Sorting and assembly machinery
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G11070 AT5G05520 |
| fragaria_vesca | FvH4_7g24890 FvH4_7g24890 |
| malus_domestica | MD01G1156600.v1.1 MD07G1225300.v1.1 |
| prunus_persica | Prupe.2G254100_v2.0.a1 Prupe.2G254100_v2.0.a1 |
| pyrus_communis | pycom07g20400 |
| rosa_chinensis | RchiOBHm_Chr1g0370771 |
| rosa_laevigata | RLG00000027011 |
| rosa_multiflora | Rmu_sc0009474.1_g000003 Rmu_sc0009615.1_g000003 Rmu_sc0029761.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00286250 |
| rosa_rugosa | Rorug01G0359500 Rorug01G0359600 |
| rosa_samantha | Rh1AG368700 Rh1BG332300 Rh1CG346200 Rh1DG363700 |
| rosa_wichuraiana | Rw1G032460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 396 |
| AarI | CACCTGC | 1 cut(s) | 1049 |
| Acc36I | ACCTGC | 1 cut(s) | 1049 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 451 |
| AccBSI | CCGCTC | 1 cut(s) | 802 |
| AclWI | GGATC | 1 cut(s) | 743 |
| AcoI | YGGCCR | 1 cut(s) | 526 |
| AcsI | RAATTY | 5 cut(s) | 383, 577, 934, 1094, 1172 |
| AcuI | CTGAAG | 5 cut(s) | 29, 228, 1109, 1229, 1234 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 158, 289, 375, 376, 451, 599 |
| AflII | CTTAAG | 1 cut(s) | 218 |
| AgsI | TTSAA | 7 cut(s) | 56, 226, 325, 546, 618, 778, 871 |
| AjnI | CCWGG | 4 cut(s) | 106, 317, 810, 946 |
| AluBI | AGCT | 6 cut(s) | 10, 43, 52, 103, 523, 1262 |
| AluI | AGCT | 6 cut(s) | 10, 43, 52, 103, 523, 1262 |
| AlwI | GGATC | 1 cut(s) | 743 |
| Ama87I | CYCGRG | 2 cut(s) | 14, 597 |
| AoxI | GGCC | 8 cut(s) | 18, 91, 275, 498, 526, 590, 847, 886 |
| ApaI | GGGCCC | 2 cut(s) | 279, 851 |
| ApeKI | GCWGC | 5 cut(s) | 10, 49, 103, 520, 719 |
| ApoI | RAATTY | 5 cut(s) | 383, 577, 934, 1094, 1172 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 986, 1018 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 955, 1094, 1105 |
| AspLEI | GCGC | 1 cut(s) | 405 |
| AspS9I | GGNCC | 6 cut(s) | 92, 275, 276, 847, 848, 887 |
| AsuHPI | GGTGA | 2 cut(s) | 573, 830 |
| AsuII | TTCGAA | 2 cut(s) | 73, 1135 |
| AvaI | CYCGRG | 2 cut(s) | 14, 597 |
| BaeGI | GKGCMC | 2 cut(s) | 279, 851 |
| BanII | GRGCYC | 3 cut(s) | 279, 417, 851 |
| BauI | CACGAG | 2 cut(s) | 351, 658 |
| BbsI | GAAGAC | 1 cut(s) | 1241 |
| BbvI | GCAGC | 4 cut(s) | 61, 90, 532, 706 |
| BccI | CCATC | 2 cut(s) | 403, 496 |
