Rw3G017370

rho GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011795
Physical Location & Seq
Reverse (-)
18755869 .. 18760302
4434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017370.1

Sequence Viewer

Length: 1209 bp
ATGGAGATTGGGTGGCCTTCCAATGTGAGGCATGTTGCCCATGTCACCTTTGATCGGTTCAATGGCTTTCTGGGTTTGCCCGTTGAGCTTGAGCCTGAGGTTCCCAGGAGAGCTCCCAGTGCTAGTGCGAATGTTTTCGGGGTTTCCACAGAGTCCATGCAGCTATCATTTGATGCTAGAGGAAACAGTGTCCCCACAATACTCATCTTGATGCAGAGACATTTATATGCGCAGGGGGGTCTGCAGGCAGAAGGAATCTTCAGAATTAATGGCGAGAACAGTCAGGAAGAGTACGTCAGGGACCAATTAAACAAGGGAATAATACCAGAGGGTGTTGACATGCACTGTTTAGCAGGTCTTATTAAGGCTTGGTTTAGAGAACTCCCAACTGCTGTATTGGACTCTCTCTCACCGGAGCAGGTAATGCAGTCGCAGACAGAAGAGGAGTGTGCTCAACTTGTTAGGCTCCTTCCGCCAACAGAAGCTGCATTATTGGATTGGGCAGTAAACCTAATGGCCGATGTTGCACAGATGGAACACCTGAACAAGATGAATGCACGCAACATTGCCATGGTCTTTGCACCAAACATGACTCAAATGGTAGATCCTTTGACTGCATTGATGTATGCAGTCCAAGTGATGAATTTCCTCAAGACTCTTATAGTCAAGACACTAAGAGAGAGAGAAGAGTCTATGGTGGAAACAGCTCCTGTCCCACGCCTTGAGCCTTCTGATGAGGATGAGCACCAAAGCACTTTTCAACCATATCTCGAAGAGACTAATAAGGAGGCTAACAAGGAAAATGAAGAGGAGAATGTATTTGTTGCCGAAGAACCGGCTTTACAGAGCCCCCCTTGCACTTTACAAGATGAACCTACAGCTGAAAGTGGATCCCAGAATTTCCTCTCTTCTATCAAATATATGATTCCCGGAGGAAATTGGTCTGTAGTTGATAATTGTCCTTGTGAGGTTGTATCCCAAGTCAGCTCTTTAACAAATGGGCTCCAAGAGGATGGCATAACAGGTCAGGGTAGAGAGGCTCAGACAAATGTTTGGAAGAGTCAACCAAGCGTTTCAAATCTGAAGAAGGGATCAAAGGTCACTGAGCAGCTAATGGTTCAAATTGTCGGGCCTGGAGACAAGAGCAAGAGAACTGGGATTCTTAGCCGCATAAATTCGAGGACAGATATCGCTGAAGGTTGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD RhoGAP

Protein Analysis

402

Amino Acids

44.64

Weight (kDa)

