Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009400

Physical Location & Seq

Genomic Coordinates Forward (+)

48172524 .. 48173789

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0366100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGATTGTTGTTTCTCAAAATGGAGTTCAGAAACAATTTGCTGCTGAAGAAATCTCATCTATGGTTCTTGCAAAGATGCGGGAGATTTCTGAGGCTTATCTTTGCTCACCAGTGAAGAAAGCAGTTATCACCGTGCCTGCTTACTTCAATAACTCACAACGTCAGGCTACAAGAGATGCAGGTGTCACTGCCGGCCTAAATGTGATACGTATCATCAATGAACCAACTGCTGCAGCCATCGCTTATGGACTTGACAAGAAGGCTGGTTGGTATAGCAAGAGGTATGTGCTGATATTTGACTTGGGGGGTGGTACTTTGGATGTCTCACTACTTTCCATAGCTGATAGTGTCTTTGAAGTGAAGGCCACTAATGGAGACACTCACCTTGGAGGTGAAGACTTCGATCATAGAATGGTGGATTATTGCGTTGAGCAATTTAAGAGGAAGCATAAAGTTGACATCACTAGAAATCTCAAGGCTCTTAGGAGGTTGCGAAATGCTTGTGAAAATGCAAAAAGGAAGCTTTCATTTATGTCTGAGACTGACATTGATGTCGATTGTCTGGACAAGGGTATCGATTTCTTCTTAACTATTACTCGTGCCAAATTCGAGCAACTCAATATGGATTTGTTTTACAAATGTATGGAGCCTGTAAAGAAGTGTTTGGAAGATGCTAACATGGAGATAAGTAGCGTCCATGATGTTGTTCTTGCTGGTGGCTCATCTAGAATCCCTAAGGTCCAGCAGTTACTGCAGGGTGTGTTTAATGGGAAGGAGCTGTGTAAGGCCATTCATCCTGATGAGGCTATAGCGTATGGTGCTGCTATTCAAGCTGCTGCCTTGAGTAGTGGGAACCTAGCTGGGAAACTTAACGACTTCAATCTCTTGGATGTCACCCCTCTATCACTTGGGGTGAAGACTTGTTGGGAAAATCTTATGTCGGTTGTGATTCCAAGGAACAGCCAAATTCCCATCACCAAGAACGAAACTTATGTTACTTCCAGTGACAATCAAACTGTTGCCCAGTTCTGCATTTTTGAAGGTGAGAGTAAACTCACTGCAGATAACAACTTTTTGGGTGATTTTGTACTCAATGACATTCCTCCAGCTCTTGCAGGTGAAGCTAAATTTGATACTTGCTTTCATATTGATGCAAATGGTATCTTGAGTGTCTCTGCTGTGGATATGTCCACCGGCCAAAAGAAAGAAATTACAATCAACAGTGACAGTAGAACTTTTCAAGGAATTGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

418

Amino Acids

45.92

Weight (kDa)

