAAAAGTATTTTCAGGCAATTGTGACCGAGGAAGATGGCATGGATTCAATAGCTCATAGGTTTCTTTCTGCAGCTATGAAGCTGGATCGGAAGCCATCCAAGTGTGTAGTGTTCGAGGATGAGCCTAGAGGTATAACTGCTGCTCACAACTGTACGATGATGGCCGTAGGATTGATTGGCGCCCACCCTGCGTATGATCTGGTGCAGGCTGATCTTGCAGTTGCTAGTTTCAATGAACTTTCAGTAATCAATCTACGAAGACTGTTTGCAAATAGGGGTTCTACATTCATGGACCTCCAAAAACAGATTATAGAGGAATCTCCACCGAAGAGGAAGCTTACAATCGATACTATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

362

Amino Acids

40.84

Weight (kDa)

6.28

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	122 - 297	1e-18	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	125 - 292	1.6e-10	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10970 AT3G10970 AT3G10970
fragaria_vesca	FvH4_7g25610
malus_domestica	MD01G1163400.v1.1 MD07G1231400.v1.1
prunus_persica	Prupe.2G261400_v2.0.a1 Prupe.2G261400_v2.0.a1
pyrus_communis	pycom01g17800 pycom07g20920
rosa_chinensis	RchiOBHm_Chr1g0371751
rosa_laevigata	RLG00000026944
rosa_multiflora	Rmu_sc0001755.1_g000053
rosa_roxburghii	Rroxscaffold_4G00285450
rosa_rugosa	Rorug01G0366000 Rorug01G0366100 Rorug01G0366200
rosa_samantha	Rh1AG376100 Rh1BG339500 Rh1CG352600 Rh1DG370700
rosa_wichuraiana	Rw1G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	905
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	2 cut(s)	693, 819
AcoI	YGGCCR	2 cut(s)	124, 888
AcsI	RAATTY	1 cut(s)	450
AcyI	GRCGYC	1 cut(s)	906
AfaI	GTAC	1 cut(s)	880
AfiI	CCNNNNNNNGG	2 cut(s)	617, 618
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	8 cut(s)	109, 292, 320, 406, 678, 728, 774, 958
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
Alw26I	GTCTC	2 cut(s)	239, 533
AlwI	GGATC	2 cut(s)	693, 819
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	396
AoxI	GGCC	2 cut(s)	124, 888
ApeKI	GCWGC	4 cut(s)	424, 431, 797, 866
ApoI	RAATTY	1 cut(s)	450
Asp700I	GAANNNNTTC	2 cut(s)	31, 312
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	2 cut(s)	263, 1018
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	53, 76
AvaI	CYCGRG	1 cut(s)	396
AvaII	GGWCC	2 cut(s)	263, 1018
BanI	GGYRCC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	991
BbvI	GCAGC	4 cut(s)	418, 436, 809, 853
BccI	CCATC	4 cut(s)	254, 755, 829, 880
BceAI	ACGGC	1 cut(s)	875
BclI	TGATCA	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	239, 533
BfaI	CTAG	6 cut(s)	138, 162, 552, 710, 852, 951
BfmI	CTRYAG	2 cut(s)	432, 795
BfoI	RGCGCY	1 cut(s)	909
BfrI	CTTAAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	482
BisI	GCNGC	4 cut(s)	425, 432, 798, 867
BlsI	GCNGC	4 cut(s)	426, 433, 799, 868
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	2 cut(s)	263, 1018
BmeT110I	CYCGRG	1 cut(s)	396
BmgT120I	GGNCC	2 cut(s)	263, 1018
BmiI	GGNNCC	1 cut(s)	907
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	471, 666
BpiI	GAAGAC	1 cut(s)	991
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	1071
BsaHI	GRCGYC	1 cut(s)	906
BsaJI	CCNNGG	2 cut(s)	612, 753
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 618
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	2 cut(s)	612, 753
BseGI	GGATG	5 cut(s)	265, 535, 657, 821, 850
BseLI	CCNNNNNNNGG	2 cut(s)	617, 618
BseMII	CTCAG	1 cut(s)	610
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	4 cut(s)	418, 436, 809, 853
BsgI	GTGCAG	1 cut(s)	950
BshFI	GGCC	2 cut(s)	126, 890
BshNI	GGYRCC	1 cut(s)	905
BshVI	ATCGAT	1 cut(s)	1071
BsiHKCI	CYCGRG	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	127, 257
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	2 cut(s)	617, 618
