AT3G11070

Outer membrane OMP85 family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
3467704 .. 3470233
2530 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11070.1

Sequence Viewer

Length: 1563 bp
ATGGCGAATCCGACGGAGAACCTCGACGCGAATCCACAAATCCGAGAACCAGAAGCTGAAGAAGAAGTTGAAGAACTGAACGGATACGAAGGTGACGATGGAGGAGAAGATGACGATGGAGAAGACGATGACACCGAGTCGAAATCTCAAACGCGCGAAAGCGGATCCAGTGTAGACAGAATCAAGGCGGAATCGCTATTCCGTCGGATGCGAGCTGCTCCTGTGCCGGTGCGTGTTCACGACGTGATTATCGGTGGAAACGAGAAGACTAAGGACCATATCATTGAAGCGGAAGTGGATGCTGTGAGAGAGGCGACCACGTTGCAAGAGCTTCTCGAAGCATCTAGGGTTGCCAATTCGAATCTCCGTGCGTTAGATATCTTTGATTCCGTCAACATTACGCTTGATTCTGGTCCTCCTGAGCTTCCTGGTACTACCAATGTGGTAATCGACGTCGTCGAGAGCAAAAGCCCTCTCACCGGCCAAATTGGTGCCTACACTAGAGCAGAGGCTAGATCATCAAGCGTTGAAGCATCTTTGAAGTATAAGAACATTTTTGGTTATGGAGATATTTGGGACGGGTCTATAGTTTATGGCTGTGACAACTCTGCTGAGGTTGGTTTGGGGATGTATTTGCCAAGGTTCAGAGGATTGTCTACTCCTTTTACTTCCCGTCTTTTCCTTTCGACTCAAGACTGGCTTAAGTTTTCATCGTATAAAGAACGATCCCTCGGTCTTTCTCTTGGTCTTTTCTCAAGCAAGTATCACGAGCTGATCTACACGATTGCGTGGCGTAATCTGATCGATCCATCACAAGCTGCTGCAGTATCAATAAGGAGACAACTGGGACACAGTCTGCTTTCTGCGTTGAAGTATACTTTTAGGTTTGATCAGAGAAACTCAAGCTTGAGGCCAACTAATGGATATGCTTTCATCTCTACATCTCAAATTGGTGGTCTTGCTCCTGATAGCCGAAGCTTACGCTTCCTGAAGCAGGAAGTTGATCTTCGGTATGCTGTTCCGTTTGGATTTTACAATGCTGCTATAAATTTTGGTGTGTCTGGGGGTGTCTCCTTTCCGTGGGGAAGCGGATACCAGAACCGTCCTTCATCTATACCAGAGAGATTCTTCTTGGGTGGCAATTCATCGCCTGTGTGCTCCTTGAGTGGGCCATCTGCGCTGTGGGGATTCAAGACCAGAGGAGTTGGTCCCAGTGAGCCAAAGAGGAAAGGTGATAGTGAACGGGATTTTGTTGGAGGAGATGCGGCAGTGACTGCATTTGCGGATCTCTCATTTGATTTGCCAGTGAGATGGTTAAGAGAGAGAGGAATCCACGGTCATGTGTTTGCCTGTGCAGGGAATATGGCGAAGTTATCAGAGAATGAGTTTAGAAACTTCACTGCTCCAAAGTTCTTGGAGACATTCAGAACTTCAGTTGGTGCTGGAATCGTCTTACCAACAAGCCTATTCCGTATGGAGCTTAACTACTGCCACATATTGAAGAAACAGGAACACGATCAAGCGAGATCAGGGGTTTTCTTGACATTCTCTGCTTCGTCCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

520

Amino Acids

57.21

Weight (kDa)

