AT3G11490

P21-Rho-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011795
Physical Location & Seq
Reverse (-)
3617264 .. 3620064
2801 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11490.1

Sequence Viewer

Length: 1308 bp
ATGGCTAAAGTTCTAAAATCGAGCCAATCATGTCATTTCCCTTCACCTTCAAGCTCTTCTTCTACATCATGTGGAGGAGGCAATGATGGTAGTAATAGAGACCCACATTCTCCTTTTAACATTTCTCGTCGTGAGGAAGAGGAAGAAGAGGAAGAGAGAAGCGAGAAAGAGAGAGAAAGATTCGAGCTTTCATCTGCATTGGAGATTCTTGTTTCTGCTATTAGAAGGTCTGTGATTGGTGGGTGTGTTGGTGAAGAGGATCTTTGTTCAATGGAGATTGGTGTTCCTACAGATGTTAGACATGTCGCTCATGTTACCTTTGATCGTTTCCATGGCTTCCTTGGCTTGCCTGTTGAGTTTGAACCTGAAGTCCCTAGACGAGCTCCTAGTGCAAGTGCAACCGTGTTTGGAGTCTCTACTGAATCAATGCAGCTATCTTATGATACTAGAGGGAACATCGTGCCTACGATACTTTTGATGATGCAGAGTCACTTGTACAGTAGAGGCGGATTGCGGGTAGAGGGAATTTTCAGGATTAATGGTGAGAATGGTCAAGAAGAGTACATAAGAGAAGAGTTGAATAAAGGTATTATACCTGATAACATTGATGTCCACTGCTTAGCAAGTCTCATTAAGGCTTGGTTTAGGGAACTTCCTAGTGGCGTTTTGGATTCACTTTCACCAGAGCAAGTAATGGAGTCTGAGAGTGAAGATGAGTGTGTGGAGCTTGTAAGGCTTCTTCCTTCAACAGAAGCTTCTTTGTTAGATTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGATGTTGGATCCATTGACGGCTCTAATGTATGCTGTGCAAGTTATGAACTTTCTGAAAACACTTATTGTGAAGACGCTTAAAGACCGAAAAGAATCTAGAGATAAGTTGGTTCCAGCCTCAAATCCAAGTCCTCGGGACCATAATGGTGATCAGAGCAGCAGTAGACAGTTGTTACATCTCATGAAAGCTAACAAGGAGGAAACTTTAGACAACTTTGAGGCGGAGATGAAAGACAAAGAAGAGTCTGCAGATGAAGAAGAAGAAGAATGTGCCGAATCTGTAGAACTTGTTGACATAAAAAAGTCTTCTCTGGTTAATAACAGCAGTGGAGGTTTTGGACAGAAACACATTGGTTGGGAGGAGCAGAGAACCATGTCGAAAGCGAGTAGTATTGTGGGACGTGTGAATTACAGAGTTGAGCTATTCGAAGCTTGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009628 GO:0016020 GO:0034059 GO:0036293 GO:0044464 GO:0050896 GO:0070482 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD RhoGAP

Protein Analysis

435

Amino Acids

48.75

Weight (kDa)

4.84

Isoelectric Point (pI)

