Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029761.1

Orthogroup ID

OG0009225

Physical Location & Seq

Genomic Coordinates Forward (+)

943 .. 1593

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggcggactctgaaaacctaaaccctaaagtcgaccccgaacaacaacccccctccaatctcaaccaaaacggacaccacgacgccgacccggaggaacccgatgacgacgaattcgaagaagaagaagaagaagaagacgacgacgacgacgacgaaccgccgcctccgctgcagcgaaagccgtcctcgggggagtcactgcgttcgtcgaaggccaagctggagggcctggtccgtcggatggagacggagaaagtcgatctgagggtgcacgatgttgtgatcagagggaacaccaagaccaaggagtatctgatcgaggccgagctcgaggggattaggaaggccacgactatgcaggagcttctcgaggcctcggctaaggccaatgccaagcttaaagagctcgatatcttcgattccgttcggatcacgcttgattccggcccgccggagctgccgcgaaccgccaacgtcctcgtcgacgtcgtcgagactgagagtgtgattactggtgaactcggttgttacactaagccggcggtatggtctctgttgctctctctatatatgtactggttttgctgtgctgaaattgatgagattaggagttgtatttcagatgagaaattacaagtatctgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008150 GO:0009987 GO:0016043 GO:0042407 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag POTRA

Protein Analysis

216

Amino Acids

24.33

Weight (kDa)

