Rmu_sc0004507.1_g000020

rho GTPase-activating protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004507.1
Physical Location & Seq
Forward (+)
88292 .. 92003
3712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004507.1_g000020.1.cds

Sequence Viewer

Length: 1509 bp
atgactgaggtactccaatccccatctcacttcccttcaccttcaagctcttccccacccacaagtaatgatggcccatacccacatgcccttattaccagtccttccgtaggtgagagcctgcaagcccatttgagttcagagggggaagagcaagaagaagaagagaggaagaggagcgagagagacagggagggagatcagctgtcgctcttgacgcttcttgtggctgcttttaggaaatctttgattgggtgcagtactactgggactggggccgagagagctaagctttccaacatggagattgggtggccttccaatgtgaggcatgttgcccatgtcacctttgatcggttcaatggctttctgggtttgcccgttgagcttgagcctgaggttcccaggagagctcctagtgctagtgcgaatgttttcggggtttccacagagtccatgcagctatcatttgatgctagaggaaacagtgtccccacaatactcatcttgatgcagagacatttatatgcgcaggggggtctgcaggcagaaggaatcttcagaattaatggcgagaacagtcaggaagagtacgtcagggaccaattaaacaagggaataataccagagggtgttgacatgcactgtttagcaggtcttattaaggcttggtttagagaactcccaactgctgtattggactctctctcaccggagcaggtaatgcagtcgcagacagaagaggagtgtgctcaacttgttaggctccttccgccaacagaagctgcattattggattgggcagtaaacctaatggccgatgttgcacagatggaacacctgaacaagatgaatgcacgcaacattgccatggtctttgcaccaaacatgactcaaatggtagatcctttgactgcattgatgtatgcagtccaagtgatgaatttcctcaagactcttatagtcaagacactaagagagagagaagagtctatggtggaaacagctcctgtcccacgccttgagccttctgatgaggatgagcaccaaagcacttttcaaccatatctcgaagagactaataaggaggctaacaaggaaaatgaagaggagaatgtatttgttgccgaagaaccggctttacagagctcccctcgcactttacaagatgaacctacagctgaaagtggatcccagaatttcctctcttctatcaaatatatgattcccggaggaaattggtctgtagttgataattgtccttgtgaggttgtatcccaagtcagctctttaacaaatgggctccaagaggatggcataacaggtcagggtagagaggctcagacaaacgtttggaagagtcaaccaagcgtttcaaatttgaagaagggatcaaaggtcactgagcagctaatggttcaaattgtcgggcctggagacaagagcaagagaactgggattcttagccgcataaattcgaggacagatatcgctgaaggttggcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

502

Amino Acids

55.39

Weight (kDa)

4.81

Isoelectric Point (pI)