5.54

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	4 - 411	6.3e-156	Hsp70 protein
MreB_Mbl	PF06723	19 - 277	5.8e-18	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10970 AT3G10970 AT3G10970
fragaria_vesca	FvH4_7g25610
malus_domestica	MD01G1163400.v1.1 MD07G1231400.v1.1
prunus_persica	Prupe.2G261400_v2.0.a1 Prupe.2G261400_v2.0.a1
pyrus_communis	pycom01g17800 pycom07g20920
rosa_chinensis	RchiOBHm_Chr1g0371751
rosa_laevigata	RLG00000026944
rosa_multiflora	Rmu_sc0001755.1_g000053
rosa_roxburghii	Rroxscaffold_4G00285450
rosa_rugosa	Rorug01G0366000 Rorug01G0366100 Rorug01G0366200
rosa_samantha	Rh1AG376100 Rh1BG339500 Rh1CG352600 Rh1DG370700
rosa_wichuraiana	Rw1G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	170, 1106
AasI	GACNNNNNNGTC	1 cut(s)	551
Acc36I	ACCTGC	2 cut(s)	170, 1106
AciI	CCGC	1 cut(s)	79
AcoI	YGGCCR	1 cut(s)	1195
AcsI	RAATTY	3 cut(s)	605, 966, 1127
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	2 cut(s)	313, 1089
AgsI	TTSAA	6 cut(s)	148, 356, 830, 880, 1040, 1241
AluBI	AGCT	7 cut(s)	341, 523, 778, 833, 860, 1109, 1124
AluI	AGCT	7 cut(s)	341, 523, 778, 833, 860, 1109, 1124
Alw26I	GTCTC	4 cut(s)	328, 369, 533, 1177
AlwNI	CAGNNNCTG	1 cut(s)	751
AoxI	GGCC	4 cut(s)	193, 363, 786, 1195
ApeKI	GCWGC	6 cut(s)	41, 230, 233, 821, 833, 836
ApoI	RAATTY	3 cut(s)	605, 966, 1127
AspS9I	GGNCC	1 cut(s)	739
AvaII	GGWCC	1 cut(s)	739
AxyI	CCTNAGG	1 cut(s)	735
BaeI	ACNNNNGTAYC	2 cut(s)	556, 589
BauI	CACGAG	1 cut(s)	597
BbsI	GAAGAC	2 cut(s)	402, 923
BbvI	GCAGC	6 cut(s)	28, 217, 245, 808, 820, 823
BccI	CCATC	2 cut(s)	245, 980
BcoDI	GTCTC	4 cut(s)	328, 369, 533, 1177
BfaI	CTAG	3 cut(s)	465, 726, 857
BfmI	CTRYAG	4 cut(s)	231, 752, 807, 1059
BfuAI	ACCTGC	2 cut(s)	170, 1106
BglII	AGATCT	1 cut(s)	1251
BisI	GCNGC	6 cut(s)	42, 231, 234, 822, 834, 837
BlsI	GCNGC	6 cut(s)	43, 232, 235, 823, 835, 838
Bme18I	GGWCC	1 cut(s)	739
BmgT120I	GGNCC	1 cut(s)	739
BmiI	GGNNCC	2 cut(s)	648, 854
BmrI	ACTGGG	1 cut(s)	1018
BmsI	GCATC	4 cut(s)	66, 166, 661, 1141
BmuI	ACTGGG	1 cut(s)	1018
BpiI	GAAGAC	2 cut(s)	402, 923
BpmI	CTGGAG	1 cut(s)	1089
BpuEI	CTTGAG	3 cut(s)	458, 862, 1186
Bsa29I	ATCGAT	1 cut(s)	576
BsaAI	YACGTR	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	385, 953
Bse118I	RCCGGY	2 cut(s)	191, 1193
Bse1I	ACTGG	3 cut(s)	110, 1002, 1024
Bse21I	CCTNAGG	1 cut(s)	735
Bse8I	GATNNNNATC	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	385, 953
BseGI	GGATG	3 cut(s)	325, 793, 895
BseJI	GATNNNNATC	1 cut(s)	209
BseMII	CTCAG	2 cut(s)	81, 528
BseNI	ACTGG	3 cut(s)	110, 1002, 1024
BseXI	GCAGC	6 cut(s)	28, 217, 245, 808, 820, 823
BseYI	CCCAGC	1 cut(s)	860
BshFI	GGCC	4 cut(s)	195, 365, 788, 1197
BshVI	ATCGAT	1 cut(s)	576
BsiSI	CCGG	2 cut(s)	192, 1194
BsmAI	GTCTC	4 cut(s)	328, 369, 533, 1177
BsnI	GGCC	4 cut(s)	195, 365, 788, 1197
Bsp143I	GATC	2 cut(s)	403, 1251
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	4 cut(s)	195, 365, 788, 1197