5.36

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POTRA PF07244 77 - 154 7.1e-06 Surface antigen variable number repeat
Omp85 PF01103 184 - 509 3.7e-32 Omp85 superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 456
AccB1I GGYRCC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 920
AccI GTMKAC 3 cut(s) 174, 656, 875
AccII CGCG 3 cut(s) 29, 154, 156
AciI CCGC 6 cut(s) 162, 188, 290, 1089, 1265, 1283
AclWI GGATC 5 cut(s) 159, 172, 720, 800, 1293
AcoI YGGCCR 1 cut(s) 481
AcsI RAATTY 1 cut(s) 1048
AcuI CTGAAG 3 cut(s) 78, 1010, 1416
AcyI GRCGYC 1 cut(s) 453
AdeI CACNNNGTG 1 cut(s) 244
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 6 cut(s) 479, 920, 994, 1080, 1167, 1356
AflII CTTAAG 1 cut(s) 701
AgsI TTSAA 7 cut(s) 71, 287, 530, 541, 871, 1192, 1501
AhdI GACNNNNNGTC 1 cut(s) 136
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 9 cut(s) 56, 215, 331, 424, 772, 818, 906, 978, 1480
AluI AGCT 9 cut(s) 56, 215, 331, 424, 772, 818, 906, 978, 1480
Alw21I GWGCWC 1 cut(s) 1160
Alw26I GTCTC 3 cut(s) 832, 1075, 1412
AlwI GGATC 5 cut(s) 159, 172, 720, 800, 1293
AlwNI CAGNNNCTG 2 cut(s) 56, 1274
AoxI GGCC 3 cut(s) 481, 911, 1169
ApeKI GCWGC 4 cut(s) 215, 818, 821, 1040
ApoI RAATTY 1 cut(s) 1048
ArsI GACNNNNNNTTYG 2 cut(s) 940, 972
AspLEI GCGC 2 cut(s) 156, 1180
AspS9I GGNCC 4 cut(s) 274, 413, 1169, 1208
AsuHPI GGTGA 3 cut(s) 104, 469, 1244
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 3 cut(s) 274, 413, 1208
BaeI ACNNNNGTAYC 2 cut(s) 76, 109
BamHI GGATCC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 491
BauI CACGAG 1 cut(s) 767
BbsI GAAGAC 2 cut(s) 129, 272
Bbv12I GWGCWC 1 cut(s) 1160
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 4 cut(s) 202, 805, 808, 1027
BccI CCATC 5 cut(s) 92, 110, 817, 1180, 1305
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciT130I CCWGG 1 cut(s) 429
BciVI GTATCC 2 cut(s) 77, 1085
BclI TGATCA 1 cut(s) 889
BcoDI GTCTC 3 cut(s) 832, 1075, 1412
BfaI CTAG 3 cut(s) 345, 501, 513
BfmI CTRYAG 2 cut(s) 585, 822
BfrI CTTAAG 1 cut(s) 701
BfuI GTATCC 2 cut(s) 77, 1085
BisI GCNGC 5 cut(s) 216, 819, 822, 1041, 1266
BlsI GCNGC 5 cut(s) 217, 820, 823, 1042, 1267
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 3 cut(s) 274, 413, 1208
BmeRI GACNNNNNGTC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 4 cut(s) 274, 413, 1169, 1208
BmiI GGNNCC 3 cut(s) 166, 493, 1210
BmrFI CCNGG 1 cut(s) 429
BmrI ACTGGG 2 cut(s) 854, 1206
BmsI GCATC 5 cut(s) 198, 289, 350, 542, 1252
BmuI ACTGGG 2 cut(s) 854, 1206
BpiI GAAGAC 2 cut(s) 129, 272
Bpu10I CCTNAGC 2 cut(s) 420, 612
Bpu14I TTCGAA 1 cut(s) 359
BpuEI CTTGAG 5 cut(s) 675, 739, 886, 928, 1183
Bsa29I ATCGAT 1 cut(s) 804