60.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011795)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 531
Acc36I ACCTGC 2 cut(s) 644, 709
AciI CCGC 2 cut(s) 773, 1468
AclI AACGTT 1 cut(s) 1350
AclWI GGATC 4 cut(s) 899, 1185, 1198, 1399
AcoI YGGCCR 1 cut(s) 816
AcsI RAATTY 4 cut(s) 943, 1198, 1378, 1474
AcuI CTGAAG 1 cut(s) 544
AfaI GTAC 3 cut(s) 12, 262, 593
AfiI CCNNNNNNNGG 3 cut(s) 110, 327, 354
AgsI TTSAA 6 cut(s) 45, 361, 1061, 1377, 1384, 1421
AjnI CCWGG 2 cut(s) 404, 1432
AjuI GAANNNNNNNTTGG 2 cut(s) 1041, 1073
Alw21I GWGCWC 4 cut(s) 415, 754, 1047, 1151
Alw26I GTCTC 4 cut(s) 180, 511, 1070, 1431
AlwI GGATC 4 cut(s) 899, 1185, 1198, 1399
AlwNI CAGNNNCTG 2 cut(s) 785, 1010
AoxI GGCC 5 cut(s) 73, 276, 314, 816, 1430
ApeKI GCWGC 4 cut(s) 230, 460, 785, 1408
ApoI RAATTY 4 cut(s) 943, 1198, 1378, 1474
AseI ATTAAT 1 cut(s) 567
Asp700I GAANNNNTTC 1 cut(s) 434
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 4 cut(s) 74, 276, 601, 1430
AsuC2I CCSGG 1 cut(s) 1230
AsuHPI GGTGA 4 cut(s) 30, 125, 337, 702
AvaII GGWCC 1 cut(s) 601
AxyI CCTNAGG 1 cut(s) 396
BamHI GGATCC 1 cut(s) 1190
BanII GRGCYC 3 cut(s) 415, 1151, 1305
Bbv12I GWGCWC 4 cut(s) 415, 754, 1047, 1151
BbvI GCAGC 4 cut(s) 217, 472, 772, 1420
BccI CCATC 4 cut(s) 31, 65, 826, 1307
BciT130I CCWGG 2 cut(s) 406, 1434
BciVI GTATCC 1 cut(s) 1285
BcnI CCSGG 1 cut(s) 1230
BcoDI GTCTC 4 cut(s) 180, 511, 1070, 1431
BfaI CTAG 3 cut(s) 417, 423, 477
BfmI CTRYAG 3 cut(s) 542, 1176, 1245
BfuAI ACCTGC 2 cut(s) 644, 709
BfuI GTATCC 1 cut(s) 1285
BisI GCNGC 5 cut(s) 231, 461, 786, 1409, 1468
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 5 cut(s) 232, 462, 787, 1410, 1469
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 3 cut(s) 406, 1230, 1434
Bme18I GGWCC 1 cut(s) 601
BmgT120I GGNCC 4 cut(s) 74, 276, 601, 1430
BmiI GGNNCC 6 cut(s) 277, 402, 602, 767, 1192, 1304
BmrFI CCNGG 3 cut(s) 406, 1230, 1434
BmrI ACTGGG 3 cut(s) 276, 282, 1464
BmsI GCATC 2 cut(s) 463, 501
BmuI ACTGGG 3 cut(s) 276, 282, 1464
BplI GAGNNNNNCTC 2 cut(s) 1138, 1170
BpmI CTGGAG 1 cut(s) 1455
Bpu1102I GCTNAGC 1 cut(s) 288
BpuEI CTTGAG 3 cut(s) 410, 935, 1043
BpuMI CCSGG 1 cut(s) 1230
BsaJI CCNNGG 2 cut(s) 404, 870
BsaWI WCCGGW 1 cut(s) 712
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 327, 354
Bse118I RCCGGY 1 cut(s) 1135
Bse1I ACTGG 4 cut(s) 99, 271, 277, 1459
Bse21I CCTNAGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 864
BseBI CCWGG 2 cut(s) 406, 1434
BseDI CCNNGG 2 cut(s) 404, 870
BseGI GGATG 2 cut(s) 1045, 1318
BseLI CCNNNNNNNGG 3 cut(s) 110, 327, 354
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 3 cut(s) 387, 1355, 1395
BseNI ACTGG 4 cut(s) 99, 271, 277, 1459
BseRI GAGGAG 3 cut(s) 190, 758, 1124
BseXI GCAGC 4 cut(s) 217, 472, 772, 1420
BsgI GTGCAG 1 cut(s) 277
BshFI GGCC 5 cut(s) 75, 278, 316, 818, 1432
