Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009225

Physical Location & Seq

Genomic Coordinates Forward (+)

7341461 .. 7346762

Gene Structure 5302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGCGACGGGGAGTGGAGAGGAGAAAGAGAGAGAGCTCGGGCGGTCGAGGTGCTAAGGATGGGGCATTGACCGATATGACGTCGGTGGAAGGGCGGACATCGTTGAGCTCCGAGAGTGTGGGAACTCCCGACTTGGTGGAGAAAGGCATAACGGGGATGGATGTTGTATTTACGAAGAACCGGGTGAGTACTTTTACTTCACCTCCTGTTCTTGATGTTATGAAGAAGGTGGAAATGGATGTGGTTGTCGTTCCTCCATCCGTTGTTATGGATGAGGATGTGACTATTCGGAGCCGGCTTCTCTTTACGGGAAGAAGCGGAGCGATGGTGCAAGTTGTTAAGGCTAGCCCTATTGAGGCCTCGGGTCCAATTGAAGGGGGAGTGGCCCCCTCCAATCTCAACCAAAACGGACACCACGACGCCGACCCTGAGGAACCCGATGACGACGAATTCGAAGAAGAAGAAGAAGAAGACGACGACGACGACGACGAGGAGCCGCCGTCGCCGCTGCAGCGAAAGCCGTCCTCGGAGGAGTCACTGCGTTCGTCGAAGGCCAAGCTGGATGGCCTGGTCCGTCGGATGGAGAAGGAGAAAGTCGATCTGAGGGTGCACGATGTTGTGATCAGAGGGAACACCAAGACCAAGGAGTATCTGATCGAGGCCGAGCTCGAGGGGATTAGGAAGGCCACGACTATGCAGGAGCTTCTCGAGGCCTCGGCTAAGGCCAATGCCAAGCTTAAAGAGCTCGATATCTTCGATTCCGTTCGGATCACGCTCGATTCCGGCCCGCCGGAGCTGCCGCGAACCGCCAACGTCCTCGTCGACGTCGTCGAGACTGAGAGTGTGATTACTGGTGAACTCGGCTGTTACACTAAGCCGGCGGCTAGATCTTGGACAGCTGAGGGTTCACTCAAGTTTAAAAATTTGTTTGGATATGGGGATATGTGGGATGGTTCTTTGGCATATGGTCCCAGCCAAACATCGGAAATAAGTGCTGGTGTGCTTTTACCCCGGTTCAAAGGATTTATAACTCCTGTGACAGCGCGTGCATTCCTTCTTTCCCAAGATTGGCTGGAGTTATCCTCTTATAAAGAGCGAATGGCTGGGCTCTCTCTAAGCTTATTTTCAACCAGGCATCATGATGTTGTATACAACCTTGGTTGGCGTACACTTACAGATCCATCACAAATGGCCTCCAAGTCAATTAGAAGGCAGCTTGGCCATGGCTTACTTTCATCCATAAAGTATACATTTACACTTGATAGGAGAAATTCATATTTGAGGCCAACTCGAGGCTATTCTTTTGTTTCTTCTAGTCATGTTGGTGGCCTTTCCCCTGATAGTCGGAGTGAGCTTGATCTTCGTTATGCAGTGCCATTTGGATTTTATCATGCTGCACTCAACTTTGGGGTCTCTGGGGGAGTGGTCTTTCCTTGGGGGAATGGGTTTTTGAACAAGCCCTCATCTCTTCCAGAGCGGTTCTTCTTAGGTGGTGATTTCTCTCCTGTTTGCACTCCTGGGGGCCCTGCAACAGTGTGGGGATTTAAAACAAGAGCACTAGGCCCCACTGAACCAAGAAGGCATGTCAGAGATAATTCTAATGATGAGAATTCAGAATCCTCTGGAAGGGATTTTGTTGGAGGAGATCTTGCTCTTTCTGCATTTGCAGACATTTCATTTGACCTTCCATTGCGCTGGTTAAGAGAACGCGGAGTTCATGGACATGTTTTTGCGGGTGCGGGGAATGTAGCAAAACTGTCGGAGAACGAGTTCGAAAGTTTTCCTTGCAGAGGTTCTTTGAGTCATTTCGCAGTTCAGTTGGAGCTGGAATTGTCATCCCCACAAAATTATTTCGCCTTGAGGAAAATCAGTGGACAGTGCAACTACTACTATATCCTGAAGCAATTTGAGCATGATGGCGGAAAGACTGGCTTTCGGTTTAGCATCTCAGCTCCATCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008150 GO:0009987 GO:0016043 GO:0042407 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag POTRA