BspCNI	CTCAG	2 cut(s)	82, 529
BspDI	ATCGAT	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	648, 854
BspMAI	CTGCAG	3 cut(s)	235, 756, 1063
BspMI	ACCTGC	2 cut(s)	170, 1106
BsrFI	RCCGGY	2 cut(s)	191, 1193
BsrI	ACTGG	3 cut(s)	110, 1002, 1024
BssAI	RCCGGY	2 cut(s)	191, 1193
BssECI	CCNNGG	2 cut(s)	385, 953
BssMI	GATC	2 cut(s)	403, 1251
BssSI	CACGAG	1 cut(s)	597
BssT1I	CCWWGG	2 cut(s)	385, 953
Bst2BI	CACGAG	1 cut(s)	597
Bst4CI	ACNGT	4 cut(s)	133, 1018, 1223, 1229
BstAPI	GCANNNNNTGC	1 cut(s)	751
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	138, 193
BstDEI	CTNAG	4 cut(s)	90, 482, 537, 735
BstF5I	GGATG	3 cut(s)	325, 793, 895
BstKTI	GATC	2 cut(s)	406, 1254
BstMAI	GTCTC	4 cut(s)	328, 369, 533, 1177
BstMBI	GATC	2 cut(s)	403, 1251
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 751, 818, 830, 1121
BstSFI	CTRYAG	4 cut(s)	231, 752, 807, 1059
BstSNI	TACGTA	1 cut(s)	209
BstV1I	GCAGC	6 cut(s)	28, 217, 245, 808, 820, 823
BstV2I	GAAGAC	2 cut(s)	402, 923
BstX2I	RGATCY	1 cut(s)	1251
BstYI	RGATCY	1 cut(s)	1251
Bsu15I	ATCGAT	1 cut(s)	576
Bsu36I	CCTNAGG	1 cut(s)	735
BsuRI	GGCC	4 cut(s)	195, 365, 788, 1197
BsuTUI	ATCGAT	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	325, 793, 895
BtsI	GCAGTG	2 cut(s)	186, 1056
BtsIMutI	CAGTG	5 cut(s)	117, 186, 1009, 1056, 1228
BveI	ACCTGC	2 cut(s)	170, 1106
Cac8I	GCNNGC	2 cut(s)	138, 193
CaiI	CAGNNNCTG	1 cut(s)	751
Cfr10I	RCCGGY	2 cut(s)	191, 1193
Cfr13I	GGNCC	1 cut(s)	739
ClaI	ATCGAT	1 cut(s)	576
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	2 cut(s)	312, 1088
CviAII	CATG	2 cut(s)	679, 698
CviQI	GTAC	2 cut(s)	312, 1088
DdeI	CTNAG	4 cut(s)	90, 482, 537, 735
DpnI	GATC	2 cut(s)	405, 1253
DpnII	GATC	2 cut(s)	403, 1251
DrdI	GACNNNNNNGTC	1 cut(s)	551
DseDI	GACNNNNNNGTC	1 cut(s)	551
EaeI	YGGCCR	1 cut(s)	1195
Eco105I	TACGTA	1 cut(s)	209
Eco130I	CCWWGG	2 cut(s)	385, 953
Eco47I	GGWCC	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	735
EcoT14I	CCWWGG	2 cut(s)	385, 953
ErhI	CCWWGG	2 cut(s)	385, 953
FaeI	CATG	2 cut(s)	682, 701
FatI	CATG	2 cut(s)	678, 697
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	6 cut(s)	42, 231, 234, 822, 834, 837
FokI	GGATG	3 cut(s)	332, 780, 902
Fsp4HI	GCNGC	6 cut(s)	42, 231, 234, 822, 834, 837
FspBI	CTAG	3 cut(s)	465, 726, 857
GluI	GCNGC	6 cut(s)	42, 231, 234, 822, 834, 837
GsaI	CCCAGC	1 cut(s)	864
GsuI	CTGGAG	1 cut(s)	1089
HaeIII	GGCC	4 cut(s)	195, 365, 788, 1197
HapII	CCGG	2 cut(s)	192, 1194
HgaI	GACGC	1 cut(s)	682
Hin1II	CATG	2 cut(s)	682, 701
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	2 cut(s)	729, 949
HpaII	CCGG	2 cut(s)	192, 1194
Hpy166II	GTNNAC	3 cut(s)	457, 1052, 1191
Hpy188I	TCNGA	4 cut(s)	30, 91, 538, 1256
Hpy188III	TCNNGA	4 cut(s)	563, 726, 797, 1165
Hpy8I	GTNNAC	3 cut(s)	457, 1052, 1191
HpyAV	CCTTC	4 cut(s)	253, 355, 766, 1034
HpyCH4III	ACNGT	4 cut(s)	133, 1018, 1223, 1229
HpyCH4IV	ACGT	2 cut(s)	160, 208
HpyCH4V	TGCA	9 cut(s)	71, 179, 233, 512, 754, 1032, 1061, 1115, 1154