BsiHKAI GWGCWC 4 cut(s) 415, 754, 1047, 1151
BsiSI CCGG 3 cut(s) 713, 1136, 1230
BslFI GGGAC 4 cut(s) 283, 476, 614, 998
BslI CCNNNNNNNGG 3 cut(s) 110, 327, 354
BsmAI GTCTC 4 cut(s) 180, 511, 1070, 1431
BsmFI GGGAC 4 cut(s) 283, 476, 614, 998
BsmI GAATGC 1 cut(s) 859
BsnI GGCC 5 cut(s) 75, 278, 316, 818, 1432
Bsp1286I GDGCHC 5 cut(s) 415, 754, 1047, 1151, 1305
Bsp143I GATC 5 cut(s) 199, 352, 904, 1190, 1391
Bsp1720I GCTNAGC 1 cut(s) 288
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 2 cut(s) 773, 1468
BspANI GGCC 5 cut(s) 75, 278, 316, 818, 1432
BspCNI CTCAG 3 cut(s) 388, 1354, 1396
BspLI GGNNCC 6 cut(s) 277, 402, 602, 767, 1192, 1304
BspMAI CTGCAG 1 cut(s) 546
BspMI ACCTGC 2 cut(s) 644, 709
BspPI GGATC 4 cut(s) 899, 1185, 1198, 1399
BspQI GCTCTTC 2 cut(s) 55, 144
BsrDI GCAATG 1 cut(s) 864
BsrFI RCCGGY 1 cut(s) 1135
BsrI ACTGG 4 cut(s) 99, 271, 277, 1459
BssAI RCCGGY 1 cut(s) 1135
BssECI CCNNGG 2 cut(s) 404, 870
BssMI GATC 5 cut(s) 199, 352, 904, 1190, 1391
BssT1I CCWWGG 1 cut(s) 870
Bst2UI CCWGG 2 cut(s) 406, 1434
Bst4CI ACNGT 3 cut(s) 488, 581, 647
BstAPI GCANNNNNTGC 1 cut(s) 724
BstC8I GCNNGC 4 cut(s) 122, 126, 546, 859
BstDEI CTNAG 7 cut(s) 6, 288, 396, 974, 1341, 1404, 1463
BstDSI CCRYGG 1 cut(s) 870
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 1045, 1318
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 5 cut(s) 202, 355, 907, 1193, 1394
BstMAI GTCTC 4 cut(s) 180, 511, 1070, 1431
BstMBI GATC 5 cut(s) 199, 352, 904, 1190, 1391
BstMWI GCNNNNNNNGC 8 cut(s) 217, 284, 385, 419, 724, 772, 824, 1155
BstNI CCWGG 2 cut(s) 406, 1434
BstNSI RCATGY 3 cut(s) 89, 335, 643
BstSCI CCNGG 3 cut(s) 404, 1228, 1432
BstSFI CTRYAG 3 cut(s) 542, 1176, 1245
BstV1I GCAGC 4 cut(s) 217, 472, 772, 1420
BstX2I RGATCY 2 cut(s) 904, 1190
BstXI CCANNNNNNTGG 1 cut(s) 1313
BstYI RGATCY 2 cut(s) 904, 1190
Bsu36I CCTNAGG 1 cut(s) 396
BsuI GTATCC 1 cut(s) 1285
BsuRI GGCC 5 cut(s) 75, 278, 316, 818, 1432
BtgI CCRYGG 1 cut(s) 870
BtsCI GGATG 2 cut(s) 1045, 1318
BtsIMutI CAGTG 3 cut(s) 493, 643, 1401
BveI ACCTGC 2 cut(s) 644, 709
Cac8I GCNNGC 4 cut(s) 122, 126, 546, 859
CaiI CAGNNNCTG 2 cut(s) 785, 1010
CfoI GCGC 1 cut(s) 532
Cfr10I RCCGGY 1 cut(s) 1135
Cfr13I GGNCC 4 cut(s) 74, 276, 601, 1430
CseI GACGC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 11, 261, 592
CviAII CATG 8 cut(s) 86, 301, 332, 341, 457, 640, 871, 889
CviQI GTAC 3 cut(s) 11, 261, 592
DdeI CTNAG 7 cut(s) 6, 288, 396, 974, 1341, 1404, 1463
DpnI GATC 5 cut(s) 201, 354, 906, 1192, 1393
DpnII GATC 5 cut(s) 199, 352, 904, 1190, 1391
EaeI YGGCCR 1 cut(s) 816
EciI GGCGGA 1 cut(s) 762
Ecl136II GAGCTC 2 cut(s) 413, 1149
Eco130I CCWWGG 1 cut(s) 870
Eco24I GRGCYC 3 cut(s) 415, 1151, 1305
Eco32I GATATC 1 cut(s) 1489
Eco47I GGWCC 1 cut(s) 601
Eco53kI GAGCTC 2 cut(s) 413, 1149