4.29

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11070 AT5G05520
fragaria_vesca	FvH4_7g24890 FvH4_7g24890
malus_domestica	MD01G1156600.v1.1 MD07G1225300.v1.1
prunus_persica	Prupe.2G254100_v2.0.a1 Prupe.2G254100_v2.0.a1
pyrus_communis	pycom07g20400
rosa_chinensis	RchiOBHm_Chr1g0370771
rosa_laevigata	RLG00000027011
rosa_multiflora	Rmu_sc0009474.1_g000003 Rmu_sc0009615.1_g000003 Rmu_sc0029761.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286250
rosa_rugosa	Rorug01G0359500 Rorug01G0359600
rosa_samantha	Rh1AG368700 Rh1BG332300 Rh1CG346200 Rh1DG363700
rosa_wichuraiana	Rw1G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	492
AccI	GTMKAC	2 cut(s)	33, 486
AccII	CGCG	1 cut(s)	466
AciI	CCGC	8 cut(s)	5, 161, 164, 170, 452, 464, 471, 545
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	2 cut(s)	84, 489
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	2 cut(s)	191, 244
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	6 cut(s)	223, 331, 367, 400, 409, 460
AluI	AGCT	6 cut(s)	223, 331, 367, 400, 409, 460
Alw21I	GWGCWC	3 cut(s)	276, 333, 411
Alw26I	GTCTC	3 cut(s)	242, 491, 558
Alw44I	GTGCAC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	440
Ama87I	CYCGRG	3 cut(s)	190, 332, 371
AoxI	GGCC	7 cut(s)	216, 229, 324, 348, 375, 387, 448
ApaLI	GTGCAC	1 cut(s)	272
ApeKI	GCWGC	3 cut(s)	172, 175, 460
ApoI	RAATTY	1 cut(s)	113
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspS9I	GGNCC	3 cut(s)	229, 235, 449
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	530
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	3 cut(s)	190, 332, 371
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	276
BanII	GRGCYC	2 cut(s)	333, 411
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	3 cut(s)	276, 333, 411
BbvI	GCAGC	3 cut(s)	159, 187, 447
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	3 cut(s)	242, 491, 558
BfmI	CTRYAG	1 cut(s)	173
BisI	GCNGC	5 cut(s)	164, 173, 176, 461, 464
BlsI	GCNGC	5 cut(s)	165, 174, 177, 462, 465
Bme1390I	CCNGG	2 cut(s)	92, 233
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	3 cut(s)	190, 332, 371
BmgT120I	GGNCC	3 cut(s)	229, 235, 449
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	92, 233
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	92
BsaHI	GRCGYC	2 cut(s)	84, 489
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	189, 306, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 244
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	2 cut(s)	520, 584
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	3 cut(s)	189, 306, 378
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	191, 244
BseMII	CTCAG	2 cut(s)	257, 492
BseNI	ACTGG	2 cut(s)	520, 584
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	159, 187, 447
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	7 cut(s)	218, 231, 326, 350, 377, 389, 450
BsiHKAI	GWGCWC	3 cut(s)	276, 333, 411
BsiHKCI	CYCGRG	3 cut(s)	190, 332, 371
BsiSI	CCGG	4 cut(s)	92, 447, 455, 542
BslI	CCNNNNNNNGG	2 cut(s)	191, 244
BsmAI	GTCTC	3 cut(s)	242, 491, 558
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	7 cut(s)	218, 231, 326, 350, 377, 389, 450
Bso31I	GGTCTC	1 cut(s)	558
BsoBI	CYCGRG	3 cut(s)	190, 332, 371
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	3 cut(s)	276, 333, 411
Bsp143I	GATC	4 cut(s)	262, 285, 318, 432
BspACI	CCGC	8 cut(s)	5, 161, 164, 170, 452, 464, 471, 545
BspANI	GGCC	7 cut(s)	218, 231, 326, 350, 377, 389, 450
BspCNI	CTCAG	2 cut(s)	258, 493
BspFNI	CGCG	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	99
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	440
BspT104I	TTCGAA	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	520, 584
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	3 cut(s)	189, 306, 378
BssMI	GATC	4 cut(s)	262, 285, 318, 432
BssNI	GRCGYC	2 cut(s)	84, 489
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	233
BstACI	GRCGYC	2 cut(s)	84, 489
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	452, 543
BstDEI	CTNAG	4 cut(s)	266, 384, 501, 537
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	1 cut(s)	466
BstKTI	GATC	4 cut(s)	265, 288, 321, 435
BstMAI	GTCTC	3 cut(s)	242, 491, 558
BstMBI	GATC	4 cut(s)	262, 285, 318, 432
BstMWI	GCNNNNNNNGC	5 cut(s)	169, 172, 181, 406, 460
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	90, 231
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	3 cut(s)	159, 187, 447
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	7 cut(s)	218, 231, 326, 350, 377, 389, 450
BtsCI	GGATG	1 cut(s)	249
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	452, 543
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	3 cut(s)	229, 235, 449
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	577
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	4 cut(s)	266, 384, 501, 537