| BceAI | ACGGC | 1 cut(s) | 363 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 152, 186, 649, 683 |
| BciT130I | CCWGG | 4 cut(s) | 108, 319, 812, 948 |
| BclI | TGATCA | 1 cut(s) | 646 |
| BfaI | CTAG | 4 cut(s) | 192, 479, 884, 1184 |
| BfrI | CTTAAG | 1 cut(s) | 218 |
| BfuAI | ACCTGC | 1 cut(s) | 1049 |
| BglII | AGATCT | 1 cut(s) | 970 |
| BisI | GCNGC | 8 cut(s) | 11, 21, 24, 50, 104, 189, 521, 720 |
| BlsI | GCNGC | 8 cut(s) | 12, 22, 25, 51, 105, 190, 522, 721 |
| Bme1390I | CCNGG | 4 cut(s) | 108, 319, 812, 948 |
| BmeT110I | CYCGRG | 2 cut(s) | 14, 597 |
| BmgT120I | GGNCC | 6 cut(s) | 92, 275, 276, 847, 848, 887 |
| BmiI | GGNNCC | 5 cut(s) | 277, 699, 848, 849, 889 |
| BmrFI | CCNGG | 4 cut(s) | 108, 319, 812, 948 |
| BmsI | GCATC | 2 cut(s) | 55, 1263 |
| BpiI | GAAGAC | 1 cut(s) | 1241 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 580, 612 |
| BpmI | CTGGAG | 2 cut(s) | 324, 813 |
| Bpu14I | TTCGAA | 2 cut(s) | 73, 1135 |
| BpuEI | CTTGAG | 1 cut(s) | 487 |
| BsaJI | CCNNGG | 6 cut(s) | 317, 529, 758, 811, 946, 1228 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 158, 289, 375, 376, 451, 599 |
| Bse118I | RCCGGY | 1 cut(s) | 184 |
| Bse1I | ACTGG | 3 cut(s) | 341, 830, 1243 |
| Bse3DI | GCAATG | 1 cut(s) | 636 |
| BseBI | CCWGG | 4 cut(s) | 108, 319, 812, 948 |
| BseDI | CCNNGG | 6 cut(s) | 317, 529, 758, 811, 946, 1228 |
| BseGI | GGATG | 1 cut(s) | 788 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 158, 289, 375, 376, 451, 599 |
| BseMI | GCAATG | 1 cut(s) | 636 |
| BseMII | CTCAG | 1 cut(s) | 1272 |
| BseNI | ACTGG | 3 cut(s) | 341, 830, 1243 |
| BseRI | GAGGAG | 1 cut(s) | 944 |
| BseSI | GKGCMC | 2 cut(s) | 279, 851 |
| BseXI | GCAGC | 4 cut(s) | 61, 90, 532, 706 |
| BsgI | GTGCAG | 2 cut(s) | 705, 1083 |
| BshFI | GGCC | 8 cut(s) | 20, 93, 277, 500, 528, 592, 849, 888 |
| BsiHKCI | CYCGRG | 2 cut(s) | 14, 597 |
| BsiSI | CCGG | 2 cut(s) | 98, 185 |
| BslFI | GGGAC | 2 cut(s) | 894, 1148 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 158, 289, 375, 376, 451, 599 |
| BsmFI | GGGAC | 2 cut(s) | 894, 1148 |
| BsmI | GAATGC | 1 cut(s) | 356 |
| BsnI | GGCC | 8 cut(s) | 20, 93, 277, 500, 528, 592, 849, 888 |
| BsoBI | CYCGRG | 2 cut(s) | 14, 597 |
| Bsp119I | TTCGAA | 2 cut(s) | 73, 1135 |
| Bsp120I | GGGCCC | 2 cut(s) | 275, 847 |
| Bsp1286I | GDGCHC | 3 cut(s) | 279, 417, 851 |