Protein Analysis

654

Amino Acids

71.99

Weight (kDa)

5.46

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Omp85	PF01103	308 - 649	8.1e-20	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11070 AT5G05520
fragaria_vesca	FvH4_7g24890 FvH4_7g24890
malus_domestica	MD01G1156600.v1.1 MD07G1225300.v1.1
prunus_persica	Prupe.2G254100_v2.0.a1 Prupe.2G254100_v2.0.a1
pyrus_communis	pycom07g20400
rosa_chinensis	RchiOBHm_Chr1g0370771
rosa_laevigata	RLG00000027011
rosa_multiflora	Rmu_sc0009474.1_g000003 Rmu_sc0009615.1_g000003 Rmu_sc0029761.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286250
rosa_rugosa	Rorug01G0359500 Rorug01G0359600
rosa_samantha	Rh1AG368700 Rh1BG332300 Rh1CG346200 Rh1DG363700
rosa_wichuraiana	Rw1G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1028, 1089
AatII	GACGTC	2 cut(s)	83, 828
AccBSI	CCGCTC	1 cut(s)	1477
AccI	GTMKAC	3 cut(s)	822, 1149, 1247
AccII	CGCG	3 cut(s)	802, 1045, 1710
AclWI	GGATC	2 cut(s)	776, 1172
AcoI	YGGCCR	1 cut(s)	1219
AcsI	RAATTY	4 cut(s)	449, 922, 1270, 1609
AcuI	CTGAAG	1 cut(s)	1919
AcyI	GRCGYC	3 cut(s)	80, 420, 825
AfaI	GTAC	2 cut(s)	190, 1168
AfiI	CCNNNNNNNGG	8 cut(s)	355, 374, 580, 982, 1068, 1292, 1626, 1790
AflIII	ACRYGT	1 cut(s)	1723
AgsI	TTSAA	4 cut(s)	374, 1018, 1128, 1453
AjnI	CCWGG	3 cut(s)	567, 1130, 1516
AloI	GAACNNNNNNTCC	2 cut(s)	1754, 1786
Alw21I	GWGCWC	6 cut(s)	38, 110, 612, 669, 747, 1558
Alw26I	GTCTC	2 cut(s)	827, 1417
Alw44I	GTGCAC	1 cut(s)	608
AlwI	GGATC	2 cut(s)	776, 1172
Ama87I	CYCGRG	5 cut(s)	37, 361, 668, 707, 1290
ApaI	GGGCCC	1 cut(s)	1526
ApaLI	GTGCAC	1 cut(s)	608
ApeKI	GCWGC	5 cut(s)	508, 511, 796, 1213, 1394
ApoI	RAATTY	4 cut(s)	449, 922, 1270, 1609
ArsI	GACNNNNNNTTYG	4 cut(s)	434, 466, 1661, 1693
Asp700I	GAANNNNTTC	2 cut(s)	1769, 1779
AspLEI	GCGC	2 cut(s)	1045, 1695
AspS9I	GGNCC	8 cut(s)	365, 385, 571, 785, 968, 1522, 1523, 1562
AsuC2I	CCSGG	2 cut(s)	182, 1012
AsuHPI	GGTGA	4 cut(s)	192, 196, 866, 1505
AsuII	TTCGAA	2 cut(s)	453, 1773
AsuNHI	GCTAGC	1 cut(s)	344
AvaI	CYCGRG	5 cut(s)	37, 361, 668, 707, 1290
AvaII	GGWCC	3 cut(s)	365, 571, 968
AxyI	CCTNAGG	1 cut(s)	429
BaeGI	GKGCMC	2 cut(s)	612, 1526
