pycom07g20400

Sorting and assembly machinery

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
22509892 .. 22513070
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g20400.3

Sequence Viewer

Length: 1272 bp
ATGCAAGAGCTGCTCGAGGCCGCCGCAATTGCAAATGCGAAGCTTCAGCAGCTTGAAATATTCGATGCGGTTCGAATCACGCTCGATTCTGGCCCGCCGGAGCTGCCTGGAACTACCAATGTTATTGTGGAGGTCGTCGAAACTAAGAGTCCGATTTCTGGCGAAATCGGTGCTTACACGAAGCCGGCGGCTAGGTCATGGACTGCTGAAGGAACACTTAAGTTCAAAAATCTGCTCGGATATGGGGATTTGTGGGATAGTTCTTTGGCATATGGGCCCAACCAAACGTCGGAGTTAAGTGCTGGTCTGTTTTTGCCCAGGTTCAAAGGGTTTGTAACTCCAGTGACGGCACGAGCATTCCTGCTTTCCCAAGATTGGGTGGAATTCTCTTCTTATAAAGAGCGCATGATGGGGCTCTCTCTTGGACTGATTTCATCAAAACACCATGATTTGGCATACAATCTGGGTTGGCGAACCCTAGCAGACCCATCACAATTGGCCTCAAGGTCAATAAGAAGGCAGCTCGGCCATGGATTACTTTCTTCAATCAAATACACATTTAAGAATGATAGGAGAAATTCACCTTTGAGGCCAACTCGAGGTTACTCATTTGTTTCAACGAGTCATATTGGTGGCATTGCACCTGATCATCGAAGCACGAGGTTTTTGCGTCAGGAGTTCGATCTTCGTTATGCGGTTCCATTAGGATTTTATCATGCTGCACTTAATTTTGGGATCTCCGCAGGAGTTATTTTTCCATGGGGGAGTGGATTCTTGAACAAGCCCTCATCCCTTCCAGAGCGGTTCTTCCTGGGTGGTGATTTCTCTCCAGTTTGCACTGTTGGGGGCCCTACGACAGTGTGGGGATTCAAGACAAGGGGACTAGGCCCCACTGAACCAAGAAGGCATGTCGGAGATAATTCTAATGAGGAGAATTCAGAATCCCCTGGAAGAGATTCTGTTGGCGGAGATCTTGCTGTTTCTGCGTTTGCAGACATTTCATTTGATCTTCCACTTCGCTGGTTAAAACAACATGGAGTGCATGGTCATATTTTTGCAGGTGCAGGGAATCTGGCGAAATTGACAGAGAACGAATTCCGAAACTTTTCTGCCCCGAAGTTCCTTCAGTCATTTCGAAGTTCTGTGGGAGCAGGGATTGTTGTCCCTACCAAATTCTTCCGCCTAGAGTGCAACTACTACTATATACTGAAGCAATTTGAGCATGACCGTGGGAAGACTGGCTTTCGCTTCAGCATCTCAGCTCCGTCATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

424

Amino Acids

46.64

Weight (kDa)