| Bsp143I | GATC | 5 cut(s) | 646, 682, 735, 970, 1006 |
| Bsp19I | CCATGG | 2 cut(s) | 529, 758 |
| BspANI | GGCC | 8 cut(s) | 20, 93, 277, 500, 528, 592, 849, 888 |
| BspCNI | CTCAG | 1 cut(s) | 1271 |
| BspLI | GGNNCC | 5 cut(s) | 277, 699, 848, 849, 889 |
| BspMI | ACCTGC | 1 cut(s) | 1049 |
| BspPI | GGATC | 1 cut(s) | 743 |
| BspT104I | TTCGAA | 2 cut(s) | 73, 1135 |
| BspTI | CTTAAG | 1 cut(s) | 218 |
| BsrBI | CCGCTC | 1 cut(s) | 802 |
| BsrDI | GCAATG | 1 cut(s) | 636 |
| BsrFI | RCCGGY | 1 cut(s) | 184 |
| BsrI | ACTGG | 3 cut(s) | 341, 830, 1243 |
| BssAI | RCCGGY | 1 cut(s) | 184 |
| BssECI | CCNNGG | 6 cut(s) | 317, 529, 758, 811, 946, 1228 |
| BssMI | GATC | 5 cut(s) | 646, 682, 735, 970, 1006 |
| BssSI | CACGAG | 2 cut(s) | 351, 658 |
| BssT1I | CCWWGG | 2 cut(s) | 529, 758 |
| Bst2BI | CACGAG | 2 cut(s) | 351, 658 |
| Bst2UI | CCWGG | 4 cut(s) | 108, 319, 812, 948 |
| Bst4CI | ACNGT | 3 cut(s) | 841, 859, 1229 |
| Bst6I | CTCTTC | 2 cut(s) | 394, 946 |
| BstAFI | CTTAAG | 1 cut(s) | 218 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 10 |
| BstBI | TTCGAA | 2 cut(s) | 73, 1135 |
| BstC8I | GCNNGC | 2 cut(s) | 95, 186 |
| BstDEI | CTNAG | 2 cut(s) | 144, 1258 |
| BstDSI | CCRYGG | 3 cut(s) | 529, 758, 1228 |
| BstF5I | GGATG | 1 cut(s) | 788 |
| BstHHI | GCGC | 1 cut(s) | 405 |
| BstKTI | GATC | 5 cut(s) | 649, 685, 738, 973, 1009 |
| BstMBI | GATC | 5 cut(s) | 646, 682, 735, 970, 1006 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 10, 29, 49, 103, 983, 1188, 1219 |
| BstNI | CCWGG | 4 cut(s) | 108, 319, 812, 948 |
| BstNSI | RCATGY | 1 cut(s) | 911 |
| BstSCI | CCNGG | 4 cut(s) | 106, 317, 810, 946 |
| BstSLI | GKGCMC | 2 cut(s) | 279, 851 |
| BstV1I | GCAGC | 4 cut(s) | 61, 90, 532, 706 |
| BstV2I | GAAGAC | 1 cut(s) | 1241 |
| BstX2I | RGATCY | 2 cut(s) | 735, 970 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1020 |
| BstYI | RGATCY | 2 cut(s) | 735, 970 |
| BsuRI | GGCC | 8 cut(s) | 20, 93, 277, 500, 528, 592, 849, 888 |
| BtgI | CCRYGG | 3 cut(s) | 529, 758, 1228 |
| BtsCI | GGATG | 1 cut(s) | 788 |
| BtsIMutI | CAGTG | 4 cut(s) | 348, 837, 864, 891 |
| BveI | ACCTGC | 1 cut(s) | 1049 |
| Cac8I | GCNNGC | 2 cut(s) | 95, 186 |
| CfoI | GCGC | 1 cut(s) | 405 |
| Cfr10I | RCCGGY | 1 cut(s) | 184 |
| Cfr13I | GGNCC | 6 cut(s) | 92, 275, 276, 847, 848, 887 |