BalI	TGGCCA	1 cut(s)	1221
BanII	GRGCYC	6 cut(s)	38, 110, 669, 747, 1110, 1526
BarI	GAAGNNNNNNTAC	2 cut(s)	181, 213
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	6 cut(s)	38, 110, 612, 669, 747, 1558
BbvCI	CCTCAGC	1 cut(s)	900
BbvI	GCAGC	5 cut(s)	495, 523, 783, 1225, 1381
BceAI	ACGGC	2 cut(s)	484, 505
BcgI	CGANNNNNNTGC	2 cut(s)	1740, 1774
BciT130I	CCWGG	3 cut(s)	569, 1132, 1518
BclI	TGATCA	1 cut(s)	621
BcnI	CCSGG	2 cut(s)	182, 1012
BcoDI	GTCTC	2 cut(s)	827, 1417
BfaI	CTAG	4 cut(s)	345, 885, 1314, 1559
BfmI	CTRYAG	1 cut(s)	509
BglII	AGATCT	2 cut(s)	887, 1645
BisI	GCNGC	9 cut(s)	497, 506, 509, 512, 797, 800, 882, 1214, 1395
BlsI	GCNGC	9 cut(s)	498, 507, 510, 513, 798, 801, 883, 1215, 1396
BmcAI	AGTACT	1 cut(s)	190
Bme1390I	CCNGG	5 cut(s)	182, 569, 1012, 1132, 1518
Bme18I	GGWCC	3 cut(s)	365, 571, 968
BmeT110I	CYCGRG	5 cut(s)	37, 361, 668, 707, 1290
BmgT120I	GGNCC	8 cut(s)	365, 385, 571, 785, 968, 1522, 1523, 1562
BmiI	GGNNCC	9 cut(s)	293, 366, 387, 435, 495, 970, 1523, 1524, 1564
BmrFI	CCNGG	5 cut(s)	182, 569, 1012, 1132, 1518
BmsI	GCATC	2 cut(s)	1144, 1953
BmtI	GCTAGC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	477
BplI	GAGNNNNNCTC	4 cut(s)	1067, 1099, 1273, 1305
BpmI	CTGGAG	1 cut(s)	1094
Bpu10I	CCTNAGC	3 cut(s)	54, 720, 900
Bpu14I	TTCGAA	2 cut(s)	453, 1773
BpuEI	CTTGAG	2 cut(s)	896, 1879
BpuMI	CCSGG	2 cut(s)	182, 1012
BsaHI	GRCGYC	3 cut(s)	80, 420, 825
BsaI	GGTCTC	1 cut(s)	1417
BsaJI	CCNNGG	9 cut(s)	360, 525, 642, 714, 1010, 1156, 1222, 1433, 1517
BsaXI	ACNNNNNCTCC	8 cut(s)	187, 217, 312, 342, 485, 515, 1754, 1784
Bsc4I	CCNNNNNNNGG	8 cut(s)	355, 374, 580, 982, 1068, 1292, 1626, 1790
Bse118I	RCCGGY	2 cut(s)	294, 877
Bse1I	ACTGG	2 cut(s)	856, 1933
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	1688
BseBI	CCWGG	3 cut(s)	569, 1132, 1518
BseDI	CCNNGG	9 cut(s)	360, 525, 642, 714, 1010, 1156, 1222, 1433, 1517
BseLI	CCNNNNNNNGG	8 cut(s)	355, 374, 580, 982, 1068, 1292, 1626, 1790
BseMI	GCAATG	1 cut(s)	1688
BseMII	CTCAG	5 cut(s)	420, 593, 828, 891, 1962
BseNI	ACTGG	2 cut(s)	856, 1933
BseRI	GAGGAG	4 cut(s)	34, 506, 545, 1656
BseSI	GKGCMC	2 cut(s)	612, 1526
BseXI	GCAGC	5 cut(s)	495, 523, 783, 1225, 1381
BseYI	CCCAGC	2 cut(s)	971, 1103
BsgI	GTGCAG	1 cut(s)	1380