9.36

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AarI CACCTGC 1 cut(s) 1049
Acc36I ACCTGC 1 cut(s) 1049
AccB7I CCANNNNNTGG 1 cut(s) 451
AccBSI CCGCTC 1 cut(s) 802
AclWI GGATC 1 cut(s) 743
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 5 cut(s) 383, 577, 934, 1094, 1172
AcuI CTGAAG 5 cut(s) 29, 228, 1109, 1229, 1234
AfiI CCNNNNNNNGG 6 cut(s) 158, 289, 375, 376, 451, 599
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 7 cut(s) 56, 226, 325, 546, 618, 778, 871
AjnI CCWGG 4 cut(s) 106, 317, 810, 946
AluBI AGCT 6 cut(s) 10, 43, 52, 103, 523, 1262
AluI AGCT 6 cut(s) 10, 43, 52, 103, 523, 1262
AlwI GGATC 1 cut(s) 743
Ama87I CYCGRG 2 cut(s) 14, 597
AoxI GGCC 8 cut(s) 18, 91, 275, 498, 526, 590, 847, 886
ApaI GGGCCC 2 cut(s) 279, 851
ApeKI GCWGC 5 cut(s) 10, 49, 103, 520, 719
ApoI RAATTY 5 cut(s) 383, 577, 934, 1094, 1172
ArsI GACNNNNNNTTYG 2 cut(s) 986, 1018
Asp700I GAANNNNTTC 3 cut(s) 955, 1094, 1105
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 6 cut(s) 92, 275, 276, 847, 848, 887
AsuHPI GGTGA 2 cut(s) 573, 830
AsuII TTCGAA 2 cut(s) 73, 1135
AvaI CYCGRG 2 cut(s) 14, 597
BaeGI GKGCMC 2 cut(s) 279, 851
BanII GRGCYC 3 cut(s) 279, 417, 851
BauI CACGAG 2 cut(s) 351, 658
BbsI GAAGAC 1 cut(s) 1241
BbvI GCAGC 4 cut(s) 61, 90, 532, 706
BccI CCATC 2 cut(s) 403, 496
BceAI ACGGC 1 cut(s) 363
BcgI CGANNNNNNTGC 4 cut(s) 152, 186, 649, 683
BciT130I CCWGG 4 cut(s) 108, 319, 812, 948
BclI TGATCA 1 cut(s) 646
BfaI CTAG 4 cut(s) 192, 479, 884, 1184
BfrI CTTAAG 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 1049
BglII AGATCT 1 cut(s) 970
BisI GCNGC 8 cut(s) 11, 21, 24, 50, 104, 189, 521, 720
BlsI GCNGC 8 cut(s) 12, 22, 25, 51, 105, 190, 522, 721
Bme1390I CCNGG 4 cut(s) 108, 319, 812, 948
BmeT110I CYCGRG 2 cut(s) 14, 597
BmgT120I GGNCC 6 cut(s) 92, 275, 276, 847, 848, 887
BmiI GGNNCC 5 cut(s) 277, 699, 848, 849, 889
BmrFI CCNGG 4 cut(s) 108, 319, 812, 948
BmsI GCATC 2 cut(s) 55, 1263
BpiI GAAGAC 1 cut(s) 1241
BplI GAGNNNNNCTC 2 cut(s) 580, 612
BpmI CTGGAG 2 cut(s) 324, 813
Bpu14I TTCGAA 2 cut(s) 73, 1135
BpuEI CTTGAG 1 cut(s) 487
BsaJI CCNNGG 6 cut(s) 317, 529, 758, 811, 946, 1228
Bsc4I CCNNNNNNNGG 6 cut(s) 158, 289, 375, 376, 451, 599
Bse118I RCCGGY 1 cut(s) 184
Bse1I ACTGG 3 cut(s) 341, 830, 1243
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 4 cut(s) 108, 319, 812, 948
BseDI CCNNGG 6 cut(s) 317, 529, 758, 811, 946, 1228
BseGI GGATG 1 cut(s) 788
BseLI CCNNNNNNNGG 6 cut(s) 158, 289, 375, 376, 451, 599
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 1272
BseNI ACTGG 3 cut(s) 341, 830, 1243
BseRI GAGGAG 1 cut(s) 944
BseSI GKGCMC 2 cut(s) 279, 851