| CseI | GACGC | 1 cut(s) | 659 |
| DdeI | CTNAG | 2 cut(s) | 144, 1258 |
| DpnI | GATC | 5 cut(s) | 648, 684, 737, 972, 1008 |
| DpnII | GATC | 5 cut(s) | 646, 682, 735, 970, 1006 |
| EaeI | YGGCCR | 1 cut(s) | 526 |
| Eam1104I | CTCTTC | 2 cut(s) | 394, 946 |
| EarI | CTCTTC | 2 cut(s) | 394, 946 |
| EciI | GGCGGA | 2 cut(s) | 981, 1169 |
| Eco130I | CCWWGG | 2 cut(s) | 529, 758 |
| Eco24I | GRGCYC | 3 cut(s) | 279, 417, 851 |
| Eco57I | CTGAAG | 5 cut(s) | 29, 228, 1109, 1229, 1234 |
| Eco88I | CYCGRG | 2 cut(s) | 14, 597 |
| EcoO109I | RGGNCCY | 3 cut(s) | 847, 848, 887 |
| EcoRI | GAATTC | 3 cut(s) | 383, 934, 1094 |
| EcoRII | CCWGG | 4 cut(s) | 106, 317, 810, 946 |
| EcoT14I | CCWWGG | 2 cut(s) | 529, 758 |
| EcoT38I | GRGCYC | 3 cut(s) | 279, 417, 851 |
| ErhI | CCWWGG | 2 cut(s) | 529, 758 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 201, 233, 1226, 1258 |
| FaqI | GGGAC | 2 cut(s) | 894, 1148 |
| FauI | CCCGC | 1 cut(s) | 102 |
| FauNDI | CATATG | 1 cut(s) | 271 |
| FbaI | TGATCA | 1 cut(s) | 646 |
| Fnu4HI | GCNGC | 8 cut(s) | 11, 21, 24, 50, 104, 189, 521, 720 |
| FokI | GGATG | 1 cut(s) | 775 |
| FriOI | GRGCYC | 3 cut(s) | 279, 417, 851 |
| Fsp4HI | GCNGC | 8 cut(s) | 11, 21, 24, 50, 104, 189, 521, 720 |
| FspBI | CTAG | 4 cut(s) | 192, 479, 884, 1184 |
| GlaI | GCGC | 1 cut(s) | 404 |
| GluI | GCNGC | 8 cut(s) | 11, 21, 24, 50, 104, 189, 521, 720 |
| GsuI | CTGGAG | 2 cut(s) | 324, 813 |
| HaeIII | GGCC | 8 cut(s) | 20, 93, 277, 500, 528, 592, 849, 888 |
| HapII | CCGG | 2 cut(s) | 98, 185 |
| HgaI | GACGC | 1 cut(s) | 659 |
| HhaI | GCGC | 1 cut(s) | 405 |
| Hin6I | GCGC | 1 cut(s) | 403 |
| HinP1I | GCGC | 1 cut(s) | 403 |
| HindIII | AAGCTT | 1 cut(s) | 41 |
| HinfI | GANTC | 9 cut(s) | 75, 86, 148, 622, 771, 867, 941, 956, 1069 |
| HpaII | CCGG | 2 cut(s) | 98, 185 |
| HphI | GGTGA | 2 cut(s) | 573, 830 |
| Hpy188I | TCNGA | 6 cut(s) | 153, 239, 292, 914, 940, 1100 |
| Hpy188III | TCNNGA | 4 cut(s) | 674, 775, 797, 871 |
| Hpy99I | CGWCG | 2 cut(s) | 140, 292 |
| HpyAV | CCTTC | 5 cut(s) | 203, 510, 803, 897, 1133 |
| HpyCH4III | ACNGT | 3 cut(s) | 841, 859, 1229 |
| HpyCH4IV | ACGT | 1 cut(s) | 287 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 10, 29, 49, 103, 983, 1188, 1219 |
| HpyF3I | CTNAG | 2 cut(s) | 144, 1258 |
| HpySE526I | ACGT | 1 cut(s) | 287 |