Bsh1236I	CGCG	3 cut(s)	802, 1045, 1710
Bsh1285I	CGRYCG	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	6 cut(s)	38, 110, 612, 669, 747, 1558
BsiHKCI	CYCGRG	5 cut(s)	37, 361, 668, 707, 1290
BsiSI	CCGG	6 cut(s)	181, 295, 783, 791, 878, 1012
BslFI	GGGAC	1 cut(s)	954
BslI	CCNNNNNNNGG	8 cut(s)	355, 374, 580, 982, 1068, 1292, 1626, 1790
BsmAI	GTCTC	2 cut(s)	827, 1417
BsmFI	GGGAC	1 cut(s)	954
BsmI	GAATGC	1 cut(s)	1049
Bso31I	GGTCTC	1 cut(s)	1417
BsoBI	CYCGRG	5 cut(s)	37, 361, 668, 707, 1290
Bsp119I	TTCGAA	2 cut(s)	453, 1773
Bsp120I	GGGCCC	1 cut(s)	1522
Bsp1286I	GDGCHC	8 cut(s)	38, 110, 612, 669, 747, 1110, 1526, 1558
Bsp143I	GATC	8 cut(s)	598, 621, 654, 768, 887, 1177, 1357, 1645
Bsp19I	CCATGG	1 cut(s)	1222
BspCNI	CTCAG	5 cut(s)	421, 594, 829, 892, 1961
BspFNI	CGCG	3 cut(s)	802, 1045, 1710
BspHI	TCATGA	1 cut(s)	1138
BspLI	GGNNCC	9 cut(s)	293, 366, 387, 435, 495, 970, 1523, 1524, 1564
BspMAI	CTGCAG	1 cut(s)	513
BspOI	GCTAGC	1 cut(s)	348
BspPI	GGATC	2 cut(s)	776, 1172
BspT104I	TTCGAA	2 cut(s)	453, 1773
BspTNI	GGTCTC	1 cut(s)	1417
BsrBI	CCGCTC	1 cut(s)	1477
BsrDI	GCAATG	1 cut(s)	1688
BsrFI	RCCGGY	2 cut(s)	294, 877
BsrI	ACTGG	2 cut(s)	856, 1933
BssAI	RCCGGY	2 cut(s)	294, 877
BssECI	CCNNGG	9 cut(s)	360, 525, 642, 714, 1010, 1156, 1222, 1433, 1517
BssMI	GATC	8 cut(s)	598, 621, 654, 768, 887, 1177, 1357, 1645
BssNAI	GTATAC	2 cut(s)	1150, 1248
BssNI	GRCGYC	3 cut(s)	80, 420, 825
BssT1I	CCWWGG	4 cut(s)	642, 1156, 1222, 1433
Bst1107I	GTATAC	2 cut(s)	1150, 1248
Bst2UI	CCWGG	3 cut(s)	569, 1132, 1518
Bst4CI	ACNGT	3 cut(s)	1534, 1758, 1878
Bst6I	CTCTTC	1 cut(s)	1473
BstACI	GRCGYC	3 cut(s)	80, 420, 825
BstBI	TTCGAA	2 cut(s)	453, 1773
BstC8I	GCNNGC	5 cut(s)	296, 346, 788, 879, 1047
BstDSI	CCRYGG	1 cut(s)	1222
BstENI	CCTNNNNNAGG	2 cut(s)	1624, 1788
BstFNI	CGCG	3 cut(s)	802, 1045, 1710
BstHHI	GCGC	2 cut(s)	1045, 1695
BstKTI	GATC	8 cut(s)	601, 624, 657, 771, 890, 1180, 1360, 1648
BstMAI	GTCTC	2 cut(s)	827, 1417
BstMBI	GATC	8 cut(s)	598, 621, 654, 768, 887, 1177, 1357, 1645
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	8 cut(s)	502, 505, 511, 517, 742, 796, 1658, 1909
BstNI	CCWGG	3 cut(s)	569, 1132, 1518
BstNSI	RCATGY	2 cut(s)	1586, 1727
BstSCI	CCNGG	5 cut(s)	180, 567, 1010, 1130, 1516
BstSFI	CTRYAG	1 cut(s)	509