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 4 cut(s) 638, 730, 1079, 1333
Bsc4I CCNNNNNNNGG 6 cut(s) 479, 920, 994, 1080, 1167, 1356
Bse118I RCCGGY 2 cut(s) 226, 479
Bse1I ACTGG 5 cut(s) 168, 701, 849, 1212, 1304
BseBI CCWGG 1 cut(s) 429
BseCI ATCGAT 1 cut(s) 804
BseDI CCNNGG 4 cut(s) 638, 730, 1079, 1333
BseGI GGATG 3 cut(s) 213, 304, 633
BseLI CCNNNNNNNGG 6 cut(s) 479, 920, 994, 1080, 1167, 1356
BseMII CTCAG 2 cut(s) 411, 603
BseNI ACTGG 5 cut(s) 168, 701, 849, 1212, 1304
BseRI GAGGAG 3 cut(s) 117, 1215, 1272
BseXI GCAGC 4 cut(s) 202, 805, 808, 1027
BsgI GTGCAG 1 cut(s) 1374
Bsh1236I CGCG 3 cut(s) 29, 154, 156
BshFI GGCC 3 cut(s) 483, 913, 1171
BshNI GGYRCC 1 cut(s) 491
BshVI ATCGAT 1 cut(s) 804
BsiHKAI GWGCWC 1 cut(s) 1160
BsiSI CCGG 2 cut(s) 227, 480
BslFI GGGAC 3 cut(s) 590, 861, 1194
BslI CCNNNNNNNGG 6 cut(s) 479, 920, 994, 1080, 1167, 1356
BsmAI GTCTC 3 cut(s) 832, 1075, 1412
BsmFI GGGAC 3 cut(s) 590, 861, 1194
BsnI GGCC 3 cut(s) 483, 913, 1171
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 1160
BspACI CCGC 6 cut(s) 162, 188, 290, 1089, 1265, 1283
BspANI GGCC 3 cut(s) 483, 913, 1171
BspCNI CTCAG 2 cut(s) 412, 604
BspDI ATCGAT 1 cut(s) 804
BspFNI CGCG 3 cut(s) 29, 154, 156
BspLI GGNNCC 3 cut(s) 166, 493, 1210
BspMAI CTGCAG 1 cut(s) 826
BspPI GGATC 5 cut(s) 159, 172, 720, 800, 1293
BspT104I TTCGAA 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 491
BspTI CTTAAG 1 cut(s) 701
BsrFI RCCGGY 2 cut(s) 226, 479
BsrI ACTGG 5 cut(s) 168, 701, 849, 1212, 1304
BssAI RCCGGY 2 cut(s) 226, 479
BssECI CCNNGG 4 cut(s) 638, 730, 1079, 1333
BssNAI GTATAC 1 cut(s) 876
BssNI GRCGYC 1 cut(s) 453
BssSI CACGAG 1 cut(s) 767
BssT1I CCWWGG 1 cut(s) 638
Bst1107I GTATAC 1 cut(s) 876
Bst2BI CACGAG 1 cut(s) 767
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 3 cut(s) 854, 1103, 1337
BstACI GRCGYC 1 cut(s) 453
BstAFI CTTAAG 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 1274
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 270, 420, 612
BstDSI CCRYGG 2 cut(s) 1079, 1333
BstENI CCTNNNNNAGG 1 cut(s) 992
BstF5I GGATG 3 cut(s) 213, 304, 633
BstFNI CGCG 3 cut(s) 29, 154, 156
BstHHI GCGC 2 cut(s) 156, 1180
BstMAI GTCTC 3 cut(s) 832, 1075, 1412
BstMWI GCNNNNNNNGC 2 cut(s) 1177, 1274
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 2 cut(s) 585, 822
BstUI CGCG 3 cut(s) 29, 154, 156
BstV1I GCAGC 4 cut(s) 202, 805, 808, 1027
BstV2I GAAGAC 2 cut(s) 129, 272
BstX2I RGATCY 2 cut(s) 164, 1285
BstXI CCANNNNNNTGG 1 cut(s) 1311
BstYI RGATCY 2 cut(s) 164, 1285
BstZ17I GTATAC 1 cut(s) 876
Bsu15I ATCGAT 1 cut(s) 804
BsuI GTATCC 2 cut(s) 77, 1085
BsuRI GGCC 3 cut(s) 483, 913, 1171
BsuTUI ATCGAT 1 cut(s) 804
BtgI CCRYGG 2 cut(s) 1079, 1333
BtgZI GCGATG 1 cut(s) 1131