| HspAI | GCGC | 1 cut(s) | 403 |
| KroI | GCCGGC | 1 cut(s) | 184 |
| KroNI | GCCGGC | 1 cut(s) | 186 |
| Ksp22I | TGATCA | 1 cut(s) | 646 |
| Kzo9I | GATC | 5 cut(s) | 646, 682, 735, 970, 1006 |
| LmnI | GCTCC | 3 cut(s) | 100, 1148, 1267 |
| Lsp1109I | GCAGC | 4 cut(s) | 61, 90, 532, 706 |
| LweI | GCATC | 2 cut(s) | 55, 1263 |
| MaeI | CTAG | 4 cut(s) | 192, 479, 884, 1184 |
| MaeII | ACGT | 1 cut(s) | 287 |
| MaeIII | GTNAC | 3 cut(s) | 334, 343, 602 |
| MalI | GATC | 5 cut(s) | 648, 684, 737, 972, 1008 |
| MbiI | CCGCTC | 1 cut(s) | 802 |
| MboI | GATC | 5 cut(s) | 646, 682, 735, 970, 1006 |
| MboII | GAAGA | 8 cut(s) | 381, 534, 677, 799, 963, 1001, 1168, 1246 |
| MfeI | CAATTG | 2 cut(s) | 27, 494 |
| MflI | RGATCY | 2 cut(s) | 735, 970 |
| MhlI | GDGCHC | 3 cut(s) | 279, 417, 851 |
| MlyI | GAGTC | 2 cut(s) | 157, 631 |
| MmeI | TCCRAC | 2 cut(s) | 270, 892 |
| MnlI | CCTC | 8 cut(s) | 10, 124, 511, 582, 593, 654, 796, 922 |
| MroNI | GCCGGC | 1 cut(s) | 184 |
| MroXI | GAANNNNTTC | 3 cut(s) | 955, 1094, 1105 |
| MseI | TTAA | 5 cut(s) | 219, 296, 561, 726, 1025 |
| MslI | CAYNNNNRTG | 2 cut(s) | 630, 1227 |
| MspCI | CTTAAG | 1 cut(s) | 218 |
| MspI | CCGG | 2 cut(s) | 98, 185 |
| MspR9I | CCNGG | 4 cut(s) | 108, 319, 812, 948 |
| MunI | CAATTG | 2 cut(s) | 27, 494 |
| Mva1269I | GAATGC | 1 cut(s) | 356 |
| MvaI | CCWGG | 4 cut(s) | 108, 319, 812, 948 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 10, 29, 49, 103, 983, 1188, 1219 |
| NaeI | GCCGGC | 1 cut(s) | 186 |
| NcoI | CCATGG | 2 cut(s) | 529, 758 |
| NdeI | CATATG | 1 cut(s) | 271 |
| NdeII | GATC | 5 cut(s) | 646, 682, 735, 970, 1006 |
| NgoMIV | GCCGGC | 1 cut(s) | 184 |
| NlaIV | GGNNCC | 5 cut(s) | 277, 699, 848, 849, 889 |
| NmeAIII | GCCGAG | 1 cut(s) | 504 |
| NmuCI | GTSAC | 1 cut(s) | 343 |
| NspI | RCATGY | 1 cut(s) | 911 |
| NspV | TTCGAA | 2 cut(s) | 73, 1135 |
| PaeR7I | CTCGAG | 2 cut(s) | 14, 597 |
| PaqCI | CACCTGC | 1 cut(s) | 1049 |
| PctI | GAATGC | 1 cut(s) | 356 |
| PdiI | GCCGGC | 1 cut(s) | 186 |
| PdmI | GAANNNNTTC | 3 cut(s) | 955, 1094, 1105 |
| PfeI | GAWTC | 7 cut(s) | 75, 86, 771, 867, 941, 956, 1069 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 451 |
| PkrI | GCNGC | 8 cut(s) | 12, 22, 25, 51, 105, 190, 522, 721 |
| PleI | GAGTC | 2 cut(s) | 156, 630 |
| PpsI | GAGTC | 2 cut(s) | 156, 630 |