4.73

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RhoGAP PF00620 65 - 198 1e-22 RhoGAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011795)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11490
fragaria_vesca FvH4_6g19150
malus_domestica MD12G1027300.v1.1 MD14G1027500.v1.1
prunus_persica Prupe.7G104200_v2.0.a1
pyrus_communis pycom12g02620 pycom14g02620
rosa_chinensis RchiOBHm_Chr3g0474261
rosa_laevigata RLG00000023935
rosa_multiflora Rmu_sc0001803.1_g000025 Rmu_sc0004507.1_g000020 Rmu_sc0029669.1_g000001
rosa_roxburghii Rroxscaffold_6G00407400
rosa_rugosa Rorug03G0139800
rosa_samantha Rh3AG190400 Rh3BG219600 Rh3CG214800 Rh3DG215100
rosa_wichuraiana Rw3G017370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 231
Acc36I ACCTGC 2 cut(s) 344, 409
AciI CCGC 2 cut(s) 473, 1168
AclWI GGATC 4 cut(s) 599, 885, 898, 1099
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 3 cut(s) 643, 898, 1174
AcuI CTGAAG 2 cut(s) 244, 1103
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 27, 54
AgsI TTSAA 4 cut(s) 61, 761, 1077, 1121
AjnI CCWGG 2 cut(s) 104, 1132
AjuI GAANNNNNNNTTGG 2 cut(s) 741, 773
AluBI AGCT 8 cut(s) 88, 113, 163, 485, 707, 881, 987, 1111
AluI AGCT 8 cut(s) 88, 113, 163, 485, 707, 881, 987, 1111
Alw21I GWGCWC 3 cut(s) 115, 454, 747
Alw26I GTCTC 3 cut(s) 211, 770, 1131
AlwI GGATC 4 cut(s) 599, 885, 898, 1099
AlwNI CAGNNNCTG 2 cut(s) 485, 710
AoxI GGCC 3 cut(s) 14, 516, 1130
ApeKI GCWGC 3 cut(s) 160, 485, 1108
ApoI RAATTY 3 cut(s) 643, 898, 1174
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 301, 1130
AsuC2I CCSGG 1 cut(s) 930
AsuHPI GGTGA 2 cut(s) 37, 402
AvaII GGWCC 1 cut(s) 301
AxyI CCTNAGG 1 cut(s) 96
BamHI GGATCC 1 cut(s) 890
BanII GRGCYC 3 cut(s) 115, 851, 1005
Bbv12I GWGCWC 3 cut(s) 115, 454, 747
BbvI GCAGC 3 cut(s) 172, 472, 1120
BccI CCATC 2 cut(s) 526, 1007
BciT130I CCWGG 2 cut(s) 106, 1134
BciVI GTATCC 1 cut(s) 985
BcnI CCSGG 1 cut(s) 930
BcoDI GTCTC 3 cut(s) 211, 770, 1131
BfaI CTAG 2 cut(s) 123, 177
BfmI CTRYAG 3 cut(s) 242, 876, 945
BfuAI ACCTGC 2 cut(s) 344, 409
BfuI GTATCC 1 cut(s) 985
BisI GCNGC 4 cut(s) 161, 486, 1109, 1168
BlsI GCNGC 4 cut(s) 162, 487, 1110, 1169
Bme1390I CCNGG 3 cut(s) 106, 930, 1134
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 301, 1130
BmiI GGNNCC 5 cut(s) 102, 302, 467, 892, 1004
BmrFI CCNGG 3 cut(s) 106, 930, 1134
BmrI ACTGGG 2 cut(s) 111, 1164
BmsI GCATC 2 cut(s) 163, 201
BmuI ACTGGG 2 cut(s) 111, 1164
BpmI CTGGAG 1 cut(s) 1155
BpuEI CTTGAG 3 cut(s) 110, 635, 743
BpuMI CCSGG 1 cut(s) 930
BsaJI CCNNGG 2 cut(s) 104, 570
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 54
Bse118I RCCGGY 1 cut(s) 835
Bse1I ACTGG 2 cut(s) 117, 1159
Bse21I CCTNAGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 2 cut(s) 106, 1134
BseDI CCNNGG 2 cut(s) 104, 570
BseGI GGATG 2 cut(s) 745, 1018
BseLI CCNNNNNNNGG 2 cut(s) 27, 54
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 3 cut(s) 87, 1055, 1095
BseNI ACTGG 2 cut(s) 117, 1159
BseRI GAGGAG 2 cut(s) 458, 824
BseXI GCAGC 3 cut(s) 172, 472, 1120
BshFI GGCC 3 cut(s) 16, 518, 1132
BsiHKAI GWGCWC 3 cut(s) 115, 454, 747
BsiSI CCGG 3 cut(s) 413, 836, 930
BslFI GGGAC 3 cut(s) 176, 314, 698
BslI CCNNNNNNNGG 2 cut(s) 27, 54
BsmAI GTCTC 3 cut(s) 211, 770, 1131
BsmFI GGGAC 3 cut(s) 176, 314, 698
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 3 cut(s) 16, 518, 1132
Bsp1286I GDGCHC 5 cut(s) 115, 454, 747, 851, 1005
Bsp143I GATC 4 cut(s) 52, 604, 890, 1091
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 2 cut(s) 473, 1168
BspANI GGCC 3 cut(s) 16, 518, 1132
