Rroxscaffold_6G00407400

rho GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011795
Physical Location & Seq
Forward (+)
30078071 .. 30082309
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407400.1

Sequence Viewer

Length: 1230 bp
ATGACTGAGGTACTCCAATCCCCATCTCACTTCCCTTCACCTTCAAGCTCTTCCCCACCCACAAGTAATGATGGCGCATACCCACATGCCCTTATTACCAGTCCTTCCGTAGGTGAGAGCCTGCAAGCCCATTTGAGTTCAGAGGAGGAAGAACAAGAAGAAGAGGAGAGGAAGAGGAGCGAGAGAGAGAGAGACAGAGAGGGAGATCAGCTGTCGCTCTTGACGCTTCTTGTGGCTGCTTTTAGGAAGTCTTTGATTGGGTGCAGTACTACTGGGACTGGGACCGAGAGAGCTGAGCTTTCCAACATGGAGATTGGGTGGCCTTCCAATGTTAGGCACGTTGCCCATGTCACCTTTGATCGGTTCAATGGCTTTCTGGGTTTGCCGGTTGAGCTTGAGCCTGAGGTTCCCAGGAGGGCTCCTAGTGCTAGTGCGAATGTTTTCGGGGTTTCCACAGAGTCCATGCAGCTATCATTTGATGCTAGAGGAAACAGTGTCCCCACAATACTCATCTTGATGCAGAGACATTTATATGCGCAGGGGGGTCTGCAGGCAGAAGGAATCTTCAGAATTAATGGCGAGAACAGTCAGGAAGAGTACGTCAGGGACCAATTAAACAAGGGAATAATACCAGAGGGTGTTGACATGCACTGTTTAGCAGGTCTTATTAAGGCTTGGTTTAGAGAACTCCCAACTGCTGTATTGGACTCTCTCTCACCAGAGCAGGTAATGCAGTCGCAGACGGAAGAGGAGTGTGCTCAGCTTGTTAGGCTCCTTCCGCCAACAGAAGCTGCATTATTGGATTGGGCAGTAAACCTAATGGCCGATGTTGCACAGATGGAACACCTGAACAAGATGAATGCACGCAACATTGCCATGGTCTTTGCACCAAACATGACTCAAATGGTAGATCCTTTGACTGCATTGATGTATGCAGTCCAAGTGATGAATTTCCTCAAGACTCTTATAGTCAAGACACTAAGAGAGAGAGAAGAGTCTATGGTGGAAACAGCTCCTGTCCCACGCCTTGAGCCTTCTGATGAGGATGAGCACCAAAGAACTTTTCAACCATATGTCGAAGAGACTAATGAGGAGGCTAACAAGGAAAATGAAGAGGAGAATGTATTTGTTGCCAAAGAACCTGCTTTACCGAGCCCCCTCGCACTTTACAAGATGAACCTACAGCTGAAAGTGGATCCCAGAATTTCCTCTCTTCTATCAAATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD RhoGAP

Protein Analysis

409

Amino Acids

45.62

Weight (kDa)

4.71

Isoelectric Point (pI)