| PsiI | TTATAA | 1 cut(s) | 396 |
| Psp6I | CCWGG | 4 cut(s) | 106, 317, 810, 946 |
| PspGI | CCWGG | 4 cut(s) | 106, 317, 810, 946 |
| PspN4I | GGNNCC | 5 cut(s) | 277, 699, 848, 849, 889 |
| PspOMI | GGGCCC | 2 cut(s) | 275, 847 |
| PspPI | GGNCC | 6 cut(s) | 92, 275, 276, 847, 848, 887 |
| PspXI | VCTCGAGB | 2 cut(s) | 14, 597 |
| PsuI | RGATCY | 2 cut(s) | 735, 970 |
| RseI | CAYNNNNRTG | 2 cut(s) | 630, 1227 |
| SaqAI | TTAA | 5 cut(s) | 219, 296, 561, 726, 1025 |
| SatI | GCNGC | 8 cut(s) | 11, 21, 24, 50, 104, 189, 521, 720 |
| Sau3AI | GATC | 5 cut(s) | 646, 682, 735, 970, 1006 |
| Sau96I | GGNCC | 6 cut(s) | 92, 275, 276, 847, 848, 887 |
| SchI | GAGTC | 2 cut(s) | 157, 631 |
| ScrFI | CCNGG | 4 cut(s) | 108, 319, 812, 948 |
| SduI | GDGCHC | 3 cut(s) | 279, 417, 851 |
| SfaNI | GCATC | 2 cut(s) | 55, 1263 |
| Sfr274I | CTCGAG | 2 cut(s) | 14, 597 |
| SfuI | TTCGAA | 2 cut(s) | 73, 1135 |
| SlaI | CTCGAG | 2 cut(s) | 14, 597 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 630, 1227 |
| SmlI | CTYRAG | 4 cut(s) | 14, 218, 502, 597 |
| SmoI | CTYRAG | 4 cut(s) | 14, 218, 502, 597 |
| SspI | AATATT | 1 cut(s) | 60 |
| SspMI | CTAG | 4 cut(s) | 192, 479, 884, 1184 |
| StyD4I | CCNGG | 4 cut(s) | 106, 317, 810, 946 |
| StyI | CCWWGG | 2 cut(s) | 529, 758 |
| TaaI | ACNGT | 3 cut(s) | 841, 859, 1229 |
| TaiI | ACGT | 1 cut(s) | 290 |
| TaqI | TCGA | 9 cut(s) | 15, 63, 73, 84, 138, 598, 652, 681, 1135 |
| TauI | GCSGC | 3 cut(s) | 23, 26, 191 |
| TfiI | GAWTC | 7 cut(s) | 75, 86, 771, 867, 941, 956, 1069 |
| Tru1I | TTAA | 5 cut(s) | 219, 296, 561, 726, 1025 |
| Tru9I | TTAA | 5 cut(s) | 219, 296, 561, 726, 1025 |
| TscAI | CASTG | 4 cut(s) | 348, 844, 864, 898 |
| TseFI | GTSAC | 1 cut(s) | 343 |
| TseI | GCWGC | 5 cut(s) | 10, 49, 103, 520, 719 |
| Tsp45I | GTSAC | 1 cut(s) | 343 |
| TspDTI | ATGAA | 2 cut(s) | 423, 990 |
| TspGWI | ACGGA | 1 cut(s) | 1254 |
| TspRI | CASTG | 4 cut(s) | 348, 844, 864, 898 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 451 |
| Vha464I | CTTAAG | 1 cut(s) | 218 |
| XapI | RAATTY | 5 cut(s) | 383, 577, 934, 1094, 1172 |
| XceI | RCATGY | 1 cut(s) | 911 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 124 |
| XhoI | CTCGAG | 2 cut(s) | 14, 597 |
| XmnI | GAANNNNTTC | 3 cut(s) | 955, 1094, 1105 |
| XspI | CTAG | 4 cut(s) | 192, 479, 884, 1184 |