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 751, 818, 830, 1121
HpyF3I	CTNAG	4 cut(s)	90, 482, 537, 735
HpySE526I	ACGT	2 cut(s)	160, 208
Hsp92II	CATG	2 cut(s)	682, 701
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	403, 1251
LmnI	GCTCC	2 cut(s)	646, 775
Lsp1109I	GCAGC	6 cut(s)	28, 217, 245, 808, 820, 823
LweI	GCATC	4 cut(s)	66, 166, 661, 1141
MaeI	CTAG	3 cut(s)	465, 726, 857
MaeII	ACGT	2 cut(s)	160, 208
MaeIII	GTNAC	6 cut(s)	184, 747, 892, 994, 1004, 1223
MalI	GATC	2 cut(s)	405, 1253
MboI	GATC	2 cut(s)	403, 1251
MboII	GAAGA	6 cut(s)	59, 127, 407, 574, 680, 928
MflI	RGATCY	1 cut(s)	1251
MluCI	AATT	7 cut(s)	35, 434, 605, 966, 1127, 1209, 1245
MnlI	CCTC	8 cut(s)	85, 273, 383, 435, 480, 796, 909, 1113
MroNI	GCCGGC	1 cut(s)	191
MseI	TTAA	4 cut(s)	438, 587, 765, 870
MslI	CAYNNNNRTG	2 cut(s)	798, 1149
MspI	CCGG	2 cut(s)	192, 1194
MwoI	GCNNNNNNNGC	5 cut(s)	239, 751, 818, 830, 1121
NaeI	GCCGGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	403, 1251
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	682, 701
NlaIV	GGNNCC	2 cut(s)	648, 854
NmuCI	GTSAC	4 cut(s)	184, 892, 1004, 1223
PaqCI	CACCTGC	2 cut(s)	170, 1106
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	729, 949
PkrI	GCNGC	6 cut(s)	43, 232, 235, 823, 835, 838
Ppu21I	YACGTR	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	860
PspN4I	GGNNCC	2 cut(s)	648, 854
PspPI	GGNCC	1 cut(s)	739
PstI	CTGCAG	3 cut(s)	235, 756, 1063
PstNI	CAGNNNCTG	1 cut(s)	751
PsuI	RGATCY	1 cut(s)	1251
RsaI	GTAC	2 cut(s)	313, 1089
RsaNI	GTAC	2 cut(s)	312, 1088
RseI	CAYNNNNRTG	2 cut(s)	798, 1149
SaqAI	TTAA	4 cut(s)	438, 587, 765, 870
SatI	GCNGC	6 cut(s)	42, 231, 234, 822, 834, 837
Sau3AI	GATC	2 cut(s)	403, 1251
Sau96I	GGNCC	1 cut(s)	739
SfaNI	GCATC	4 cut(s)	66, 166, 661, 1141
SfcI	CTRYAG	4 cut(s)	231, 752, 807, 1059
SinI	GGWCC	1 cut(s)	739
SmiMI	CAYNNNNRTG	2 cut(s)	798, 1149
SmlI	CTYRAG	3 cut(s)	473, 841, 1165
SmoI	CTYRAG	3 cut(s)	473, 841, 1165
SnaBI	TACGTA	1 cut(s)	209
Sse9I	AATT	7 cut(s)	35, 434, 605, 966, 1127, 1209, 1245
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	3 cut(s)	465, 726, 857
StyI	CCWWGG	2 cut(s)	385, 953
TaaI	ACNGT	4 cut(s)	133, 1018, 1223, 1229
TaiI	ACGT	2 cut(s)	163, 211
TaqI	TCGA	4 cut(s)	402, 555, 576, 609
TasI	AATT	7 cut(s)	35, 434, 605, 966, 1127, 1209, 1245
TatI	WGTACW	1 cut(s)	1087
TfiI	GAWTC	2 cut(s)	729, 949
Tru1I	TTAA	4 cut(s)	438, 587, 765, 870
Tru9I	TTAA	4 cut(s)	438, 587, 765, 870
TscAI	CASTG	5 cut(s)	117, 193, 1009, 1063, 1228
TseFI	GTSAC	4 cut(s)	184, 892, 1004, 1223
TseI	GCWGC	6 cut(s)	41, 230, 233, 821, 833, 836
Tsp45I	GTSAC	4 cut(s)	184, 892, 1004, 1223
TspDTI	ATGAA	4 cut(s)	234, 516, 782, 1133
TspRI	CASTG	5 cut(s)	117, 193, 1009, 1063, 1228
VpaK11BI	GGWCC	1 cut(s)	739
XapI	RAATTY	3 cut(s)	605, 966, 1127
XbaI	TCTAGA	1 cut(s)	725
XspI	CTAG	3 cut(s)	465, 726, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.