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 3 cut(s) 213, 304, 633
BtsI GCAGTG 2 cut(s) 1275, 1398
BtsIMutI CAGTG 5 cut(s) 175, 1219, 1275, 1311, 1398
Cac8I GCNNGC 1 cut(s) 213
CaiI CAGNNNCTG 2 cut(s) 56, 1274
CfoI GCGC 2 cut(s) 156, 1180
Cfr10I RCCGGY 2 cut(s) 226, 479
Cfr13I GGNCC 4 cut(s) 274, 413, 1169, 1208
ClaI ATCGAT 1 cut(s) 804
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 432
CviAII CATG 1 cut(s) 1340
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 3 cut(s) 270, 420, 612
DraIII CACNNNGTG 1 cut(s) 244
DriI GACNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 481
Eam1105I GACNNNNNGTC 1 cut(s) 136
EciI GGCGGA 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 638
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 3 cut(s) 274, 413, 1208
Eco57I CTGAAG 3 cut(s) 78, 1010, 1416
EcoNI CCTNNNNNAGG 1 cut(s) 992
EcoRII CCWGG 1 cut(s) 427
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 638
ErhI CCWWGG 1 cut(s) 638
FaeI CATG 1 cut(s) 1343
FalI AAGNNNNNCTT 4 cut(s) 684, 716, 990, 1022
FaqI GGGAC 3 cut(s) 590, 861, 1194
FatI CATG 1 cut(s) 1339
FbaI TGATCA 1 cut(s) 889
FblI GTMKAC 3 cut(s) 174, 656, 875
Fnu4HI GCNGC 5 cut(s) 216, 819, 822, 1041, 1266
FokI GGATG 3 cut(s) 220, 311, 640
Fsp4HI GCNGC 5 cut(s) 216, 819, 822, 1041, 1266
FspBI CTAG 3 cut(s) 345, 501, 513
GlaI GCGC 2 cut(s) 155, 1179
GluI GCNGC 5 cut(s) 216, 819, 822, 1041, 1266
HaeIII GGCC 3 cut(s) 483, 913, 1171
HapII CCGG 2 cut(s) 227, 480
HgaI GACGC 1 cut(s) 35
HhaI GCGC 2 cut(s) 156, 1180
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 1 cut(s) 1343
Hin6I GCGC 2 cut(s) 154, 1178
HinP1I GCGC 2 cut(s) 154, 1178
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 2 cut(s) 904, 976
HpaII CCGG 2 cut(s) 227, 480
HphI GGTGA 3 cut(s) 104, 469, 1244
Hpy166II GTNNAC 6 cut(s) 175, 238, 394, 657, 876, 1241
Hpy188I TCNGA 8 cut(s) 12, 44, 207, 647, 801, 894, 1378, 1427
Hpy8I GTNNAC 6 cut(s) 175, 238, 394, 657, 876, 1241
Hpy99I CGWCG 7 cut(s) 16, 29, 207, 245, 455, 458, 461
HpyAV CCTTC 2 cut(s) 83, 1116
HpyCH4III ACNGT 3 cut(s) 854, 1103, 1337
HpyCH4IV ACGT 3 cut(s) 243, 320, 453
HpyCH4V TGCA 4 cut(s) 325, 824, 1277, 1355
HpyF10VI GCNNNNNNNGC 2 cut(s) 1177, 1274
HpyF3I CTNAG 3 cut(s) 270, 420, 612
HpySE526I ACGT 3 cut(s) 243, 320, 453
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 1 cut(s) 1343
HspAI GCGC 2 cut(s) 154, 1178
Ksp22I TGATCA 1 cut(s) 889
LmnI GCTCC 5 cut(s) 223, 967, 1163, 1408, 1477
Lsp1109I GCAGC 4 cut(s) 202, 805, 808, 1027
LweI GCATC 5 cut(s) 198, 289, 350, 542, 1252
MaeI CTAG 3 cut(s) 345, 501, 513
MaeII ACGT 3 cut(s) 243, 320, 453
MaeIII GTNAC 3 cut(s) 92, 599, 1270
MboII GAAGA 9 cut(s) 71, 74, 83, 119, 134, 277, 998, 1120, 1513