BspCNI CTCAG 3 cut(s) 88, 1054, 1096
BspLI GGNNCC 5 cut(s) 102, 302, 467, 892, 1004
BspMAI CTGCAG 1 cut(s) 246
BspMI ACCTGC 2 cut(s) 344, 409
BspPI GGATC 4 cut(s) 599, 885, 898, 1099
BsrDI GCAATG 1 cut(s) 564
BsrFI RCCGGY 1 cut(s) 835
BsrI ACTGG 2 cut(s) 117, 1159
BssAI RCCGGY 1 cut(s) 835
BssECI CCNNGG 2 cut(s) 104, 570
BssMI GATC 4 cut(s) 52, 604, 890, 1091
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 2 cut(s) 106, 1134
Bst4CI ACNGT 3 cut(s) 188, 281, 347
Bst6I CTCTTC 7 cut(s) 282, 435, 681, 768, 801, 913, 1052
BstAPI GCANNNNNTGC 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 246, 559
BstDEI CTNAG 5 cut(s) 96, 674, 1041, 1104, 1163
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 2 cut(s) 745, 1018
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 4 cut(s) 55, 607, 893, 1094
BstMAI GTCTC 3 cut(s) 211, 770, 1131
BstMBI GATC 4 cut(s) 52, 604, 890, 1091
BstMWI GCNNNNNNNGC 6 cut(s) 85, 119, 424, 472, 524, 855
BstNI CCWGG 2 cut(s) 106, 1134
BstNSI RCATGY 2 cut(s) 35, 343
BstSCI CCNGG 3 cut(s) 104, 928, 1132
BstSFI CTRYAG 3 cut(s) 242, 876, 945
BstV1I GCAGC 3 cut(s) 172, 472, 1120
BstX2I RGATCY 2 cut(s) 604, 890
BstXI CCANNNNNNTGG 1 cut(s) 1013
BstYI RGATCY 2 cut(s) 604, 890
Bsu36I CCTNAGG 1 cut(s) 96
BsuI GTATCC 1 cut(s) 985
BsuRI GGCC 3 cut(s) 16, 518, 1132
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 2 cut(s) 745, 1018
BtsIMutI CAGTG 4 cut(s) 124, 193, 343, 1101
BveI ACCTGC 2 cut(s) 344, 409
Cac8I GCNNGC 2 cut(s) 246, 559
CaiI CAGNNNCTG 2 cut(s) 485, 710
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 835
Cfr13I GGNCC 2 cut(s) 301, 1130
Csp6I GTAC 1 cut(s) 292
CviAII CATG 6 cut(s) 32, 41, 157, 340, 571, 589
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 5 cut(s) 96, 674, 1041, 1104, 1163
DpnI GATC 4 cut(s) 54, 606, 892, 1093
DpnII GATC 4 cut(s) 52, 604, 890, 1091
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 7 cut(s) 282, 435, 681, 768, 801, 913, 1052
EarI CTCTTC 7 cut(s) 282, 435, 681, 768, 801, 913, 1052
EciI GGCGGA 1 cut(s) 462
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 570
Eco24I GRGCYC 3 cut(s) 115, 851, 1005
Eco32I GATATC 1 cut(s) 1189
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 244, 1103
Eco81I CCTNAGG 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 104, 1132
EcoRV GATATC 1 cut(s) 1189
EcoT14I CCWWGG 1 cut(s) 570
EcoT38I GRGCYC 3 cut(s) 115, 851, 1005
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 6 cut(s) 35, 44, 160, 343, 574, 592
FaqI GGGAC 3 cut(s) 176, 314, 698
FatI CATG 6 cut(s) 31, 40, 156, 339, 570, 588
Fnu4HI GCNGC 4 cut(s) 161, 486, 1109, 1168
FokI GGATG 2 cut(s) 752, 1025
FriOI GRGCYC 3 cut(s) 115, 851, 1005
Fsp4HI GCNGC 4 cut(s) 161, 486, 1109, 1168
FspBI CTAG 2 cut(s) 123, 177
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 1 cut(s) 231
GluI GCNGC 4 cut(s) 161, 486, 1109, 1168
GsuI CTGGAG 1 cut(s) 1155
HaeIII GGCC 3 cut(s) 16, 518, 1132
HapII CCGG 3 cut(s) 413, 836, 930
HhaI GCGC 1 cut(s) 232
Hin1II CATG 6 cut(s) 35, 44, 160, 343, 574, 592
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 2 cut(s) 337, 1064
HindII GTYRAC 2 cut(s) 337, 1064
HinfI GANTC 9 cut(s) 152, 255, 401, 592, 655, 689, 925, 1060, 1159
HpaII CCGG 3 cut(s) 413, 836, 930
HphI GGTGA 2 cut(s) 37, 402
Hpy166II GTNNAC 3 cut(s) 337, 508, 1064
Hpy188I TCNGA 4 cut(s) 263, 733, 1044, 1083
Hpy188III TCNNGA 5 cut(s) 208, 284, 652, 667, 770
Hpy8I GTNNAC 3 cut(s) 337, 508, 1064
HpyAV CCTTC 6 cut(s) 27, 245, 479, 738, 1081, 1190
HpyCH4III ACNGT 3 cut(s) 188, 281, 347
HpyCH4IV ACGT 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 6 cut(s) 85, 119, 424, 472, 524, 855
