Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009225

Physical Location & Seq

Genomic Coordinates Reverse (-)

47550355 .. 47552176

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0359600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGGAAAAGAGAGATTTGTTTGGCAGATTACCAAACGATATCATTTGCCATATCATTTCTTTTCTTCCTTCAGAATCTGCATTAGAAACCAGTTTGATTTCAAGTAGATGGAGAGGTCTATGGAACACAGCTTTGGTTCAACATGTAGCTATAGATGAAGTTCCTGATGCAGTTGCTGTGTTTCTATCTCATTTTGACAAACTTGATCCCTTGAGGCACCCCAGAAGGCTAAAGTTGTACTTCGGCGAAGGTAGTGATGTGCTCCTAGCTACCATTGCAGCCAATGATAAACTTCACTTGGATTTTTCTATAGGGAAAAAGGAGGAGGAGTACCCTCCAAGGCATTTTGATTTGCAGTTGCAGCTTAAATGTGACCAGAATGTCCAAAACCTTATAGCTCACCCCCAACCTTGCGCCTCTACTTTCTCTGTCAAAACCCTTTATCTGAAATCAGTAACCAATGTTGTCAATGAGGCAATTTCTTCTATGTTTTCGAGTTTAGAGTTTCTTGAACACTTGAAGATCATTGAATGTGATGGGTTACAAAGTTTGCATATCGAGTCCAGTCCAAAGCTACTCAGCTTAAGCATCTTTGACTGTCAGCACCTCAAATCTCTCCACCTCAGAACCTCTAAACTTCGATCCTTTCATTACCGAGGTTTTCTCCCTAGGATTTGGCCAGAACATCATTTCAACCTTGCAGATGCCATGCTTGATTTCAGACTAGGCCCCGGCTACACAAGTTTCAGCAGTAGCGACTTTGATCCAATGTTGTTAACCCTAAAGAATGCTCAGGTTCTTAAATTATGCAGATGGGGTTTTCAGGCACTGATCTGGCCATTGATATCGCCTCTACAAGCAAATTTCATGTTTTATAAAGTGAAAGAGTTATGGTGGATTGATAAGGAGGAAGAAAGTTACGACAGTGATGCCTTAATCTCCTTTCTGAAATTGTGTCCTGTCATGGAAAGACTCTTTGTAACCAATGATCCTGAAAGCTACTGCATAACAAGCACAGCTCCAACCTCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008150 GO:0009987 GO:0016043 GO:0042407 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag POTRA

Protein Analysis

345

Amino Acids

39.7

Weight (kDa)