70.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RhoGAP PF00620 155 - 288 3.6e-23 RhoGAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011795)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11490
fragaria_vesca FvH4_6g19150
malus_domestica MD12G1027300.v1.1 MD14G1027500.v1.1
prunus_persica Prupe.7G104200_v2.0.a1
pyrus_communis pycom12g02620 pycom14g02620
rosa_chinensis RchiOBHm_Chr3g0474261
rosa_laevigata RLG00000023935
rosa_multiflora Rmu_sc0001803.1_g000025 Rmu_sc0004507.1_g000020 Rmu_sc0029669.1_g000001
rosa_roxburghii Rroxscaffold_6G00407400
rosa_rugosa Rorug03G0139800
rosa_samantha Rh3AG190400 Rh3BG219600 Rh3CG214800 Rh3DG215100
rosa_wichuraiana Rw3G017370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1030
AciI CCGC 3 cut(s) 507, 514, 1088
AclWI GGATC 3 cut(s) 267, 869, 882
AcsI RAATTY 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 2 cut(s) 497, 563
AflIII ACRYGT 2 cut(s) 301, 1267
AgsI TTSAA 5 cut(s) 51, 270, 362, 580, 747
AjiI CACGTC 1 cut(s) 1268
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
AluBI AGCT 9 cut(s) 54, 187, 383, 433, 727, 755, 1055, 1288, 1298
AluI AGCT 9 cut(s) 54, 187, 383, 433, 727, 755, 1055, 1288, 1298
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 3 cut(s) 93, 418, 632
AlwI GGATC 3 cut(s) 267, 869, 882
Ama87I CYCGRG 1 cut(s) 999
ApeKI GCWGC 2 cut(s) 430, 1023
ApoI RAATTY 1 cut(s) 525
AseI ATTAAT 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 1003
AsuHPI GGTGA 5 cut(s) 36, 263, 554, 672, 1025
AsuII TTCGAA 1 cut(s) 1293
AvaI CYCGRG 1 cut(s) 999
AvaII GGWCC 1 cut(s) 1003
BamHI GGATCC 1 cut(s) 874
BanII GRGCYC 1 cut(s) 385
BarI GAAGNNNNNNTAC 2 cut(s) 723, 755
BbsI GAAGAC 2 cut(s) 944, 1164
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 2 cut(s) 442, 1035
BccI CCATC 2 cut(s) 80, 796
BceAI ACGGC 1 cut(s) 900
BclI TGATCA 1 cut(s) 1015
BcoDI GTCTC 3 cut(s) 93, 418, 632
BfaI CTAG 5 cut(s) 375, 387, 447, 657, 963
BfmI CTRYAG 3 cut(s) 288, 1113, 1146
BisI GCNGC 2 cut(s) 431, 1024
BlpI GCTNAGC 1 cut(s) 619
BlsI GCNGC 2 cut(s) 432, 1025
Bme18I GGWCC 1 cut(s) 1003
BmeT110I CYCGRG 1 cut(s) 999
BmgBI CACGTC 1 cut(s) 1268
BmgT120I GGNCC 1 cut(s) 1003
BmiI GGNNCC 3 cut(s) 876, 978, 1004
BmsI GCATC 1 cut(s) 471
BpiI GAAGAC 2 cut(s) 944, 1164
Bpu1102I GCTNAGC 1 cut(s) 619
Bpu14I TTCGAA 1 cut(s) 1293
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 3 cut(s) 331, 340, 998
Bse3DI GCAATG 3 cut(s) 88, 834, 846
BseDI CCNNGG 3 cut(s) 331, 340, 998
BseMI GCAATG 3 cut(s) 88, 834, 846
BseMII CTCAG 2 cut(s) 693, 878
BseRI GAGGAG 2 cut(s) 90, 1241
BseXI GCAGC 2 cut(s) 442, 1035
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 999
BslFI GGGAC 3 cut(s) 356, 1016, 1278
BsmAI GTCTC 3 cut(s) 93, 418, 632
BsmFI GGGAC 3 cut(s) 356, 1016, 1278
BsmI GAATGC 1 cut(s) 829
Bso31I GGTCTC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 999
Bsp119I TTCGAA 1 cut(s) 1293
Bsp1286I GDGCHC 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 4 cut(s) 259, 322, 874, 1015
Bsp1720I GCTNAGC 1 cut(s) 619
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 3 cut(s) 507, 514, 1088
BspCNI CTCAG 2 cut(s) 694, 877