HpyF3I CTNAG 5 cut(s) 96, 674, 1041, 1104, 1163
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 6 cut(s) 35, 44, 160, 343, 574, 592
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 4 cut(s) 52, 604, 890, 1091
LmnI GCTCC 5 cut(s) 118, 415, 471, 712, 1008
Lsp1109I GCAGC 3 cut(s) 172, 472, 1120
LweI GCATC 2 cut(s) 163, 201
MaeI CTAG 2 cut(s) 123, 177
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 43, 1099
MalI GATC 4 cut(s) 54, 606, 892, 1093
MboI GATC 4 cut(s) 52, 604, 890, 1091
MflI RGATCY 2 cut(s) 604, 890
MhlI GDGCHC 5 cut(s) 115, 454, 747, 851, 1005
MluCI AATT 8 cut(s) 264, 305, 643, 898, 937, 955, 1122, 1174
MlyI GAGTC 6 cut(s) 161, 395, 586, 649, 698, 1069
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 4 cut(s) 267, 308, 363, 992
MslI CAYNNNNRTG 3 cut(s) 209, 225, 569
MspA1I CMGCKG 1 cut(s) 881
MspI CCGG 3 cut(s) 413, 836, 930
MspR9I CCNGG 3 cut(s) 106, 930, 1134
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 2 cut(s) 106, 1134
MwoI GCNNNNNNNGC 6 cut(s) 85, 119, 424, 472, 524, 855
NciI CCSGG 1 cut(s) 930
NcoI CCATGG 1 cut(s) 570
NdeII GATC 4 cut(s) 52, 604, 890, 1091
NlaIII CATG 6 cut(s) 35, 44, 160, 343, 574, 592
NlaIV GGNNCC 5 cut(s) 102, 302, 467, 892, 1004
NmuCI GTSAC 2 cut(s) 43, 1099
NsbI TGCGCA 1 cut(s) 231
NspI RCATGY 2 cut(s) 35, 343
PctI GAATGC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 3 cut(s) 255, 925, 1159
PfoI TCCNGGA 1 cut(s) 928
PkrI GCNGC 4 cut(s) 162, 487, 1110, 1169
PleI GAGTC 6 cut(s) 160, 395, 586, 649, 697, 1068
PpsI GAGTC 6 cut(s) 160, 395, 586, 649, 697, 1068
PshBI ATTAAT 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 115
Psp6I CCWGG 2 cut(s) 104, 1132
PspGI CCWGG 2 cut(s) 104, 1132
PspN4I GGNNCC 5 cut(s) 102, 302, 467, 892, 1004
PspPI GGNCC 2 cut(s) 301, 1130
PsrI GAACNNNNNNTAC 2 cut(s) 825, 857
PstI CTGCAG 1 cut(s) 246
PstNI CAGNNNCTG 2 cut(s) 485, 710
PsuI RGATCY 2 cut(s) 604, 890
PvuII CAGCTG 1 cut(s) 881
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 3 cut(s) 209, 225, 569
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 4 cut(s) 267, 308, 363, 992
SatI GCNGC 4 cut(s) 161, 486, 1109, 1168
Sau3AI GATC 4 cut(s) 52, 604, 890, 1091
Sau96I GGNCC 2 cut(s) 301, 1130
SchI GAGTC 6 cut(s) 161, 395, 586, 649, 698, 1069
ScrFI CCNGG 3 cut(s) 106, 930, 1134
SduI GDGCHC 5 cut(s) 115, 454, 747, 851, 1005
SfaNI GCATC 2 cut(s) 163, 201
SfcI CTRYAG 3 cut(s) 242, 876, 945
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 3 cut(s) 209, 225, 569
SmlI CTYRAG 3 cut(s) 89, 650, 722
SmoI CTYRAG 3 cut(s) 89, 650, 722
Sse9I AATT 8 cut(s) 264, 305, 643, 898, 937, 955, 1122, 1174
SsiI CCGC 2 cut(s) 473, 1168
SspMI CTAG 2 cut(s) 123, 177
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 104, 928, 1132
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 3 cut(s) 188, 281, 347
TaiI ACGT 1 cut(s) 297
TaqI TCGA 2 cut(s) 771, 1178
TasI AATT 8 cut(s) 264, 305, 643, 898, 937, 955, 1122, 1174
TauI GCSGC 1 cut(s) 1170
TfiI GAWTC 3 cut(s) 255, 925, 1159
Tru1I TTAA 4 cut(s) 267, 308, 363, 992
Tru9I TTAA 4 cut(s) 267, 308, 363, 992
TscAI CASTG 4 cut(s) 124, 193, 350, 1108
TseFI GTSAC 2 cut(s) 43, 1099
TseI GCWGC 3 cut(s) 160, 485, 1108
Tsp45I GTSAC 2 cut(s) 43, 1099
TspDTI ATGAA 4 cut(s) 566, 656, 819, 885
TspRI CASTG 4 cut(s) 124, 193, 350, 1108
VpaK11BI GGWCC 1 cut(s) 301
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 3 cut(s) 643, 898, 1174
XceI RCATGY 2 cut(s) 35, 343
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 2 cut(s) 123, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.