6.06

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 43	2.6e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	143 - 328	9.2e-09	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11070 AT5G05520
fragaria_vesca	FvH4_7g24890 FvH4_7g24890
malus_domestica	MD01G1156600.v1.1 MD07G1225300.v1.1
prunus_persica	Prupe.2G254100_v2.0.a1 Prupe.2G254100_v2.0.a1
pyrus_communis	pycom07g20400
rosa_chinensis	RchiOBHm_Chr1g0370771
rosa_laevigata	RLG00000027011
rosa_multiflora	Rmu_sc0009474.1_g000003 Rmu_sc0009615.1_g000003 Rmu_sc0029761.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286250
rosa_rugosa	Rorug01G0359500 Rorug01G0359600
rosa_samantha	Rh1AG368700 Rh1BG332300 Rh1CG346200 Rh1DG363700
rosa_wichuraiana	Rw1G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	879
AasI	GACNNNNNNGTC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	219
AclWI	GGATC	4 cut(s)	203, 639, 761, 986
AcoI	YGGCCR	2 cut(s)	680, 839
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	242, 335
AflII	CTTAAG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	6 cut(s)	105, 143, 515, 523, 533, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	9 cut(s)	134, 152, 272, 367, 401, 577, 585, 1002, 1022
AluI	AGCT	9 cut(s)	134, 152, 272, 367, 401, 577, 585, 1002, 1022
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	4 cut(s)	203, 639, 761, 986
AlwNI	CAGNNNCTG	3 cut(s)	80, 179, 832
AoxI	GGCC	3 cut(s)	680, 730, 839
ApeKI	GCWGC	2 cut(s)	281, 364
ApoI	RAATTY	1 cut(s)	865
AspA2I	CCTAGG	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	1 cut(s)	735
AsuHPI	GGTGA	1 cut(s)	395
AvrII	CCTAGG	1 cut(s)	671
BalI	TGGCCA	2 cut(s)	682, 841
BanI	GGYRCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	293, 376
BccI	CCATC	3 cut(s)	105, 533, 810
BcgI	CGANNNNNNTGC	2 cut(s)	914, 948
BcnI	CCSGG	1 cut(s)	735
BfaI	CTAG	3 cut(s)	269, 672, 728
BfmI	CTRYAG	2 cut(s)	153, 312
BfrI	CTTAAG	1 cut(s)	586
BisI	GCNGC	2 cut(s)	282, 365
BlnI	CCTAGG	1 cut(s)	671
BlsI	GCNGC	2 cut(s)	283, 366
Bme1390I	CCNGG	1 cut(s)	735
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	2 cut(s)	221, 733
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	4 cut(s)	160, 600, 697, 922
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
Bpu10I	CCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	2 cut(s)	235, 1015
BpuMI	CCSGG	1 cut(s)	735
BsaJI	CCNNGG	4 cut(s)	341, 658, 671, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bse1I	ACTGG	2 cut(s)	93, 567
Bse3DI	GCAATG	1 cut(s)	276
BseDI	CCNNGG	4 cut(s)	341, 658, 671, 733
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	3 cut(s)	595, 640, 809
BseNI	ACTGG	2 cut(s)	93, 567
BseRI	GAGGAG	2 cut(s)	341, 344
BseXI	GCAGC	2 cut(s)	293, 376
BshFI	GGCC	3 cut(s)	682, 732, 841
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	3 cut(s)	682, 732, 841
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	6 cut(s)	208, 525, 644, 766, 834, 991
BspANI	GGCC	3 cut(s)	682, 732, 841
BspCNI	CTCAG	3 cut(s)	594, 639, 808
BspLI	GGNNCC	2 cut(s)	221, 733
BspPI	GGATC	4 cut(s)	203, 639, 761, 986
BspT107I	GGYRCC	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	93, 567
BssECI	CCNNGG	4 cut(s)	341, 658, 671, 733
BssMI	GATC	6 cut(s)	208, 525, 644, 766, 834, 991
BssT1I	CCWWGG	2 cut(s)	341, 671
Bst4CI	ACNGT	2 cut(s)	602, 929
BstAFI	CTTAAG	1 cut(s)	586
BstDEI	CTNAG	3 cut(s)	581, 626, 795
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	6 cut(s)	211, 528, 647, 769, 837, 994
BstMBI	GATC	6 cut(s)	208, 525, 644, 766, 834, 991
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 364, 1014
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	2 cut(s)	153, 312
BstV1I	GCAGC	2 cut(s)	293, 376
BsuRI	GGCC	3 cut(s)	682, 732, 841
BtsIMutI	CAGTG	2 cut(s)	830, 934
CaiI	CAGNNNCTG	3 cut(s)	80, 179, 832
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	2 cut(s)	241, 334
CviAII	CATG	4 cut(s)	146, 712, 871, 967
CviQI	GTAC	2 cut(s)	241, 334
DdeI	CTNAG	3 cut(s)	581, 626, 795
DpnI	GATC	6 cut(s)	210, 527, 646, 768, 836, 993
DpnII	GATC	6 cut(s)	208, 525, 644, 766, 834, 991