BsmAI	GTCTC	2 cut(s)	239, 533
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	126, 890
BsoBI	CYCGRG	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	6 cut(s)	53, 499, 685, 811, 922, 937
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	126, 890
BspCNI	CTCAG	1 cut(s)	609
BspDI	ATCGAT	1 cut(s)	1071
BspLI	GGNNCC	1 cut(s)	907
BspMAI	CTGCAG	2 cut(s)	436, 799
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	2 cut(s)	693, 819
BspQI	GCTCTTC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	905
BspTI	CTTAAG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	612, 753
BssMI	GATC	6 cut(s)	53, 499, 685, 811, 922, 937
BssNAI	GTATAC	1 cut(s)	646
BssNI	GRCGYC	1 cut(s)	906
BssT1I	CCWWGG	1 cut(s)	612
Bst1107I	GTATAC	1 cut(s)	646
Bst4CI	ACNGT	2 cut(s)	878, 990
Bst6I	CTCTTC	4 cut(s)	37, 42, 432, 1049
BstACI	GRCGYC	1 cut(s)	906
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	429, 655, 933
BstDEI	CTNAG	2 cut(s)	596, 602
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	5 cut(s)	265, 535, 657, 821, 850
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	6 cut(s)	56, 502, 688, 814, 925, 940
BstMAI	GTCTC	2 cut(s)	239, 533
BstMBI	GATC	6 cut(s)	53, 499, 685, 811, 922, 937
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 221, 914, 941
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	2 cut(s)	432, 795
BstV1I	GCAGC	4 cut(s)	418, 436, 809, 853
BstV2I	GAAGAC	1 cut(s)	991
BstZ17I	GTATAC	1 cut(s)	646
Bsu15I	ATCGAT	1 cut(s)	1071
BsuRI	GGCC	2 cut(s)	126, 890
BsuTUI	ATCGAT	1 cut(s)	1071
BtgI	CCRYGG	1 cut(s)	612
BtsCI	GGATG	5 cut(s)	265, 535, 657, 821, 850
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	3 cut(s)	429, 655, 933
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	1 cut(s)	908
Cfr13I	GGNCC	2 cut(s)	263, 1018
ClaI	ATCGAT	1 cut(s)	1071
Csp6I	GTAC	1 cut(s)	879
CviAII	CATG	9 cut(s)	112, 122, 205, 337, 503, 613, 697, 766, 1015
CviQI	GTAC	1 cut(s)	879
DdeI	CTNAG	2 cut(s)	596, 602
DinI	GGCGCC	1 cut(s)	907
DpnI	GATC	6 cut(s)	55, 501, 687, 813, 924, 939
DpnII	GATC	6 cut(s)	53, 499, 685, 811, 922, 937
EaeI	YGGCCR	2 cut(s)	124, 888
Eam1104I	CTCTTC	4 cut(s)	37, 42, 432, 1049
EarI	CTCTTC	4 cut(s)	37, 42, 432, 1049
Eco130I	CCWWGG	1 cut(s)	612
Eco24I	GRGCYC	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	263, 1018
Eco88I	CYCGRG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	624
EgeI	GGCGCC	1 cut(s)	907
EheI	GGCGCC	1 cut(s)	907
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	9 cut(s)	115, 125, 208, 340, 506, 616, 700, 769, 1018
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 300, 332
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	9 cut(s)	111, 121, 204, 336, 502, 612, 696, 765, 1014
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	4 cut(s)	425, 432, 798, 867
FokI	GGATG	5 cut(s)	272, 542, 644, 808, 857
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	4 cut(s)	425, 432, 798, 867
FspBI	CTAG	6 cut(s)	138, 162, 552, 710, 852, 951
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	4 cut(s)	425, 432, 798, 867
HaeII	RGCGCY	1 cut(s)	909
HaeIII	GGCC	2 cut(s)	126, 890
HapII	CCGG	2 cut(s)	127, 257
HhaI	GCGC	1 cut(s)	908
Hin1I	GRCGYC	1 cut(s)	906
Hin1II	CATG	9 cut(s)	115, 125, 208, 340, 506, 616, 700, 769, 1018
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HindIII	AAGCTT	2 cut(s)	351, 1061
HinfI	GANTC	2 cut(s)	770, 1043
HpaII	CCGG	2 cut(s)	127, 257
HphI	GGTGA	2 cut(s)	53, 76