BstSLI	GKGCMC	2 cut(s)	612, 1526
BstUI	CGCG	3 cut(s)	802, 1045, 1710
BstV1I	GCAGC	5 cut(s)	495, 523, 783, 1225, 1381
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	3 cut(s)	887, 1177, 1645
BstXI	CCANNNNNNTGG	1 cut(s)	1695
BstYI	RGATCY	3 cut(s)	887, 1177, 1645
BstZ17I	GTATAC	2 cut(s)	1150, 1248
Bsu36I	CCTNAGG	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	1222
BtgZI	GCGATG	1 cut(s)	338
BtsI	GCAGTG	2 cut(s)	536, 1377
BtsIMutI	CAGTG	6 cut(s)	536, 1377, 1539, 1566, 1876, 1883
Cac8I	GCNNGC	5 cut(s)	296, 346, 788, 879, 1047
CciI	TCATGA	1 cut(s)	1138
CfoI	GCGC	2 cut(s)	1045, 1695
Cfr10I	RCCGGY	2 cut(s)	294, 877
Cfr13I	GGNCC	8 cut(s)	365, 385, 571, 785, 968, 1522, 1523, 1562
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	189, 1167
CviAII	CATG	8 cut(s)	1139, 1223, 1319, 1391, 1583, 1718, 1724, 1913
CviQI	GTAC	2 cut(s)	189, 1167
DpnI	GATC	8 cut(s)	600, 623, 656, 770, 889, 1179, 1359, 1647
DpnII	GATC	8 cut(s)	598, 621, 654, 768, 887, 1177, 1357, 1645
DraI	TTTAAA	2 cut(s)	919, 1546
EaeI	YGGCCR	1 cut(s)	1219
Eam1104I	CTCTTC	1 cut(s)	1473
EarI	CTCTTC	1 cut(s)	1473
EciI	GGCGGA	2 cut(s)	109, 1935
Ecl136II	GAGCTC	4 cut(s)	36, 108, 667, 745
Eco130I	CCWWGG	4 cut(s)	642, 1156, 1222, 1433
Eco147I	AGGCCT	2 cut(s)	359, 713
Eco24I	GRGCYC	6 cut(s)	38, 110, 669, 747, 1110, 1526
Eco31I	GGTCTC	1 cut(s)	1417
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	3 cut(s)	365, 571, 968
Eco53kI	GAGCTC	4 cut(s)	36, 108, 667, 745
Eco57I	CTGAAG	1 cut(s)	1919
Eco81I	CCTNAGG	1 cut(s)	429
Eco88I	CYCGRG	5 cut(s)	37, 361, 668, 707, 1290
EcoICRI	GAGCTC	4 cut(s)	36, 108, 667, 745
EcoNI	CCTNNNNNAGG	2 cut(s)	1624, 1788
EcoO109I	RGGNCCY	3 cut(s)	1522, 1523, 1562
EcoRI	GAATTC	2 cut(s)	449, 1609
EcoRII	CCWGG	3 cut(s)	567, 1130, 1516
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	4 cut(s)	642, 1156, 1222, 1433
EcoT38I	GRGCYC	6 cut(s)	38, 110, 669, 747, 1110, 1526
ErhI	CCWWGG	4 cut(s)	642, 1156, 1222, 1433
FaeI	CATG	8 cut(s)	1142, 1226, 1322, 1394, 1586, 1721, 1727, 1916
FalI	AAGNNNNNCTT	4 cut(s)	1768, 1800, 1916, 1948
FaqI	GGGAC	1 cut(s)	954
FatI	CATG	8 cut(s)	1138, 1222, 1318, 1390, 1582, 1717, 1723, 1912
FauI	CCCGC	3 cut(s)	795, 1726, 1732
FauNDI	CATATG	1 cut(s)	964
FbaI	TGATCA	1 cut(s)	621