BseXI GCAGC 4 cut(s) 61, 90, 532, 706
BsgI GTGCAG 2 cut(s) 705, 1083
BshFI GGCC 8 cut(s) 20, 93, 277, 500, 528, 592, 849, 888
BsiHKCI CYCGRG 2 cut(s) 14, 597
BsiSI CCGG 2 cut(s) 98, 185
BslFI GGGAC 2 cut(s) 894, 1148
BslI CCNNNNNNNGG 6 cut(s) 158, 289, 375, 376, 451, 599
BsmFI GGGAC 2 cut(s) 894, 1148
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 8 cut(s) 20, 93, 277, 500, 528, 592, 849, 888
BsoBI CYCGRG 2 cut(s) 14, 597
Bsp119I TTCGAA 2 cut(s) 73, 1135
Bsp120I GGGCCC 2 cut(s) 275, 847
Bsp1286I GDGCHC 3 cut(s) 279, 417, 851
Bsp143I GATC 5 cut(s) 646, 682, 735, 970, 1006
Bsp19I CCATGG 2 cut(s) 529, 758
BspANI GGCC 8 cut(s) 20, 93, 277, 500, 528, 592, 849, 888
BspCNI CTCAG 1 cut(s) 1271
BspLI GGNNCC 5 cut(s) 277, 699, 848, 849, 889
BspMI ACCTGC 1 cut(s) 1049
BspPI GGATC 1 cut(s) 743
BspT104I TTCGAA 2 cut(s) 73, 1135
BspTI CTTAAG 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 1 cut(s) 184
BsrI ACTGG 3 cut(s) 341, 830, 1243
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 6 cut(s) 317, 529, 758, 811, 946, 1228
BssMI GATC 5 cut(s) 646, 682, 735, 970, 1006
BssSI CACGAG 2 cut(s) 351, 658
BssT1I CCWWGG 2 cut(s) 529, 758
Bst2BI CACGAG 2 cut(s) 351, 658
Bst2UI CCWGG 4 cut(s) 108, 319, 812, 948
Bst4CI ACNGT 3 cut(s) 841, 859, 1229
Bst6I CTCTTC 2 cut(s) 394, 946
BstAFI CTTAAG 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 10
BstBI TTCGAA 2 cut(s) 73, 1135
BstC8I GCNNGC 2 cut(s) 95, 186
BstDEI CTNAG 2 cut(s) 144, 1258
BstDSI CCRYGG 3 cut(s) 529, 758, 1228
BstF5I GGATG 1 cut(s) 788
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 5 cut(s) 649, 685, 738, 973, 1009
BstMBI GATC 5 cut(s) 646, 682, 735, 970, 1006
BstMWI GCNNNNNNNGC 7 cut(s) 10, 29, 49, 103, 983, 1188, 1219
BstNI CCWGG 4 cut(s) 108, 319, 812, 948
BstNSI RCATGY 1 cut(s) 911
BstSCI CCNGG 4 cut(s) 106, 317, 810, 946
BstSLI GKGCMC 2 cut(s) 279, 851
BstV1I GCAGC 4 cut(s) 61, 90, 532, 706
BstV2I GAAGAC 1 cut(s) 1241
BstX2I RGATCY 2 cut(s) 735, 970
BstXI CCANNNNNNTGG 1 cut(s) 1020
BstYI RGATCY 2 cut(s) 735, 970
BsuRI GGCC 8 cut(s) 20, 93, 277, 500, 528, 592, 849, 888
BtgI CCRYGG 3 cut(s) 529, 758, 1228
BtsCI GGATG 1 cut(s) 788
BtsIMutI CAGTG 4 cut(s) 348, 837, 864, 891
BveI ACCTGC 1 cut(s) 1049
Cac8I GCNNGC 2 cut(s) 95, 186
CfoI GCGC 1 cut(s) 405
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 6 cut(s) 92, 275, 276, 847, 848, 887
CseI GACGC 1 cut(s) 659
DdeI CTNAG 2 cut(s) 144, 1258
DpnI GATC 5 cut(s) 648, 684, 737, 972, 1008
DpnII GATC 5 cut(s) 646, 682, 735, 970, 1006
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 2 cut(s) 394, 946
EarI CTCTTC 2 cut(s) 394, 946
EciI GGCGGA 2 cut(s) 981, 1169