Hpy166II	GTNNAC	2 cut(s)	608, 646
Hpy188I	TCNGA	4 cut(s)	26, 154, 816, 1085
Hpy188III	TCNNGA	1 cut(s)	683
Hpy8I	GTNNAC	2 cut(s)	608, 646
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	2 cut(s)	878, 990
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 221, 914, 941
HpyF3I	CTNAG	2 cut(s)	596, 602
Hsp92I	GRCGYC	1 cut(s)	906
Hsp92II	CATG	9 cut(s)	115, 125, 208, 340, 506, 616, 700, 769, 1018
HspAI	GCGC	1 cut(s)	906
KasI	GGCGCC	1 cut(s)	905
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	6 cut(s)	53, 499, 685, 811, 922, 937
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	4 cut(s)	418, 436, 809, 853
LweI	GCATC	2 cut(s)	471, 666
MaeI	CTAG	6 cut(s)	138, 162, 552, 710, 852, 951
MaeIII	GTNAC	2 cut(s)	133, 748
MalI	GATC	6 cut(s)	55, 501, 687, 813, 924, 939
MboI	GATC	6 cut(s)	53, 499, 685, 811, 922, 937
MboII	GAAGA	9 cut(s)	24, 29, 32, 308, 449, 584, 770, 996, 1066
MfeI	CAATTG	1 cut(s)	744
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	4 cut(s)	19, 407, 450, 744
Mly113I	GGCGCC	1 cut(s)	906
MmeI	TCCRAC	1 cut(s)	615
MroXI	GAANNNNTTC	2 cut(s)	31, 312
MseI	TTAA	5 cut(s)	171, 180, 270, 410, 563
MslI	CAYNNNNRTG	1 cut(s)	826
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	2 cut(s)	127, 257
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	744
MwoI	GCNNNNNNNGC	4 cut(s)	205, 221, 914, 941
NarI	GGCGCC	1 cut(s)	906
NciI	CCSGG	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	612
NdeII	GATC	6 cut(s)	53, 499, 685, 811, 922, 937
NlaIII	CATG	9 cut(s)	115, 125, 208, 340, 506, 616, 700, 769, 1018
NlaIV	GGNNCC	1 cut(s)	907
NmuCI	GTSAC	2 cut(s)	133, 748
PaeR7I	CTCGAG	1 cut(s)	396
PaqCI	CACCTGC	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	37
PdmI	GAANNNNTTC	2 cut(s)	31, 312
PfeI	GAWTC	2 cut(s)	770, 1043
PkrI	GCNGC	4 cut(s)	426, 433, 799, 868
PluTI	GGCGCC	1 cut(s)	909
PspN4I	GGNNCC	1 cut(s)	907
PspPI	GGNCC	2 cut(s)	263, 1018
PspXI	VCTCGAGB	1 cut(s)	396
PstI	CTGCAG	2 cut(s)	436, 799
PstNI	CAGNNNCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	880
RsaNI	GTAC	1 cut(s)	879
RseI	CAYNNNNRTG	1 cut(s)	826
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	5 cut(s)	171, 180, 270, 410, 563
SatI	GCNGC	4 cut(s)	425, 432, 798, 867
Sau3AI	GATC	6 cut(s)	53, 499, 685, 811, 922, 937
Sau96I	GGNCC	2 cut(s)	263, 1018
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	2 cut(s)	471, 666
SfcI	CTRYAG	2 cut(s)	432, 795
SfoI	GGCGCC	1 cut(s)	907
Sfr274I	CTCGAG	1 cut(s)	396
SinI	GGWCC	2 cut(s)	263, 1018
SlaI	CTCGAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	826
SmlI	CTYRAG	2 cut(s)	269, 396
SmoI	CTYRAG	2 cut(s)	269, 396
Sse9I	AATT	4 cut(s)	19, 407, 450, 744
SsiI	CCGC	1 cut(s)	9
SspDI	GGCGCC	1 cut(s)	905
SspMI	CTAG	6 cut(s)	138, 162, 552, 710, 852, 951
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	878, 990
TaqI	TCGA	4 cut(s)	375, 397, 840, 1071
TaqII	GACCGA	1 cut(s)	767
TasI	AATT	4 cut(s)	19, 407, 450, 744
TfiI	GAWTC	2 cut(s)	770, 1043
Tru1I	TTAA	5 cut(s)	171, 180, 270, 410, 563
Tru9I	TTAA	5 cut(s)	171, 180, 270, 410, 563
TseFI	GTSAC	2 cut(s)	133, 748
TseI	GCWGC	4 cut(s)	424, 431, 797, 866
Tsp45I	GTSAC	2 cut(s)	133, 748
TspDTI	ATGAA	8 cut(s)	32, 193, 353, 363, 546, 818, 975, 1003
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	263, 1018
XapI	RAATTY	1 cut(s)	450
XhoI	CTCGAG	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	2 cut(s)	31, 312
XspI	CTAG	6 cut(s)	138, 162, 552, 710, 852, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.