FblI	GTMKAC	3 cut(s)	822, 1149, 1247
Fnu4HI	GCNGC	9 cut(s)	497, 506, 509, 512, 797, 800, 882, 1214, 1395
FriOI	GRGCYC	6 cut(s)	38, 110, 669, 747, 1110, 1526
Fsp4HI	GCNGC	9 cut(s)	497, 506, 509, 512, 797, 800, 882, 1214, 1395
FspBI	CTAG	4 cut(s)	345, 885, 1314, 1559
GlaI	GCGC	2 cut(s)	1044, 1694
GluI	GCNGC	9 cut(s)	497, 506, 509, 512, 797, 800, 882, 1214, 1395
GsaI	CCCAGC	2 cut(s)	975, 1107
GsuI	CTGGAG	1 cut(s)	1094
HapII	CCGG	6 cut(s)	181, 295, 783, 791, 878, 1012
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	2 cut(s)	1045, 1695
Hin1I	GRCGYC	3 cut(s)	80, 420, 825
Hin1II	CATG	8 cut(s)	1142, 1226, 1322, 1394, 1586, 1721, 1727, 1916
Hin6I	GCGC	2 cut(s)	1043, 1693
HinP1I	GCGC	2 cut(s)	1043, 1693
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HindIII	AAGCTT	2 cut(s)	734, 1117
HinfI	GANTC	5 cut(s)	533, 758, 779, 1616, 1801
HpaII	CCGG	6 cut(s)	181, 295, 783, 791, 878, 1012
HphI	GGTGA	4 cut(s)	192, 196, 866, 1505
Hpy166II	GTNNAC	8 cut(s)	610, 823, 857, 908, 1150, 1169, 1248, 1874
Hpy188III	TCNNGA	8 cut(s)	128, 212, 707, 832, 1139, 1472, 1623, 1897
Hpy8I	GTNNAC	8 cut(s)	610, 823, 857, 908, 1150, 1169, 1248, 1874
HpyCH4III	ACNGT	3 cut(s)	1534, 1758, 1878
HpyCH4IV	ACGT	3 cut(s)	80, 813, 825
HpyF10VI	GCNNNNNNNGC	8 cut(s)	502, 505, 511, 517, 742, 796, 1658, 1909
HpySE526I	ACGT	3 cut(s)	80, 813, 825
Hsp92I	GRCGYC	3 cut(s)	80, 420, 825
Hsp92II	CATG	8 cut(s)	1142, 1226, 1322, 1394, 1586, 1721, 1727, 1916
HspAI	GCGC	2 cut(s)	1043, 1693
KroI	GCCGGC	2 cut(s)	294, 877
KroNI	GCCGGC	2 cut(s)	296, 879
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	8 cut(s)	598, 621, 654, 768, 887, 1177, 1357, 1645
LmnI	GCTCC	8 cut(s)	113, 291, 320, 493, 700, 793, 1822, 1957
Lsp1109I	GCAGC	5 cut(s)	495, 523, 783, 1225, 1381
LweI	GCATC	2 cut(s)	1144, 1953
MaeI	CTAG	4 cut(s)	345, 885, 1314, 1559
MaeII	ACGT	3 cut(s)	80, 813, 825
MaeIII	GTNAC	4 cut(s)	280, 534, 866, 1036
MalI	GATC	8 cut(s)	600, 623, 656, 770, 889, 1179, 1359, 1647
MbiI	CCGCTC	1 cut(s)	1477
MboI	GATC	8 cut(s)	598, 621, 654, 768, 887, 1177, 1357, 1645
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	3 cut(s)	887, 1177, 1645
MhlI	GDGCHC	8 cut(s)	38, 110, 612, 669, 747, 1110, 1526, 1558
MlsI	TGGCCA	1 cut(s)	1221
MluNI	TGGCCA	1 cut(s)	1221