Eco57I CTGAAG 1 cut(s) 544
Eco81I CCTNAGG 1 cut(s) 396
EcoICRI GAGCTC 2 cut(s) 413, 1149
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 404, 1432
EcoRV GATATC 1 cut(s) 1489
EcoT14I CCWWGG 1 cut(s) 870
EcoT38I GRGCYC 3 cut(s) 415, 1151, 1305
ErhI CCWWGG 1 cut(s) 870
FaeI CATG 8 cut(s) 89, 304, 335, 344, 460, 643, 874, 892
FaqI GGGAC 4 cut(s) 283, 476, 614, 998
FatI CATG 8 cut(s) 85, 300, 331, 340, 456, 639, 870, 888
Fnu4HI GCNGC 5 cut(s) 231, 461, 786, 1409, 1468
FokI GGATG 2 cut(s) 1052, 1325
FriOI GRGCYC 3 cut(s) 415, 1151, 1305
Fsp4HI GCNGC 5 cut(s) 231, 461, 786, 1409, 1468
FspBI CTAG 3 cut(s) 417, 423, 477
FspI TGCGCA 1 cut(s) 531
GlaI GCGC 1 cut(s) 531
GluI GCNGC 5 cut(s) 231, 461, 786, 1409, 1468
GsuI CTGGAG 1 cut(s) 1455
HaeIII GGCC 5 cut(s) 75, 278, 316, 818, 1432
HapII CCGG 3 cut(s) 713, 1136, 1230
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 532
Hin1II CATG 8 cut(s) 89, 304, 335, 344, 460, 643, 874, 892
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 2 cut(s) 637, 1364
HindII GTYRAC 2 cut(s) 637, 1364
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 9 cut(s) 452, 555, 701, 892, 955, 989, 1225, 1360, 1459
HpaII CCGG 3 cut(s) 713, 1136, 1230
HphI GGTGA 4 cut(s) 30, 125, 337, 702
Hpy166II GTNNAC 3 cut(s) 637, 808, 1364
Hpy188I TCNGA 4 cut(s) 142, 563, 1033, 1344
Hpy188III TCNNGA 6 cut(s) 214, 508, 584, 952, 967, 1070
Hpy8I GTNNAC 3 cut(s) 637, 808, 1364
HpyAV CCTTC 9 cut(s) 45, 51, 114, 327, 545, 779, 1038, 1381, 1490
HpyCH4III ACNGT 3 cut(s) 488, 581, 647
HpyCH4IV ACGT 2 cut(s) 594, 1350
HpyF10VI GCNNNNNNNGC 8 cut(s) 217, 284, 385, 419, 724, 772, 824, 1155
HpyF3I CTNAG 7 cut(s) 6, 288, 396, 974, 1341, 1404, 1463
HpySE526I ACGT 2 cut(s) 594, 1350
Hsp92II CATG 8 cut(s) 89, 304, 335, 344, 460, 643, 874, 892
HspAI GCGC 1 cut(s) 530
Kzo9I GATC 5 cut(s) 199, 352, 904, 1190, 1391
LguI GCTCTTC 2 cut(s) 55, 144
LmnI GCTCC 7 cut(s) 177, 418, 715, 771, 1012, 1154, 1308
Lsp1109I GCAGC 4 cut(s) 217, 472, 772, 1420
LweI GCATC 2 cut(s) 463, 501
MaeI CTAG 3 cut(s) 417, 423, 477
MaeII ACGT 2 cut(s) 594, 1350
MaeIII GTNAC 2 cut(s) 343, 1399
MalI GATC 5 cut(s) 201, 354, 906, 1192, 1393
MboI GATC 5 cut(s) 199, 352, 904, 1190, 1391
MflI RGATCY 2 cut(s) 904, 1190
MhlI GDGCHC 5 cut(s) 415, 754, 1047, 1151, 1305
MluCI AATT 9 cut(s) 564, 605, 943, 1198, 1237, 1255, 1378, 1422, 1474
MlyI GAGTC 6 cut(s) 461, 695, 886, 949, 998, 1369
MmeI TCCRAC 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 4 cut(s) 567, 608, 663, 1292
MslI CAYNNNNRTG 3 cut(s) 509, 525, 869
MspA1I CMGCKG 2 cut(s) 205, 1181
MspI CCGG 3 cut(s) 713, 1136, 1230
MspR9I CCNGG 3 cut(s) 406, 1230, 1434
Mva1269I GAATGC 1 cut(s) 859
MvaI CCWGG 2 cut(s) 406, 1434
MwoI GCNNNNNNNGC 8 cut(s) 217, 284, 385, 419, 724, 772, 824, 1155
NciI CCSGG 1 cut(s) 1230
NcoI CCATGG 1 cut(s) 870
