Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009400

Physical Location & Seq

Genomic Coordinates Forward (+)

48102989 .. 48152831

Gene Structure 49843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0366000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGCGGAGGAGGAGAGGGTCATGCAATAGGGATTGACTTAGGGACAACCAACTCGTGCGTTGCGGTGTGGGAGAACGATCACGTTGAAGTGATAGTGAATGATCAGGGCAGTAAGACCACTCCTTCTTGTGTTGCTTTCACTGATACAGAGACCTTGGTAGGTAATGCCGCACTTGACCAGATTATTCGAAACCCCGCCAACACCATTTTTGATGCAAAGAGGTTAATTGGCAGGAAATTCAGTGACACCACTGTTCAAAGTGATTTGAAACTCTGGCCATTCAAGGTCATTAAGGGTCCTGATGATAAGCTGATGATTGTGGCTACAAAAGATGCACGTGCCACTGCAGGCCTAAATGTGATGCGCATCATCAATGAACCAACCGCTGCAGCTATTGCATATGGCATTGACAAGAAGGCTGGTGGGTATAGGAAGAAAAATGTGCTGATATTTGATTTAGGTGGCGGTACTTTAGATGTGTCACTACTGAGCATAGGTGATGGTGTTTTTGAAGTTAAAGCCACGGCAGGAGAGACTCATCTTGGAGGTGGAGACTTTGATAACAGAATGGCAAAGGGGAGGCTTTCATCTACAACTACAACAGACATTGAAATTCACTGTTTGGATAAAGAGAATGATTTCTATGCAACTATTACCCGTGCTAAATTTGAACAACTCAATATTGATTTCTTCAACAAATGTATGAAGCCTGTGGAGAACTGTTTGAGGAATGCTAACATGGATGTGAACTATGTTGACGATGTTGTTCTTGCTGGTGGATCATCTAGAATTCCAAAAGTGCAGCAGTTACTACAGGACTTGTTCAAGGGGAAGGAGCTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

282

Amino Acids

30.48

Weight (kDa)

5.47

Isoelectric Point (pI)