DpnI	GATC	4 cut(s)	264, 287, 320, 434
DpnII	GATC	4 cut(s)	262, 285, 318, 432
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	331, 409
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	377
Eco24I	GRGCYC	2 cut(s)	333, 411
Eco31I	GGTCTC	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	331, 409
Eco88I	CYCGRG	3 cut(s)	190, 332, 371
EcoICRI	GAGCTC	2 cut(s)	331, 409
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	231
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	333, 411
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	242
FaiI	YATR	5 cut(s)	359, 550, 571, 573, 575
FauI	CCCGC	1 cut(s)	459
FbaI	TGATCA	1 cut(s)	285
FblI	GTMKAC	2 cut(s)	33, 486
Fnu4HI	GCNGC	5 cut(s)	164, 173, 176, 461, 464
FokI	GGATG	1 cut(s)	256
FriOI	GRGCYC	2 cut(s)	333, 411
Fsp4HI	GCNGC	5 cut(s)	164, 173, 176, 461, 464
GluI	GCNGC	5 cut(s)	164, 173, 176, 461, 464
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	7 cut(s)	218, 231, 326, 350, 377, 389, 450
HapII	CCGG	4 cut(s)	92, 447, 455, 542
HgaI	GACGC	1 cut(s)	92
Hin1I	GRCGYC	2 cut(s)	84, 489
HincII	GTYRAC	2 cut(s)	34, 487
HindII	GTYRAC	2 cut(s)	34, 487
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	4 cut(s)	8, 197, 422, 443
HpaII	CCGG	4 cut(s)	92, 447, 455, 542
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	4 cut(s)	34, 274, 487, 521
Hpy188I	TCNGA	7 cut(s)	13, 243, 267, 290, 318, 432, 625
Hpy188III	TCNNGA	2 cut(s)	371, 496
Hpy8I	GTNNAC	4 cut(s)	34, 274, 487, 521
HpyAV	CCTTC	2 cut(s)	208, 340
HpyCH4IV	ACGT	2 cut(s)	477, 489
HpyCH4V	TGCA	3 cut(s)	175, 274, 361
HpyF10VI	GCNNNNNNNGC	5 cut(s)	169, 172, 181, 406, 460
HpyF3I	CTNAG	4 cut(s)	266, 384, 501, 537
HpySE526I	ACGT	2 cut(s)	477, 489
Hsp92I	GRCGYC	2 cut(s)	84, 489
KroI	GCCGGC	1 cut(s)	541
KroNI	GCCGGC	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	262, 285, 318, 432
LmnI	GCTCC	2 cut(s)	364, 457
Lsp1109I	GCAGC	3 cut(s)	159, 187, 447
MaeII	ACGT	2 cut(s)	477, 489
MaeIII	GTNAC	2 cut(s)	198, 530
MalI	GATC	4 cut(s)	264, 287, 320, 434
MboI	GATC	4 cut(s)	262, 285, 318, 432
MboII	GAAGA	8 cut(s)	131, 134, 137, 140, 143, 146, 149, 409
MhlI	GDGCHC	3 cut(s)	276, 333, 411
MluCI	AATT	3 cut(s)	113, 597, 632
MlyI	GAGTC	2 cut(s)	2, 206
MmeI	TCCRAC	1 cut(s)	221
MroNI	GCCGGC	1 cut(s)	541
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	4 cut(s)	92, 447, 455, 542
MspR9I	CCNGG	2 cut(s)	92, 233
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	5 cut(s)	169, 172, 181, 406, 460
NaeI	GCCGGC	1 cut(s)	543
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	4 cut(s)	262, 285, 318, 432
NgoMIV	GCCGGC	1 cut(s)	541
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	2 cut(s)	352, 359
NmuCI	GTSAC	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	117
PaeR7I	CTCGAG	2 cut(s)	332, 371
PceI	AGGCCT	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	9 cut(s)	78, 114, 147, 150, 153, 417, 483, 489, 492
PdiI	GCCGGC	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	422, 443
PflFI	GACNNNGTC	1 cut(s)	491
PkrI	GCNGC	5 cut(s)	165, 174, 177, 462, 465
PleI	GAGTC	2 cut(s)	2, 205
PpsI	GAGTC	2 cut(s)	2, 205
Psp124BI	GAGCTC	2 cut(s)	333, 411
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	3 cut(s)	229, 235, 449
PspXI	VCTCGAGB	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	177
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	2 cut(s)	333, 411
SalI	GTCGAC	2 cut(s)	32, 485
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	5 cut(s)	164, 173, 176, 461, 464
Sau3AI	GATC	4 cut(s)	262, 285, 318, 432
Sau96I	GGNCC	3 cut(s)	229, 235, 449
SchI	GAGTC	2 cut(s)	2, 206
ScrFI	CCNGG	2 cut(s)	92, 233
SduI	GDGCHC	3 cut(s)	276, 333, 411
SetI	ASST	9 cut(s)	21, 225, 333, 369, 402, 411, 462, 480, 492
SfcI	CTRYAG	1 cut(s)	173
Sfr274I	CTCGAG	2 cut(s)	332, 371
SfuI	TTCGAA	1 cut(s)	117
SgrDI	CGTCGACG	1 cut(s)	485
SinI	GGWCC	1 cut(s)	235
SlaI	CTCGAG	2 cut(s)	332, 371
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	332, 371
SmoI	CTYRAG	2 cut(s)	332, 371
Sse9I	AATT	3 cut(s)	113, 597, 632
SseBI	AGGCCT	1 cut(s)	377
SsiI	CCGC	8 cut(s)	5, 161, 164, 170, 452, 464, 471, 545
SstI	GAGCTC	2 cut(s)	333, 411
StuI	AGGCCT	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	90, 231
StyI	CCWWGG	1 cut(s)	306
TaiI	ACGT	2 cut(s)	480, 492
TasI	AATT	3 cut(s)	113, 597, 632
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	2 cut(s)	166, 466
TfiI	GAWTC	2 cut(s)	422, 443
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	3 cut(s)	172, 175, 460
Tsp45I	GTSAC	1 cut(s)	198
TspGWI	ACGGA	4 cut(s)	87, 227, 266, 415
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	491
VneI	GTGCAC	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	113
XhoI	CTCGAG	2 cut(s)	332, 371
XmiI	GTMKAC	2 cut(s)	33, 486
ZraI	GACGTC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.