Eco130I CCWWGG 2 cut(s) 529, 758
Eco24I GRGCYC 3 cut(s) 279, 417, 851
Eco57I CTGAAG 5 cut(s) 29, 228, 1109, 1229, 1234
Eco88I CYCGRG 2 cut(s) 14, 597
EcoO109I RGGNCCY 3 cut(s) 847, 848, 887
EcoRI GAATTC 3 cut(s) 383, 934, 1094
EcoRII CCWGG 4 cut(s) 106, 317, 810, 946
EcoT14I CCWWGG 2 cut(s) 529, 758
EcoT38I GRGCYC 3 cut(s) 279, 417, 851
ErhI CCWWGG 2 cut(s) 529, 758
FalI AAGNNNNNCTT 4 cut(s) 201, 233, 1226, 1258
FaqI GGGAC 2 cut(s) 894, 1148
FauI CCCGC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 271
FbaI TGATCA 1 cut(s) 646
Fnu4HI GCNGC 8 cut(s) 11, 21, 24, 50, 104, 189, 521, 720
FokI GGATG 1 cut(s) 775
FriOI GRGCYC 3 cut(s) 279, 417, 851
Fsp4HI GCNGC 8 cut(s) 11, 21, 24, 50, 104, 189, 521, 720
FspBI CTAG 4 cut(s) 192, 479, 884, 1184
GlaI GCGC 1 cut(s) 404
GluI GCNGC 8 cut(s) 11, 21, 24, 50, 104, 189, 521, 720
GsuI CTGGAG 2 cut(s) 324, 813
HaeIII GGCC 8 cut(s) 20, 93, 277, 500, 528, 592, 849, 888
HapII CCGG 2 cut(s) 98, 185
HgaI GACGC 1 cut(s) 659
HhaI GCGC 1 cut(s) 405
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 9 cut(s) 75, 86, 148, 622, 771, 867, 941, 956, 1069
HpaII CCGG 2 cut(s) 98, 185
HphI GGTGA 2 cut(s) 573, 830
Hpy188I TCNGA 6 cut(s) 153, 239, 292, 914, 940, 1100
Hpy188III TCNNGA 4 cut(s) 674, 775, 797, 871
Hpy99I CGWCG 2 cut(s) 140, 292
HpyAV CCTTC 5 cut(s) 203, 510, 803, 897, 1133
HpyCH4III ACNGT 3 cut(s) 841, 859, 1229
HpyCH4IV ACGT 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 29, 49, 103, 983, 1188, 1219
HpyF3I CTNAG 2 cut(s) 144, 1258
HpySE526I ACGT 1 cut(s) 287
HspAI GCGC 1 cut(s) 403
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 5 cut(s) 646, 682, 735, 970, 1006
LmnI GCTCC 3 cut(s) 100, 1148, 1267
Lsp1109I GCAGC 4 cut(s) 61, 90, 532, 706
LweI GCATC 2 cut(s) 55, 1263
MaeI CTAG 4 cut(s) 192, 479, 884, 1184
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 3 cut(s) 334, 343, 602
MalI GATC 5 cut(s) 648, 684, 737, 972, 1008
MbiI CCGCTC 1 cut(s) 802
MboI GATC 5 cut(s) 646, 682, 735, 970, 1006
MboII GAAGA 8 cut(s) 381, 534, 677, 799, 963, 1001, 1168, 1246
MfeI CAATTG 2 cut(s) 27, 494
MflI RGATCY 2 cut(s) 735, 970
MhlI GDGCHC 3 cut(s) 279, 417, 851
MlyI GAGTC 2 cut(s) 157, 631
MmeI TCCRAC 2 cut(s) 270, 892
MnlI CCTC 8 cut(s) 10, 124, 511, 582, 593, 654, 796, 922
MroNI GCCGGC 1 cut(s) 184
MroXI GAANNNNTTC 3 cut(s) 955, 1094, 1105
MseI TTAA 5 cut(s) 219, 296, 561, 726, 1025
MslI CAYNNNNRTG 2 cut(s) 630, 1227
MspCI CTTAAG 1 cut(s) 218
MspI CCGG 2 cut(s) 98, 185
MspR9I CCNGG 4 cut(s) 108, 319, 812, 948
MunI CAATTG 2 cut(s) 27, 494
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 4 cut(s) 108, 319, 812, 948