NdeII GATC 5 cut(s) 199, 352, 904, 1190, 1391
NlaIII CATG 8 cut(s) 89, 304, 335, 344, 460, 643, 874, 892
NlaIV GGNNCC 6 cut(s) 277, 402, 602, 767, 1192, 1304
NmeAIII GCCGAG 1 cut(s) 304
NmuCI GTSAC 2 cut(s) 343, 1399
NsbI TGCGCA 1 cut(s) 531
NspI RCATGY 3 cut(s) 89, 335, 643
PciSI GCTCTTC 2 cut(s) 55, 144
PctI GAATGC 1 cut(s) 859
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 3 cut(s) 555, 1225, 1459
PfoI TCCNGGA 1 cut(s) 1228
PkrI GCNGC 5 cut(s) 232, 462, 787, 1410, 1469
PleI GAGTC 6 cut(s) 460, 695, 886, 949, 997, 1368
PpsI GAGTC 6 cut(s) 460, 695, 886, 949, 997, 1368
PshBI ATTAAT 1 cut(s) 567
Psp124BI GAGCTC 2 cut(s) 415, 1151
Psp1406I AACGTT 1 cut(s) 1350
Psp6I CCWGG 2 cut(s) 404, 1432
PspGI CCWGG 2 cut(s) 404, 1432
PspN4I GGNNCC 6 cut(s) 277, 402, 602, 767, 1192, 1304
PspPI GGNCC 4 cut(s) 74, 276, 601, 1430
PsrI GAACNNNNNNTAC 2 cut(s) 1125, 1157
PstI CTGCAG 1 cut(s) 546
PstNI CAGNNNCTG 2 cut(s) 785, 1010
PsuI RGATCY 2 cut(s) 904, 1190
PvuII CAGCTG 2 cut(s) 205, 1181
RsaI GTAC 3 cut(s) 12, 262, 593
RsaNI GTAC 3 cut(s) 11, 261, 592
RseI CAYNNNNRTG 3 cut(s) 509, 525, 869
SacI GAGCTC 2 cut(s) 415, 1151
SapI GCTCTTC 2 cut(s) 55, 144
SaqAI TTAA 4 cut(s) 567, 608, 663, 1292
SatI GCNGC 5 cut(s) 231, 461, 786, 1409, 1468
Sau3AI GATC 5 cut(s) 199, 352, 904, 1190, 1391
Sau96I GGNCC 4 cut(s) 74, 276, 601, 1430
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 6 cut(s) 461, 695, 886, 949, 998, 1369
ScrFI CCNGG 3 cut(s) 406, 1230, 1434
SduI GDGCHC 5 cut(s) 415, 754, 1047, 1151, 1305
SfaNI GCATC 2 cut(s) 463, 501
SfcI CTRYAG 3 cut(s) 542, 1176, 1245
SinI GGWCC 1 cut(s) 601
SmiMI CAYNNNNRTG 3 cut(s) 509, 525, 869
SmlI CTYRAG 3 cut(s) 389, 950, 1022
SmoI CTYRAG 3 cut(s) 389, 950, 1022
Sse9I AATT 9 cut(s) 564, 605, 943, 1198, 1237, 1255, 1378, 1422, 1474
SsiI CCGC 2 cut(s) 773, 1468
SspMI CTAG 3 cut(s) 417, 423, 477
SstI GAGCTC 2 cut(s) 415, 1151
StyD4I CCNGG 3 cut(s) 404, 1228, 1432
StyI CCWWGG 1 cut(s) 870
TaaI ACNGT 3 cut(s) 488, 581, 647
TaiI ACGT 2 cut(s) 597, 1353
TaqI TCGA 2 cut(s) 1071, 1478
TasI AATT 9 cut(s) 564, 605, 943, 1198, 1237, 1255, 1378, 1422, 1474
TatI WGTACW 1 cut(s) 260
TauI GCSGC 1 cut(s) 1470
TfiI GAWTC 3 cut(s) 555, 1225, 1459
Tru1I TTAA 4 cut(s) 567, 608, 663, 1292
Tru9I TTAA 4 cut(s) 567, 608, 663, 1292
TscAI CASTG 3 cut(s) 493, 650, 1408
TseFI GTSAC 2 cut(s) 343, 1399
TseI GCWGC 4 cut(s) 230, 460, 785, 1408
Tsp45I GTSAC 2 cut(s) 343, 1399
TspDTI ATGAA 4 cut(s) 866, 956, 1119, 1185
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 3 cut(s) 493, 650, 1408
VpaK11BI GGWCC 1 cut(s) 601
VspI ATTAAT 1 cut(s) 567
XagI CCTNNNNNAGG 1 cut(s) 108
XapI RAATTY 4 cut(s) 943, 1198, 1378, 1474
XceI RCATGY 3 cut(s) 89, 335, 643
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 3 cut(s) 417, 423, 477
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.