MlyI	GAGTC	2 cut(s)	542, 1810
MmeI	TCCRAC	5 cut(s)	557, 1325, 1618, 1740, 1800
Mox20I	TGGCCA	1 cut(s)	1221
MroNI	GCCGGC	2 cut(s)	294, 877
MroXI	GAANNNNTTC	2 cut(s)	1769, 1779
MscI	TGGCCA	1 cut(s)	1221
MseI	TTAA	5 cut(s)	339, 738, 918, 1545, 1700
MslI	CAYNNNNRTG	4 cut(s)	692, 1140, 1323, 1722
Msp20I	TGGCCA	1 cut(s)	1221
MspA1I	CMGCKG	2 cut(s)	508, 899
MspI	CCGG	6 cut(s)	181, 295, 783, 791, 878, 1012
MspR9I	CCNGG	5 cut(s)	182, 569, 1012, 1132, 1518
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	1049
MvaI	CCWGG	3 cut(s)	569, 1132, 1518
MvnI	CGCG	3 cut(s)	802, 1045, 1710
MwoI	GCNNNNNNNGC	8 cut(s)	502, 505, 511, 517, 742, 796, 1658, 1909
NaeI	GCCGGC	2 cut(s)	296, 879
NciI	CCSGG	2 cut(s)	182, 1012
NcoI	CCATGG	1 cut(s)	1222
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	8 cut(s)	598, 621, 654, 768, 887, 1177, 1357, 1645
NgoMIV	GCCGGC	2 cut(s)	294, 877
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	8 cut(s)	1142, 1226, 1322, 1394, 1586, 1721, 1727, 1916
NlaIV	GGNNCC	9 cut(s)	293, 366, 387, 435, 495, 970, 1523, 1524, 1564
NmeAIII	GCCGAG	3 cut(s)	688, 695, 840
NmuCI	GTSAC	3 cut(s)	280, 534, 1036
NspI	RCATGY	2 cut(s)	1586, 1727
NspV	TTCGAA	2 cut(s)	453, 1773
PaeR7I	CTCGAG	3 cut(s)	668, 707, 1290
PagI	TCATGA	1 cut(s)	1138
PceI	AGGCCT	2 cut(s)	359, 713
PciI	ACATGT	1 cut(s)	1723
PcsI	WCGNNNNNNNCGW	9 cut(s)	414, 450, 480, 483, 486, 753, 819, 825, 828
PctI	GAATGC	1 cut(s)	1049
PdiI	GCCGGC	2 cut(s)	296, 879
PdmI	GAANNNNTTC	2 cut(s)	1769, 1779
PfeI	GAWTC	3 cut(s)	758, 779, 1616
PflFI	GACNNNGTC	1 cut(s)	827
PkrI	GCNGC	9 cut(s)	498, 507, 510, 513, 798, 801, 883, 1215, 1396
PleI	GAGTC	2 cut(s)	541, 1809
PpsI	GAGTC	2 cut(s)	541, 1809
PscI	ACATGT	1 cut(s)	1723
PsiI	TTATAA	2 cut(s)	1028, 1089
Psp124BI	GAGCTC	4 cut(s)	38, 110, 669, 747
Psp6I	CCWGG	3 cut(s)	567, 1130, 1516
PspFI	CCCAGC	2 cut(s)	971, 1103
PspGI	CCWGG	3 cut(s)	567, 1130, 1516
PspN4I	GGNNCC	9 cut(s)	293, 366, 387, 435, 495, 970, 1523, 1524, 1564
PspOMI	GGGCCC	1 cut(s)	1522
PspPI	GGNCC	8 cut(s)	365, 385, 571, 785, 968, 1522, 1523, 1562
PspXI	VCTCGAGB	2 cut(s)	668, 1290
PstI	CTGCAG	1 cut(s)	513
PsuI	RGATCY	3 cut(s)	887, 1177, 1645
PsyI	GACNNNGTC	1 cut(s)	827
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	2 cut(s)	190, 1168
