Rmu_sc0029669.1_g000001

rho GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029669.1
OG0011795
Physical Location & Seq
Reverse (-)
414 .. 2237
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029669.1_g000001.1.cds

Sequence Viewer

Length: 996 bp
atgaaaactgaagcttacaagttattcatgcaggcagaaggaatcttcagaattaatggcgagaacagtcaggaagagtacgtcagggaccaattaaacaagggaataataccagagggtgttgacatgcactgtttagcaggtcttattaaggcttggtttagagaactcccaactgctgtattggactctctctcaccggagcaggtaatgcagtcgcagacagaagaggagtgtgctcaacttgttaggctccttccgccaacagaagctgcattattggattgggcagtaaacctaatggccgatgttgcacagatggaacacctgaacaagatgaatgcacgcaacattgccatggtctttgcacccaacatgactcaaatggtagatcctttgactgcattgatgtatgcagtccaagtgatgaatttcctcaagactcttatagtcaagacactaagagagagagaagagtctatggtggaaacagctcctgtcccacgccttgagccttctgatgaggatgagcaccaaagcacttttcaaccatatctcgaagagactaataaggaggctaacaaggaaaatgaagaggagaatgtatttgttgccgaagaaccggctttacagagctcccctcgcactttacaagatgaacctacagctgaaagtggatcccagaatttcctctcttctatcaaatatatgattcccggaggaaattggtctgtagttgataattgtccttgtgaggttgtatcccaagtcagctctttaacaaatgggctccaagaggatggcataacaggtcagggtagagaggctcagacaaacgtttggaagagtcaaccaagcgtttcaaatttgaagaagggatcaaaggtcactgagcagctaatggttcaaattgtcgggcctggagacaagagcaagagaactgggattcttagccgcataaattcgaggacagatatcgctgaaggttggcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD RhoGAP

Protein Analysis

331

Amino Acids

37.02

Weight (kDa)