MflI RGATCY 2 cut(s) 164, 1285
MhlI GDGCHC 1 cut(s) 1160
MluCI AATT 5 cut(s) 355, 486, 948, 1048, 1141
MlyI GAGTC 2 cut(s) 146, 682
MmeI TCCRAC 3 cut(s) 35, 185, 1234
MseI TTAA 3 cut(s) 702, 1316, 1482
MslI CAYNNNNRTG 1 cut(s) 1338
MspCI CTTAAG 1 cut(s) 701
MspI CCGG 2 cut(s) 227, 480
MspR9I CCNGG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 429
MvnI CGCG 3 cut(s) 29, 154, 156
MwoI GCNNNNNNNGC 2 cut(s) 1177, 1274
NlaIII CATG 1 cut(s) 1343
NlaIV GGNNCC 3 cut(s) 166, 493, 1210
NmuCI GTSAC 3 cut(s) 92, 599, 1270
NspV TTCGAA 1 cut(s) 359
PcsI WCGNNNNNNNCGW 4 cut(s) 93, 132, 258, 456
PflFI GACNNNGTC 2 cut(s) 455, 852
PflMI CCANNNNNTGG 1 cut(s) 920
PkrI GCNGC 5 cut(s) 217, 820, 823, 1042, 1267
PleI GAGTC 2 cut(s) 145, 682
PpsI GAGTC 2 cut(s) 145, 682
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 3 cut(s) 166, 493, 1210
PspPI GGNCC 4 cut(s) 274, 413, 1169, 1208
PstI CTGCAG 1 cut(s) 826
PstNI CAGNNNCTG 2 cut(s) 56, 1274
PsuI RGATCY 2 cut(s) 164, 1285
PsyI GACNNNGTC 2 cut(s) 455, 852
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 1338
SaqAI TTAA 3 cut(s) 702, 1316, 1482
SatI GCNGC 5 cut(s) 216, 819, 822, 1041, 1266
Sau96I GGNCC 4 cut(s) 274, 413, 1169, 1208
SchI GAGTC 2 cut(s) 146, 682
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 1160
SfaNI GCATC 5 cut(s) 198, 289, 350, 542, 1252
SfcI CTRYAG 2 cut(s) 585, 822
SfuI TTCGAA 1 cut(s) 359
SinI GGWCC 3 cut(s) 274, 413, 1208
SmiMI CAYNNNNRTG 1 cut(s) 1338
SmlI CTYRAG 6 cut(s) 690, 701, 754, 901, 907, 1162
SmoI CTYRAG 6 cut(s) 690, 701, 754, 901, 907, 1162
Sse9I AATT 5 cut(s) 355, 486, 948, 1048, 1141
SsiI CCGC 6 cut(s) 162, 188, 290, 1089, 1265, 1283
SspMI CTAG 3 cut(s) 345, 501, 513
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 638
TaaI ACNGT 3 cut(s) 854, 1103, 1337
TaiI ACGT 3 cut(s) 246, 323, 456
TaqI TCGA 8 cut(s) 24, 140, 336, 359, 450, 459, 686, 804
TaqII GACCGA 1 cut(s) 722
TasI AATT 5 cut(s) 355, 486, 948, 1048, 1141
TauI GCSGC 1 cut(s) 1268
Tru1I TTAA 3 cut(s) 702, 1316, 1482
Tru9I TTAA 3 cut(s) 702, 1316, 1482
TscAI CASTG 5 cut(s) 175, 1219, 1275, 1311, 1405
TseFI GTSAC 3 cut(s) 92, 599, 1270
TseI GCWGC 4 cut(s) 215, 818, 821, 1040
Tsp45I GTSAC 3 cut(s) 92, 599, 1270
TspDTI ATGAA 4 cut(s) 699, 922, 1098, 1134
TspGWI ACGGA 8 cut(s) 29, 96, 191, 356, 379, 1011, 1068, 1460
TspRI CASTG 5 cut(s) 175, 1219, 1275, 1311, 1405
Tth111I GACNNNGTC 2 cut(s) 455, 852
Van91I CCANNNNNTGG 1 cut(s) 920
Vha464I CTTAAG 1 cut(s) 701
VpaK11BI GGWCC 3 cut(s) 274, 413, 1208
XagI CCTNNNNNAGG 1 cut(s) 992
XapI RAATTY 1 cut(s) 1048
XcmI CCANNNNNNNNNTGG 1 cut(s) 1179
XmiI GTMKAC 3 cut(s) 174, 656, 875
XspI CTAG 3 cut(s) 345, 501, 513
ZraI GACGTC 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.