BspHI TCATGA 1 cut(s) 1047
BspLI GGNNCC 3 cut(s) 876, 978, 1004
BspMAI CTGCAG 1 cut(s) 1117
BspPI GGATC 3 cut(s) 267, 869, 882
BspQI GCTCTTC 1 cut(s) 61
BspT104I TTCGAA 1 cut(s) 1293
BspTNI GGTCTC 1 cut(s) 93
BsrDI GCAATG 3 cut(s) 88, 834, 846
BsrGI TGTACA 1 cut(s) 495
BssECI CCNNGG 3 cut(s) 331, 340, 998
BssMI GATC 4 cut(s) 259, 322, 874, 1015
BssT1I CCWWGG 2 cut(s) 331, 340
Bst4CI ACNGT 3 cut(s) 403, 500, 1035
Bst6I CTCTTC 8 cut(s) 61, 132, 141, 147, 249, 552, 567, 1101
BstAUI TGTACA 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 1293
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 3 cut(s) 619, 702, 864
BstDSI CCRYGG 1 cut(s) 331
BstKTI GATC 4 cut(s) 262, 325, 877, 1018
BstMAI GTCTC 3 cut(s) 93, 418, 632
BstMBI GATC 4 cut(s) 259, 322, 874, 1015
BstMWI GCNNNNNNNGC 3 cut(s) 342, 389, 733
BstNSI RCATGY 1 cut(s) 305
BstSFI CTRYAG 3 cut(s) 288, 1113, 1146
BstV1I GCAGC 2 cut(s) 442, 1035
BstV2I GAAGAC 2 cut(s) 944, 1164
BstX2I RGATCY 2 cut(s) 259, 874
BstYI RGATCY 2 cut(s) 259, 874
BtgI CCRYGG 1 cut(s) 331
BtrI CACGTC 1 cut(s) 1268
BtsI GCAGTG 2 cut(s) 613, 1198
BtsIMutI CAGTG 2 cut(s) 613, 1198
Cac8I GCNNGC 1 cut(s) 347
CciI TCATGA 1 cut(s) 1047
Cfr13I GGNCC 1 cut(s) 1003
CseI GACGC 1 cut(s) 949
Csp6I GTAC 2 cut(s) 496, 562
CviAII CATG 8 cut(s) 30, 69, 302, 311, 332, 859, 1048, 1240
CviQI GTAC 2 cut(s) 496, 562
DdeI CTNAG 3 cut(s) 619, 702, 864
DpnI GATC 4 cut(s) 261, 324, 876, 1017
DpnII GATC 4 cut(s) 259, 322, 874, 1015
Eam1104I CTCTTC 8 cut(s) 61, 132, 141, 147, 249, 552, 567, 1101
EarI CTCTTC 8 cut(s) 61, 132, 141, 147, 249, 552, 567, 1101
EciI GGCGGA 2 cut(s) 522, 1103
Ecl136II GAGCTC 1 cut(s) 383
Eco130I CCWWGG 2 cut(s) 331, 340
Eco24I GRGCYC 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 1003
Eco53kI GAGCTC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 999
EcoICRI GAGCTC 1 cut(s) 383
EcoT14I CCWWGG 2 cut(s) 331, 340
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 2 cut(s) 331, 340
FaeI CATG 8 cut(s) 33, 72, 305, 314, 335, 862, 1051, 1243
FalI AAGNNNNNCTT 4 cut(s) 43, 75, 246, 278
FaqI GGGAC 3 cut(s) 356, 1016, 1278
FatI CATG 8 cut(s) 29, 68, 301, 310, 331, 858, 1047, 1239
FauI CCCGC 1 cut(s) 507
FbaI TGATCA 1 cut(s) 1015
FblI GTMKAC 1 cut(s) 1030
Fnu4HI GCNGC 2 cut(s) 431, 1024
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 431, 1024
FspBI CTAG 5 cut(s) 375, 387, 447, 657, 963
GluI GCNGC 2 cut(s) 431, 1024
HgaI GACGC 1 cut(s) 949
Hin1II CATG 8 cut(s) 33, 72, 305, 314, 335, 862, 1051, 1243
HincII GTYRAC 1 cut(s) 1159
HindII GTYRAC 1 cut(s) 1159
HindIII AAGCTT 2 cut(s) 753, 1296
HphI GGTGA 5 cut(s) 36, 263, 554, 672, 1025
Hpy166II GTNNAC 3 cut(s) 613, 1031, 1159
Hpy188I TCNGA 4 cut(s) 703, 867, 921, 1020
Hpy188III TCNNGA 6 cut(s) 131, 532, 554, 963, 1001, 1048
Hpy8I GTNNAC 3 cut(s) 613, 1031, 1159
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 4 cut(s) 51, 57, 219, 753
HpyCH4III ACNGT 3 cut(s) 403, 500, 1035
HpyCH4IV ACGT 1 cut(s) 1267
HpyCH4V TGCA 9 cut(s) 197, 392, 398, 430, 484, 839, 851, 904, 1115
HpyF10VI GCNNNNNNNGC 3 cut(s) 342, 389, 733
HpyF3I CTNAG 3 cut(s) 619, 702, 864
HpySE526I ACGT 1 cut(s) 1267