4.67

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011795)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11490
fragaria_vesca FvH4_6g19150
malus_domestica MD12G1027300.v1.1 MD14G1027500.v1.1
prunus_persica Prupe.7G104200_v2.0.a1
pyrus_communis pycom12g02620 pycom14g02620
rosa_chinensis RchiOBHm_Chr3g0474261
rosa_laevigata RLG00000023935
rosa_multiflora Rmu_sc0001803.1_g000025 Rmu_sc0004507.1_g000020 Rmu_sc0029669.1_g000001
rosa_roxburghii Rroxscaffold_6G00407400
rosa_rugosa Rorug03G0139800
rosa_samantha Rh3AG190400 Rh3BG219600 Rh3CG214800 Rh3DG215100
rosa_wichuraiana Rw3G017370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 131, 196
AciI CCGC 2 cut(s) 260, 955
AclI AACGTT 1 cut(s) 837
AclWI GGATC 4 cut(s) 386, 672, 685, 886
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 4 cut(s) 430, 685, 865, 961
AcuI CTGAAG 2 cut(s) 30, 31
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 4 cut(s) 548, 864, 871, 908
AjnI CCWGG 1 cut(s) 919
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AluBI AGCT 7 cut(s) 14, 272, 494, 636, 668, 774, 898
AluI AGCT 7 cut(s) 14, 272, 494, 636, 668, 774, 898
Alw21I GWGCWC 3 cut(s) 241, 534, 638
Alw26I GTCTC 2 cut(s) 557, 918
AlwI GGATC 4 cut(s) 386, 672, 685, 886
AlwNI CAGNNNCTG 2 cut(s) 272, 497
AoxI GGCC 2 cut(s) 303, 917
ApeKI GCWGC 2 cut(s) 272, 895
ApoI RAATTY 4 cut(s) 430, 685, 865, 961
AseI ATTAAT 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 88, 917
AsuC2I CCSGG 1 cut(s) 717
AsuHPI GGTGA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 88
BamHI GGATCC 1 cut(s) 677
BanII GRGCYC 2 cut(s) 638, 792
Bbv12I GWGCWC 3 cut(s) 241, 534, 638
BbvI GCAGC 2 cut(s) 259, 907
BccI CCATC 2 cut(s) 313, 794
BciT130I CCWGG 1 cut(s) 921
BciVI GTATCC 1 cut(s) 772
BcnI CCSGG 1 cut(s) 717
BcoDI GTCTC 2 cut(s) 557, 918
BfmI CTRYAG 2 cut(s) 663, 732
BfuAI ACCTGC 2 cut(s) 131, 196
BfuI GTATCC 1 cut(s) 772
BisI GCNGC 3 cut(s) 273, 896, 955
BlsI GCNGC 3 cut(s) 274, 897, 956
Bme1390I CCNGG 2 cut(s) 717, 921
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 88, 917
BmiI GGNNCC 4 cut(s) 89, 254, 679, 791
BmrFI CCNGG 2 cut(s) 717, 921
BmrI ACTGGG 1 cut(s) 951
BmuI ACTGGG 1 cut(s) 951
BplI GAGNNNNNCTC 2 cut(s) 625, 657
BpmI CTGGAG 1 cut(s) 942
BpuEI CTTGAG 2 cut(s) 422, 530
BpuMI CCSGG 1 cut(s) 717
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 622
Bse1I ACTGG 1 cut(s) 946
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 921
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 2 cut(s) 532, 805
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 842, 882
BseNI ACTGG 1 cut(s) 946
BseRI GAGGAG 2 cut(s) 245, 611
BseXI GCAGC 2 cut(s) 259, 907
BshFI GGCC 2 cut(s) 305, 919
BsiHKAI GWGCWC 3 cut(s) 241, 534, 638
BsiSI CCGG 3 cut(s) 200, 623, 717
BslFI GGGAC 2 cut(s) 101, 485
BsmAI GTCTC 2 cut(s) 557, 918
BsmFI GGGAC 2 cut(s) 101, 485
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 2 cut(s) 305, 919
Bsp1286I GDGCHC 4 cut(s) 241, 534, 638, 792
Bsp143I GATC 3 cut(s) 391, 677, 878
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 2 cut(s) 260, 955
BspANI GGCC 2 cut(s) 305, 919
BspCNI CTCAG 2 cut(s) 841, 883
BspLI GGNNCC 4 cut(s) 89, 254, 679, 791
BspMI ACCTGC 2 cut(s) 131, 196
BspPI GGATC 4 cut(s) 386, 672, 685, 886
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 622
BsrI ACTGG 1 cut(s) 946
BssAI RCCGGY 1 cut(s) 622
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 3 cut(s) 391, 677, 878
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 921
Bst4CI ACNGT 2 cut(s) 68, 134
Bst6I CTCTTC 7 cut(s) 69, 222, 468, 555, 588, 700, 839
BstAPI GCANNNNNTGC 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 33, 346
BstDEI CTNAG 4 cut(s) 461, 828, 891, 950
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 532, 805
BstKTI GATC 3 cut(s) 394, 680, 881
BstMAI GTCTC 2 cut(s) 557, 918
BstMBI GATC 3 cut(s) 391, 677, 878
BstMWI GCNNNNNNNGC 4 cut(s) 211, 259, 311, 642
BstNI CCWGG 1 cut(s) 921
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 715, 919
BstSFI CTRYAG 2 cut(s) 663, 732
BstV1I GCAGC 2 cut(s) 259, 907
BstX2I RGATCY 2 cut(s) 391, 677
BstXI CCANNNNNNTGG 1 cut(s) 800
BstYI RGATCY 2 cut(s) 391, 677
BsuI GTATCC 1 cut(s) 772
BsuRI GGCC 2 cut(s) 305, 919
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 2 cut(s) 532, 805
BtsIMutI CAGTG 2 cut(s) 130, 888
BveI ACCTGC 2 cut(s) 131, 196
Cac8I GCNNGC 2 cut(s) 33, 346
CaiI CAGNNNCTG 2 cut(s) 272, 497
Cfr10I RCCGGY 1 cut(s) 622
Cfr13I GGNCC 2 cut(s) 88, 917
Csp6I GTAC 1 cut(s) 79
CviAII CATG 4 cut(s) 28, 127, 358, 376
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 4 cut(s) 461, 828, 891, 950