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	2 cut(s)	680, 839
Eco130I	CCWWGG	2 cut(s)	341, 671
Eco32I	GATATC	2 cut(s)	43, 849
Eco57I	CTGAAG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRV	GATATC	2 cut(s)	43, 849
EcoT14I	CCWWGG	2 cut(s)	341, 671
ErhI	CCWWGG	2 cut(s)	341, 671
FaeI	CATG	4 cut(s)	149, 715, 874, 970
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	4 cut(s)	145, 711, 870, 966
Fnu4HI	GCNGC	2 cut(s)	282, 365
Fsp4HI	GCNGC	2 cut(s)	282, 365
FspBI	CTAG	3 cut(s)	269, 672, 728
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	2 cut(s)	282, 365
HaeIII	GGCC	3 cut(s)	682, 732, 841
HapII	CCGG	1 cut(s)	735
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	4 cut(s)	149, 715, 874, 970
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	1 cut(s)	780
HindII	GTYRAC	1 cut(s)	780
HinfI	GANTC	3 cut(s)	77, 563, 975
HpaI	GTTAAC	1 cut(s)	780
HpaII	CCGG	1 cut(s)	735
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	780
Hpy188I	TCNGA	5 cut(s)	76, 450, 629, 725, 951
Hpy188III	TCNNGA	4 cut(s)	167, 512, 995, 1032
Hpy8I	GTNNAC	1 cut(s)	780
HpyAV	CCTTC	3 cut(s)	81, 222, 245
HpyCH4III	ACNGT	2 cut(s)	602, 929
HpyCH4V	TGCA	9 cut(s)	83, 173, 281, 358, 364, 556, 704, 813, 1008
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 364, 1014
HpyF3I	CTNAG	3 cut(s)	581, 626, 795
Hsp92II	CATG	4 cut(s)	149, 715, 874, 970
HspAI	GCGC	1 cut(s)	417
KspAI	GTTAAC	1 cut(s)	780
Kzo9I	GATC	6 cut(s)	208, 525, 644, 766, 834, 991
LmnI	GCTCC	2 cut(s)	270, 1027
Lsp1109I	GCAGC	2 cut(s)	293, 376
LweI	GCATC	4 cut(s)	160, 600, 697, 922
MaeI	CTAG	3 cut(s)	269, 672, 728
MaeIII	GTNAC	5 cut(s)	374, 457, 543, 920, 982
MalI	GATC	6 cut(s)	210, 527, 646, 768, 836, 993
MboI	GATC	6 cut(s)	208, 525, 644, 766, 834, 991
MboII	GAAGA	4 cut(s)	59, 477, 535, 926
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	2 cut(s)	682, 841
MluCI	AATT	4 cut(s)	480, 806, 865, 953
MluNI	TGGCCA	2 cut(s)	682, 841
MlyI	GAGTC	2 cut(s)	572, 969
Mox20I	TGGCCA	2 cut(s)	682, 841
MscI	TGGCCA	2 cut(s)	682, 841
MseI	TTAA	5 cut(s)	369, 587, 779, 804, 938
Msp20I	TGGCCA	2 cut(s)	682, 841
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	1 cut(s)	735
MspR9I	CCNGG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	796
MwoI	GCNNNNNNNGC	3 cut(s)	278, 364, 1014
NciI	CCSGG	1 cut(s)	735
NdeII	GATC	6 cut(s)	208, 525, 644, 766, 834, 991
NlaIII	CATG	4 cut(s)	149, 715, 874, 970
NlaIV	GGNNCC	2 cut(s)	221, 733
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	149
PciI	ACATGT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	796
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	283, 366
PleI	GAGTC	2 cut(s)	571, 969
PpsI	GAGTC	2 cut(s)	571, 969
PscI	ACATGT	1 cut(s)	145
PsiI	TTATAA	1 cut(s)	879
PspN4I	GGNNCC	2 cut(s)	221, 733
PspPI	GGNCC	1 cut(s)	731
PstNI	CAGNNNCTG	3 cut(s)	80, 179, 832
RsaI	GTAC	2 cut(s)	242, 335
RsaNI	GTAC	2 cut(s)	241, 334
SaqAI	TTAA	5 cut(s)	369, 587, 779, 804, 938
SatI	GCNGC	2 cut(s)	282, 365
Sau3AI	GATC	6 cut(s)	208, 525, 644, 766, 834, 991
Sau96I	GGNCC	1 cut(s)	731
SchI	GAGTC	2 cut(s)	572, 969
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	4 cut(s)	160, 600, 697, 922
SfcI	CTRYAG	2 cut(s)	153, 312
SmlI	CTYRAG	3 cut(s)	214, 586, 1030
SmoI	CTYRAG	3 cut(s)	214, 586, 1030
Sse9I	AATT	4 cut(s)	480, 806, 865, 953
SspMI	CTAG	3 cut(s)	269, 672, 728
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	2 cut(s)	341, 671
TaaI	ACNGT	2 cut(s)	602, 929
TaqI	TCGA	3 cut(s)	497, 561, 643
TasI	AATT	4 cut(s)	480, 806, 865, 953
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	5 cut(s)	369, 587, 779, 804, 938
Tru9I	TTAA	5 cut(s)	369, 587, 779, 804, 938
TscAI	CASTG	2 cut(s)	837, 934
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	281, 364
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	174, 641, 859
TspRI	CASTG	2 cut(s)	837, 934
Vha464I	CTTAAG	1 cut(s)	586
XapI	RAATTY	1 cut(s)	865
XceI	RCATGY	1 cut(s)	149
XmaJI	CCTAGG	1 cut(s)	671
XspI	CTAG	3 cut(s)	269, 672, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.