MwoI GCNNNNNNNGC 7 cut(s) 10, 29, 49, 103, 983, 1188, 1219
NaeI GCCGGC 1 cut(s) 186
NcoI CCATGG 2 cut(s) 529, 758
NdeI CATATG 1 cut(s) 271
NdeII GATC 5 cut(s) 646, 682, 735, 970, 1006
NgoMIV GCCGGC 1 cut(s) 184
NlaIV GGNNCC 5 cut(s) 277, 699, 848, 849, 889
NmeAIII GCCGAG 1 cut(s) 504
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 1 cut(s) 911
NspV TTCGAA 2 cut(s) 73, 1135
PaeR7I CTCGAG 2 cut(s) 14, 597
PaqCI CACCTGC 1 cut(s) 1049
PctI GAATGC 1 cut(s) 356
PdiI GCCGGC 1 cut(s) 186
PdmI GAANNNNTTC 3 cut(s) 955, 1094, 1105
PfeI GAWTC 7 cut(s) 75, 86, 771, 867, 941, 956, 1069
PflMI CCANNNNNTGG 1 cut(s) 451
PkrI GCNGC 8 cut(s) 12, 22, 25, 51, 105, 190, 522, 721
PleI GAGTC 2 cut(s) 156, 630
PpsI GAGTC 2 cut(s) 156, 630
PsiI TTATAA 1 cut(s) 396
Psp6I CCWGG 4 cut(s) 106, 317, 810, 946
PspGI CCWGG 4 cut(s) 106, 317, 810, 946
PspN4I GGNNCC 5 cut(s) 277, 699, 848, 849, 889
PspOMI GGGCCC 2 cut(s) 275, 847
PspPI GGNCC 6 cut(s) 92, 275, 276, 847, 848, 887
PspXI VCTCGAGB 2 cut(s) 14, 597
PsuI RGATCY 2 cut(s) 735, 970
RseI CAYNNNNRTG 2 cut(s) 630, 1227
SaqAI TTAA 5 cut(s) 219, 296, 561, 726, 1025
SatI GCNGC 8 cut(s) 11, 21, 24, 50, 104, 189, 521, 720
Sau3AI GATC 5 cut(s) 646, 682, 735, 970, 1006
Sau96I GGNCC 6 cut(s) 92, 275, 276, 847, 848, 887
SchI GAGTC 2 cut(s) 157, 631
ScrFI CCNGG 4 cut(s) 108, 319, 812, 948
SduI GDGCHC 3 cut(s) 279, 417, 851
SfaNI GCATC 2 cut(s) 55, 1263
Sfr274I CTCGAG 2 cut(s) 14, 597
SfuI TTCGAA 2 cut(s) 73, 1135
SlaI CTCGAG 2 cut(s) 14, 597
SmiMI CAYNNNNRTG 2 cut(s) 630, 1227
SmlI CTYRAG 4 cut(s) 14, 218, 502, 597
SmoI CTYRAG 4 cut(s) 14, 218, 502, 597
SspI AATATT 1 cut(s) 60
SspMI CTAG 4 cut(s) 192, 479, 884, 1184
StyD4I CCNGG 4 cut(s) 106, 317, 810, 946
StyI CCWWGG 2 cut(s) 529, 758
TaaI ACNGT 3 cut(s) 841, 859, 1229
TaiI ACGT 1 cut(s) 290
TaqI TCGA 9 cut(s) 15, 63, 73, 84, 138, 598, 652, 681, 1135
TauI GCSGC 3 cut(s) 23, 26, 191
TfiI GAWTC 7 cut(s) 75, 86, 771, 867, 941, 956, 1069
Tru1I TTAA 5 cut(s) 219, 296, 561, 726, 1025
Tru9I TTAA 5 cut(s) 219, 296, 561, 726, 1025
TscAI CASTG 4 cut(s) 348, 844, 864, 898
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 5 cut(s) 10, 49, 103, 520, 719
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 423, 990
TspGWI ACGGA 1 cut(s) 1254
TspRI CASTG 4 cut(s) 348, 844, 864, 898
Van91I CCANNNNNTGG 1 cut(s) 451
Vha464I CTTAAG 1 cut(s) 218
XapI RAATTY 5 cut(s) 383, 577, 934, 1094, 1172
XceI RCATGY 1 cut(s) 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XhoI CTCGAG 2 cut(s) 14, 597
XmnI GAANNNNTTC 3 cut(s) 955, 1094, 1105
XspI CTAG 4 cut(s) 192, 479, 884, 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.