DpnI GATC 3 cut(s) 393, 679, 880
DpnII GATC 3 cut(s) 391, 677, 878
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 7 cut(s) 69, 222, 468, 555, 588, 700, 839
EarI CTCTTC 7 cut(s) 69, 222, 468, 555, 588, 700, 839
EciI GGCGGA 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 636
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 2 cut(s) 638, 792
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 636
Eco57I CTGAAG 2 cut(s) 30, 31
EcoICRI GAGCTC 1 cut(s) 636
EcoRII CCWGG 1 cut(s) 919
EcoRV GATATC 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 2 cut(s) 638, 792
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 4 cut(s) 31, 130, 361, 379
FaqI GGGAC 2 cut(s) 101, 485
FatI CATG 4 cut(s) 27, 126, 357, 375
Fnu4HI GCNGC 3 cut(s) 273, 896, 955
FokI GGATG 2 cut(s) 539, 812
FriOI GRGCYC 2 cut(s) 638, 792
Fsp4HI GCNGC 3 cut(s) 273, 896, 955
GluI GCNGC 3 cut(s) 273, 896, 955
GsuI CTGGAG 1 cut(s) 942
HaeIII GGCC 2 cut(s) 305, 919
HapII CCGG 3 cut(s) 200, 623, 717
Hin1II CATG 4 cut(s) 31, 130, 361, 379
HincII GTYRAC 2 cut(s) 124, 851
HindII GTYRAC 2 cut(s) 124, 851
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 8 cut(s) 42, 188, 379, 442, 476, 712, 847, 946
HpaII CCGG 3 cut(s) 200, 623, 717
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 3 cut(s) 124, 295, 851
Hpy188I TCNGA 3 cut(s) 50, 520, 831
Hpy188III TCNNGA 4 cut(s) 71, 439, 454, 557
Hpy8I GTNNAC 3 cut(s) 124, 295, 851
HpyAV CCTTC 5 cut(s) 32, 266, 525, 868, 977
HpyCH4III ACNGT 2 cut(s) 68, 134
HpyCH4IV ACGT 2 cut(s) 81, 837
HpyCH4V TGCA 9 cut(s) 31, 130, 214, 275, 314, 344, 368, 404, 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 211, 259, 311, 642
HpyF3I CTNAG 4 cut(s) 461, 828, 891, 950
HpySE526I ACGT 2 cut(s) 81, 837
Hsp92II CATG 4 cut(s) 31, 130, 361, 379
Kzo9I GATC 3 cut(s) 391, 677, 878
LmnI GCTCC 5 cut(s) 202, 258, 499, 641, 795
Lsp1109I GCAGC 2 cut(s) 259, 907
MaeII ACGT 2 cut(s) 81, 837
MaeIII GTNAC 1 cut(s) 886
MalI GATC 3 cut(s) 393, 679, 880
MboI GATC 3 cut(s) 391, 677, 878
MflI RGATCY 2 cut(s) 391, 677
MhlI GDGCHC 4 cut(s) 241, 534, 638, 792
MluCI AATT 9 cut(s) 51, 92, 430, 685, 724, 742, 865, 909, 961
MlyI GAGTC 5 cut(s) 182, 373, 436, 485, 856
MseI TTAA 4 cut(s) 54, 95, 150, 779
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 3 cut(s) 200, 623, 717
MspR9I CCNGG 2 cut(s) 717, 921
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 1 cut(s) 921
MwoI GCNNNNNNNGC 4 cut(s) 211, 259, 311, 642
NciI CCSGG 1 cut(s) 717
NcoI CCATGG 1 cut(s) 357
NdeII GATC 3 cut(s) 391, 677, 878
NlaIII CATG 4 cut(s) 31, 130, 361, 379
NlaIV GGNNCC 4 cut(s) 89, 254, 679, 791
NmuCI GTSAC 1 cut(s) 886
NspI RCATGY 1 cut(s) 130
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 3 cut(s) 42, 712, 946
PfoI TCCNGGA 1 cut(s) 715
PkrI GCNGC 3 cut(s) 274, 897, 956
PleI GAGTC 5 cut(s) 182, 373, 436, 484, 855
PpsI GAGTC 5 cut(s) 182, 373, 436, 484, 855
PshBI ATTAAT 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 638
Psp1406I AACGTT 1 cut(s) 837
Psp6I CCWGG 1 cut(s) 919
PspGI CCWGG 1 cut(s) 919
PspN4I GGNNCC 4 cut(s) 89, 254, 679, 791
PspPI GGNCC 2 cut(s) 88, 917
PsrI GAACNNNNNNTAC 2 cut(s) 612, 644
PstNI CAGNNNCTG 2 cut(s) 272, 497
PsuI RGATCY 2 cut(s) 391, 677
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 356
SacI GAGCTC 1 cut(s) 638
SaqAI TTAA 4 cut(s) 54, 95, 150, 779
SatI GCNGC 3 cut(s) 273, 896, 955
Sau3AI GATC 3 cut(s) 391, 677, 878
Sau96I GGNCC 2 cut(s) 88, 917
SchI GAGTC 5 cut(s) 182, 373, 436, 485, 856
ScrFI CCNGG 2 cut(s) 717, 921
SduI GDGCHC 4 cut(s) 241, 534, 638, 792
SfcI CTRYAG 2 cut(s) 663, 732
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 2 cut(s) 437, 509
SmoI CTYRAG 2 cut(s) 437, 509
Sse9I AATT 9 cut(s) 51, 92, 430, 685, 724, 742, 865, 909, 961
SsiI CCGC 2 cut(s) 260, 955
SstI GAGCTC 1 cut(s) 638
StyD4I CCNGG 2 cut(s) 715, 919
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 68, 134
TaiI ACGT 2 cut(s) 84, 840
TaqI TCGA 2 cut(s) 558, 965
TasI AATT 9 cut(s) 51, 92, 430, 685, 724, 742, 865, 909, 961
TauI GCSGC 1 cut(s) 957
TfiI GAWTC 3 cut(s) 42, 712, 946
Tru1I TTAA 4 cut(s) 54, 95, 150, 779
Tru9I TTAA 4 cut(s) 54, 95, 150, 779
TscAI CASTG 2 cut(s) 137, 895
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 2 cut(s) 272, 895
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 6 cut(s) 16, 17, 353, 443, 606, 672
TspRI CASTG 2 cut(s) 137, 895
VpaK11BI GGWCC 1 cut(s) 88
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 4 cut(s) 430, 685, 865, 961
XceI RCATGY 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.