Hsp92II CATG 8 cut(s) 33, 72, 305, 314, 335, 862, 1051, 1243
Ksp22I TGATCA 1 cut(s) 1015
Kzo9I GATC 4 cut(s) 259, 322, 874, 1015
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 3 cut(s) 388, 724, 1228
LpnPI CCDG 7 cut(s) 363, 378, 517, 609, 696, 993, 1163
Lsp1109I GCAGC 2 cut(s) 442, 1035
LweI GCATC 1 cut(s) 471
MaeI CTAG 5 cut(s) 375, 387, 447, 657, 963
MaeII ACGT 1 cut(s) 1267
MaeIII GTNAC 3 cut(s) 313, 488, 1038
MalI GATC 4 cut(s) 261, 324, 876, 1017
MboI GATC 4 cut(s) 259, 322, 874, 1015
MflI RGATCY 2 cut(s) 259, 874
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 2 cut(s) 525, 1273
MlyI GAGTC 5 cut(s) 420, 496, 707, 856, 1118
MmeI TCCRAC 1 cut(s) 852
MseI TTAA 6 cut(s) 117, 537, 633, 813, 945, 1182
MslI CAYNNNNRTG 2 cut(s) 839, 1011
Mva1269I GAATGC 1 cut(s) 829
MwoI GCNNNNNNNGC 3 cut(s) 342, 389, 733
NcoI CCATGG 1 cut(s) 331
NdeII GATC 4 cut(s) 259, 322, 874, 1015
NlaIII CATG 8 cut(s) 33, 72, 305, 314, 335, 862, 1051, 1243
NlaIV GGNNCC 3 cut(s) 876, 978, 1004
NmuCI GTSAC 1 cut(s) 488
NspI RCATGY 1 cut(s) 305
NspV TTCGAA 1 cut(s) 1293
PagI TCATGA 1 cut(s) 1047
PciI ACATGT 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 61
PctI GAATGC 1 cut(s) 829
PfeI GAWTC 6 cut(s) 180, 205, 422, 671, 959, 1142
PkrI GCNGC 2 cut(s) 432, 1025
PleI GAGTC 5 cut(s) 419, 495, 706, 856, 1117
PpsI GAGTC 5 cut(s) 419, 495, 706, 856, 1117
PscI ACATGT 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 385
PspN4I GGNNCC 3 cut(s) 876, 978, 1004
PspPI GGNCC 1 cut(s) 1003
PstI CTGCAG 1 cut(s) 1117
PsuI RGATCY 2 cut(s) 259, 874
RsaI GTAC 2 cut(s) 497, 563
RsaNI GTAC 2 cut(s) 496, 562
RseI CAYNNNNRTG 2 cut(s) 839, 1011
SacI GAGCTC 1 cut(s) 385
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 6 cut(s) 117, 537, 633, 813, 945, 1182
SatI GCNGC 2 cut(s) 431, 1024
Sau3AI GATC 4 cut(s) 259, 322, 874, 1015
Sau96I GGNCC 1 cut(s) 1003
SchI GAGTC 5 cut(s) 420, 496, 707, 856, 1118
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 1 cut(s) 471
SfcI CTRYAG 3 cut(s) 288, 1113, 1146
SfuI TTCGAA 1 cut(s) 1293
SinI GGWCC 1 cut(s) 1003
SmiMI CAYNNNNRTG 2 cut(s) 839, 1011
Sse9I AATT 2 cut(s) 525, 1273
SsiI CCGC 3 cut(s) 507, 514, 1088
SspMI CTAG 5 cut(s) 375, 387, 447, 657, 963
SstI GAGCTC 1 cut(s) 385
StyI CCWWGG 2 cut(s) 331, 340
TaaI ACNGT 3 cut(s) 403, 500, 1035
TaiI ACGT 1 cut(s) 1270
TaqI TCGA 5 cut(s) 20, 183, 829, 1244, 1293
TaqII GACCGA 1 cut(s) 966
TasI AATT 2 cut(s) 525, 1273
TatI WGTACW 2 cut(s) 495, 561
TfiI GAWTC 6 cut(s) 180, 205, 422, 671, 959, 1142
Tru1I TTAA 6 cut(s) 117, 537, 633, 813, 945, 1182
Tru9I TTAA 6 cut(s) 117, 537, 633, 813, 945, 1182
TscAI CASTG 2 cut(s) 620, 1198
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 2 cut(s) 430, 1023
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 6 cut(s) 180, 836, 926, 1064, 1109, 1134
TspRI CASTG 2 cut(s) 620, 1198
VpaK11BI GGWCC 1 cut(s) 1003
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 1 cut(s) 525
XbaI TCTAGA 1 cut(s) 962
XceI RCATGY 1 cut(s) 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 1030
XspI CTAG 5 cut(s) 375, 387, 447, 657, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.