RsaNI	GTAC	2 cut(s)	189, 1167
RseI	CAYNNNNRTG	4 cut(s)	692, 1140, 1323, 1722
SacI	GAGCTC	4 cut(s)	38, 110, 669, 747
SalI	GTCGAC	1 cut(s)	821
SaqAI	TTAA	5 cut(s)	339, 738, 918, 1545, 1700
SatI	GCNGC	9 cut(s)	497, 506, 509, 512, 797, 800, 882, 1214, 1395
Sau3AI	GATC	8 cut(s)	598, 621, 654, 768, 887, 1177, 1357, 1645
Sau96I	GGNCC	8 cut(s)	365, 385, 571, 785, 968, 1522, 1523, 1562
ScaI	AGTACT	1 cut(s)	190
SchI	GAGTC	2 cut(s)	542, 1810
ScrFI	CCNGG	5 cut(s)	182, 569, 1012, 1132, 1518
SduI	GDGCHC	8 cut(s)	38, 110, 612, 669, 747, 1110, 1526, 1558
SfaNI	GCATC	2 cut(s)	1144, 1953
SfcI	CTRYAG	1 cut(s)	509
Sfr274I	CTCGAG	3 cut(s)	668, 707, 1290
SfuI	TTCGAA	2 cut(s)	453, 1773
SgrDI	CGTCGACG	1 cut(s)	821
SinI	GGWCC	3 cut(s)	365, 571, 968
SlaI	CTCGAG	3 cut(s)	668, 707, 1290
SmiMI	CAYNNNNRTG	4 cut(s)	692, 1140, 1323, 1722
SmlI	CTYRAG	5 cut(s)	668, 707, 911, 1290, 1858
SmoI	CTYRAG	5 cut(s)	668, 707, 911, 1290, 1858
SseBI	AGGCCT	2 cut(s)	359, 713
SspMI	CTAG	4 cut(s)	345, 885, 1314, 1559
SstI	GAGCTC	4 cut(s)	38, 110, 669, 747
StuI	AGGCCT	2 cut(s)	359, 713
StyD4I	CCNGG	5 cut(s)	180, 567, 1010, 1130, 1516
StyI	CCWWGG	4 cut(s)	642, 1156, 1222, 1433
TaaI	ACNGT	3 cut(s)	1534, 1758, 1878
TaiI	ACGT	3 cut(s)	83, 816, 828
TaqII	GACCGA	1 cut(s)	86
TatI	WGTACW	1 cut(s)	188
TauI	GCSGC	4 cut(s)	499, 508, 802, 884
TfiI	GAWTC	3 cut(s)	758, 779, 1616
Tru1I	TTAA	5 cut(s)	339, 738, 918, 1545, 1700
Tru9I	TTAA	5 cut(s)	339, 738, 918, 1545, 1700
TscAI	CASTG	6 cut(s)	543, 1377, 1539, 1573, 1876, 1883
TseFI	GTSAC	3 cut(s)	280, 534, 1036
TseI	GCWGC	5 cut(s)	508, 511, 796, 1213, 1394
Tsp45I	GTSAC	3 cut(s)	280, 534, 1036
TspDTI	ATGAA	5 cut(s)	236, 1224, 1263, 1665, 1706
TspGWI	ACGGA	4 cut(s)	250, 423, 563, 751
TspRI	CASTG	6 cut(s)	543, 1377, 1539, 1573, 1876, 1883
Tth111I	GACNNNGTC	1 cut(s)	827
VneI	GTGCAC	1 cut(s)	608
VpaK11BI	GGWCC	3 cut(s)	365, 571, 968
XagI	CCTNNNNNAGG	2 cut(s)	1624, 1788
XapI	RAATTY	4 cut(s)	449, 922, 1270, 1609
XceI	RCATGY	2 cut(s)	1586, 1727
XhoI	CTCGAG	3 cut(s)	668, 707, 1290
XmiI	GTMKAC	3 cut(s)	822, 1149, 1247
XmnI	GAANNNNTTC	2 cut(s)	1769, 1779
XspI	CTAG	4 cut(s)	345, 885, 1314, 1559
ZraI	GACGTC	2 cut(s)	81, 826
ZrmI	AGTACT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.