27.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 108	1e-38	Hsp70 protein
MreB_Mbl	PF06723	9 - 174	8.2e-07	MreB/Mbl protein
HSP70	PF00012	109 - 192	2.9e-37	Hsp70 protein
HSP70	PF00012	192 - 281	7.9e-23	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10970 AT3G10970 AT3G10970
fragaria_vesca	FvH4_7g25610
malus_domestica	MD01G1163400.v1.1 MD07G1231400.v1.1
prunus_persica	Prupe.2G261400_v2.0.a1 Prupe.2G261400_v2.0.a1
pyrus_communis	pycom01g17800 pycom07g20920
rosa_chinensis	RchiOBHm_Chr1g0371751
rosa_laevigata	RLG00000026944
rosa_multiflora	Rmu_sc0001755.1_g000053
rosa_roxburghii	Rroxscaffold_4G00285450
rosa_rugosa	Rorug01G0366000 Rorug01G0366100 Rorug01G0366200
rosa_samantha	Rh1AG376100 Rh1BG339500 Rh1CG352600 Rh1DG370700
rosa_wichuraiana	Rw1G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	368
AciI	CCGC	6 cut(s)	6, 65, 171, 198, 387, 468
AclWI	GGATC	1 cut(s)	790
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	4 cut(s)	239, 615, 668, 792
AcvI	CACGTG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	472
AgsI	TTSAA	9 cut(s)	89, 260, 271, 286, 515, 614, 674, 697, 829
AluBI	AGCT	3 cut(s)	313, 395, 841
AluI	AGCT	3 cut(s)	313, 395, 841
Alw26I	GTCTC	3 cut(s)	146, 530, 549
AlwI	GGATC	1 cut(s)	790
AoxI	GGCC	2 cut(s)	278, 352
ApeKI	GCWGC	3 cut(s)	389, 392, 805
ApoI	RAATTY	4 cut(s)	239, 615, 668, 792
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	512
AsuII	TTCGAA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	280
BauI	CACGAG	1 cut(s)	55
BbrPI	CACGTG	1 cut(s)	341
BbvI	GCAGC	3 cut(s)	376, 404, 817
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	543
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	146, 530, 549
BfaI	CTAG	2 cut(s)	789, 847
BfmI	CTRYAG	3 cut(s)	348, 390, 815
BisI	GCNGC	4 cut(s)	171, 390, 393, 806
BlsI	GCNGC	4 cut(s)	172, 391, 394, 807
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	4 cut(s)	205, 325, 354, 378
Bpu14I	TTCGAA	1 cut(s)	190
BsaAI	YACGTR	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	156, 525
Bse8I	GATNNNNATC	1 cut(s)	368
BseDI	CCNNGG	2 cut(s)	156, 525
BseGI	GGATG	1 cut(s)	751
BseJI	GATNNNNATC	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	482
BseRI	GAGGAG	2 cut(s)	24, 27
BseXI	GCAGC	3 cut(s)	376, 404, 817
BsgI	GTGCAG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	280, 354
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	3 cut(s)	146, 530, 549
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	2 cut(s)	280, 354
Bso31I	GGTCTC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	79, 103, 782
BspACI	CCGC	6 cut(s)	6, 65, 171, 198, 387, 468
BspANI	GGCC	2 cut(s)	280, 354
BspCNI	CTCAG	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	300
BspMAI	CTGCAG	2 cut(s)	352, 394
BspPI	GGATC	1 cut(s)	790
BspT104I	TTCGAA	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	156, 525
BssMI	GATC	3 cut(s)	79, 103, 782
BssSI	CACGAG	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	55
Bst4CI	ACNGT	3 cut(s)	256, 623, 725
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	2 cut(s)	40, 491
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	751
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	3 cut(s)	82, 106, 785
BstMAI	GTCTC	3 cut(s)	146, 530, 549
BstMBI	GATC	3 cut(s)	79, 103, 782
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstSFI	CTRYAG	3 cut(s)	348, 390, 815
BstV1I	GCAGC	3 cut(s)	376, 404, 817
BsuRI	GGCC	2 cut(s)	280, 354
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	751
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	5 cut(s)	141, 250, 252, 345, 619
Cac8I	GCNNGC	1 cut(s)	352
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	2 cut(s)	23, 742
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	2 cut(s)	40, 491
DpnI	GATC	3 cut(s)	81, 105, 784
DpnII	GATC	3 cut(s)	79, 103, 782
EaeI	YGGCCR	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	299
Eco72I	CACGTG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	792
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	26, 745
FaiI	YATR	9 cut(s)	24, 403, 405, 432, 497, 648, 707, 743, 756
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	22, 741
FauI	CCCGC	1 cut(s)	205
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	4 cut(s)	171, 390, 393, 806
FokI	GGATG	1 cut(s)	758
Fsp4HI	GCNGC	4 cut(s)	171, 390, 393, 806
FspAI	RTGCGCAY	1 cut(s)	368
FspBI	CTAG	2 cut(s)	789, 847
FspI	TGCGCA	1 cut(s)	368
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	4 cut(s)	171, 390, 393, 806
HaeIII	GGCC	2 cut(s)	280, 354
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	26, 745
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HinfI	GANTC	1 cut(s)	538
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	751, 760
Hpy188III	TCNNGA	2 cut(s)	302, 789
Hpy8I	GTNNAC	2 cut(s)	751, 760
HpyAV	CCTTC	3 cut(s)	135, 412, 829
HpyCH4III	ACNGT	3 cut(s)	256, 623, 725
HpyCH4IV	ACGT	2 cut(s)	84, 340
HpyCH4V	TGCA	8 cut(s)	26, 218, 338, 350, 392, 401, 650, 805
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	40, 491
HpySE526I	ACGT	2 cut(s)	84, 340
Hsp92II	CATG	2 cut(s)	26, 745
HspAI	GCGC	1 cut(s)	367
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	79, 103, 782
LmnI	GCTCC	1 cut(s)	838
Lsp1109I	GCAGC	3 cut(s)	376, 404, 817
LweI	GCATC	4 cut(s)	205, 325, 354, 378
MaeI	CTAG	2 cut(s)	789, 847
MaeII	ACGT	2 cut(s)	84, 340
MaeIII	GTNAC	3 cut(s)	245, 483, 810
MalI	GATC	3 cut(s)	81, 105, 784
MboI	GATC	3 cut(s)	79, 103, 782
MboII	GAAGA	2 cut(s)	448, 685
MlsI	TGGCCA	1 cut(s)	280
MluCI	AATT	5 cut(s)	228, 239, 615, 668, 792
MluNI	TGGCCA	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	532
MnlI	CCTC	6 cut(s)	5, 10, 216, 542, 576, 723
Mox20I	TGGCCA	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	280
MseI	TTAA	3 cut(s)	227, 294, 519
MslI	CAYNNNNRTG	1 cut(s)	746
Msp20I	TGGCCA	1 cut(s)	280
MspA1I	CMGCKG	1 cut(s)	389
Mva1269I	GAATGC	1 cut(s)	739
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	3 cut(s)	79, 103, 782
NlaIII	CATG	2 cut(s)	26, 745
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	2 cut(s)	245, 483
NsbI	TGCGCA	1 cut(s)	368
NspV	TTCGAA	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	354
PctI	GAATGC	1 cut(s)	739
PdmI	GAANNNNTTC	1 cut(s)	641
PkrI	GCNGC	4 cut(s)	172, 391, 394, 807
PleI	GAGTC	1 cut(s)	532
PmaCI	CACGTG	1 cut(s)	341
PmlI	CACGTG	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	532
Ppu21I	YACGTR	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
PspCI	CACGTG	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PstI	CTGCAG	2 cut(s)	352, 394
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	746
SaqAI	TTAA	3 cut(s)	227, 294, 519
SatI	GCNGC	4 cut(s)	171, 390, 393, 806
Sau3AI	GATC	3 cut(s)	79, 103, 782
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	532
SfaNI	GCATC	4 cut(s)	205, 325, 354, 378
SfcI	CTRYAG	3 cut(s)	348, 390, 815
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	746
Sse9I	AATT	5 cut(s)	228, 239, 615, 668, 792
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	6 cut(s)	6, 65, 171, 198, 387, 468
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	2 cut(s)	789, 847
StuI	AGGCCT	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	256, 623, 725
TaiI	ACGT	2 cut(s)	87, 343
TaqI	TCGA	1 cut(s)	190
TasI	AATT	5 cut(s)	228, 239, 615, 668, 792
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	3 cut(s)	227, 294, 519
Tru9I	TTAA	3 cut(s)	227, 294, 519
TscAI	CASTG	5 cut(s)	148, 250, 259, 352, 626
TseFI	GTSAC	2 cut(s)	245, 483
TseI	GCWGC	3 cut(s)	389, 392, 805
Tsp45I	GTSAC	2 cut(s)	245, 483
TspDTI	ATGAA	3 cut(s)	393, 579, 722
TspRI	CASTG	5 cut(s)	148, 250, 259, 352, 626
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	4 cut(s)	239, 615, 668, 792
XbaI	TCTAGA	1 cut(s)	788
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	2 cut(s)	789, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.