66.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RhoGAP PF00620 167 - 300 1.1e-22 RhoGAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011795)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11490
fragaria_vesca FvH4_6g19150
malus_domestica MD12G1027300.v1.1 MD14G1027500.v1.1
prunus_persica Prupe.7G104200_v2.0.a1
pyrus_communis pycom12g02620 pycom14g02620
rosa_chinensis RchiOBHm_Chr3g0474261
rosa_laevigata RLG00000023935
rosa_multiflora Rmu_sc0001803.1_g000025 Rmu_sc0004507.1_g000020 Rmu_sc0029669.1_g000001
rosa_roxburghii Rroxscaffold_6G00407400
rosa_rugosa Rorug03G0139800
rosa_samantha Rh3AG190400 Rh3BG219600 Rh3CG214800 Rh3DG215100
rosa_wichuraiana Rw3G017370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 537
Acc36I ACCTGC 3 cut(s) 650, 715, 1150
AciI CCGC 1 cut(s) 779
AclWI GGATC 3 cut(s) 905, 1190, 1203
AcoI YGGCCR 1 cut(s) 822
AcsI RAATTY 2 cut(s) 949, 1203
AcuI CTGAAG 1 cut(s) 550
AfaI GTAC 3 cut(s) 12, 268, 599
AfiI CCNNNNNNNGG 3 cut(s) 110, 333, 360
AgsI TTSAA 3 cut(s) 45, 367, 1067
AjnI CCWGG 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 1047, 1079
Alw21I GWGCWC 2 cut(s) 760, 1053
Alw26I GTCTC 3 cut(s) 186, 517, 1076
AlwI GGATC 3 cut(s) 905, 1190, 1203
AlwNI CAGNNNCTG 2 cut(s) 791, 1016
AoxI GGCC 2 cut(s) 320, 822
ApeKI GCWGC 3 cut(s) 236, 466, 791
ApoI RAATTY 2 cut(s) 949, 1203
AseI ATTAAT 1 cut(s) 573
Asp700I GAANNNNTTC 1 cut(s) 440
AspLEI GCGC 2 cut(s) 77, 538
AspS9I GGNCC 2 cut(s) 282, 607
AsuHPI GGTGA 4 cut(s) 30, 125, 343, 708
AvaII GGWCC 2 cut(s) 282, 607
AxyI CCTNAGG 1 cut(s) 402
BamHI GGATCC 1 cut(s) 1195
BanII GRGCYC 2 cut(s) 421, 1157
Bbv12I GWGCWC 2 cut(s) 760, 1053
BbvI GCAGC 3 cut(s) 223, 478, 778
BccI CCATC 3 cut(s) 31, 65, 832
BciT130I CCWGG 1 cut(s) 412
BcoDI GTCTC 3 cut(s) 186, 517, 1076
BfaI CTAG 3 cut(s) 423, 429, 483
BfmI CTRYAG 2 cut(s) 548, 1181
BfuAI ACCTGC 3 cut(s) 650, 715, 1150
BisI GCNGC 3 cut(s) 237, 467, 792
BlpI GCTNAGC 2 cut(s) 294, 759
BlsI GCNGC 3 cut(s) 238, 468, 793
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 412
Bme18I GGWCC 2 cut(s) 282, 607
BmgT120I GGNCC 2 cut(s) 282, 607
BmiI GGNNCC 6 cut(s) 283, 408, 420, 608, 773, 1197
BmrFI CCNGG 1 cut(s) 412
BmrI ACTGGG 2 cut(s) 282, 288
BmsI GCATC 2 cut(s) 469, 507
BmuI ACTGGG 2 cut(s) 282, 288
Bpu1102I GCTNAGC 2 cut(s) 294, 759
BpuEI CTTGAG 3 cut(s) 416, 941, 1049
BsaJI CCNNGG 2 cut(s) 410, 876
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 333, 360
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 3 cut(s) 99, 277, 283
Bse21I CCTNAGG 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 870
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 410, 876
BseGI GGATG 1 cut(s) 1051
BseLI CCNNNNNNNGG 3 cut(s) 110, 333, 360
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 3 cut(s) 285, 393, 773
BseNI ACTGG 3 cut(s) 99, 277, 283
BseRI GAGGAG 6 cut(s) 158, 179, 190, 764, 1106, 1130
BseXI GCAGC 3 cut(s) 223, 478, 778
BsgI GTGCAG 1 cut(s) 283
BshFI GGCC 2 cut(s) 322, 824
BsiHKAI GWGCWC 2 cut(s) 760, 1053
BsiSI CCGG 1 cut(s) 386
BslFI GGGAC 5 cut(s) 289, 295, 482, 620, 1004
BslI CCNNNNNNNGG 3 cut(s) 110, 333, 360
BsmAI GTCTC 3 cut(s) 186, 517, 1076
BsmFI GGGAC 5 cut(s) 289, 295, 482, 620, 1004
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 2 cut(s) 322, 824
Bsp1286I GDGCHC 4 cut(s) 421, 760, 1053, 1157
Bsp143I GATC 4 cut(s) 205, 358, 910, 1195
Bsp1720I GCTNAGC 2 cut(s) 294, 759
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 1 cut(s) 779
BspANI GGCC 2 cut(s) 322, 824
BspCNI CTCAG 3 cut(s) 286, 394, 772
BspLI GGNNCC 6 cut(s) 283, 408, 420, 608, 773, 1197
BspMAI CTGCAG 1 cut(s) 552
BspMI ACCTGC 3 cut(s) 650, 715, 1150
BspPI GGATC 3 cut(s) 905, 1190, 1203
BspQI GCTCTTC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 870
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 3 cut(s) 99, 277, 283
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 410, 876
BssMI GATC 4 cut(s) 205, 358, 910, 1195
BssT1I CCWWGG 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 3 cut(s) 494, 587, 653
Bst6I CTCTTC 9 cut(s) 55, 156, 167, 588, 741, 987, 1074, 1107, 1218
BstAPI GCANNNNNTGC 1 cut(s) 730
BstC8I GCNNGC 4 cut(s) 122, 126, 552, 865
BstDEI CTNAG 5 cut(s) 6, 294, 402, 759, 980
BstDSI CCRYGG 1 cut(s) 876
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 1051
BstHHI GCGC 2 cut(s) 77, 538
BstKTI GATC 4 cut(s) 208, 361, 913, 1198
BstMAI GTCTC 3 cut(s) 186, 517, 1076
BstMBI GATC 4 cut(s) 205, 358, 910, 1195
BstMWI GCNNNNNNNGC 7 cut(s) 223, 391, 425, 730, 769, 778, 830
BstNI CCWGG 1 cut(s) 412
BstNSI RCATGY 2 cut(s) 89, 649
BstSCI CCNGG 1 cut(s) 410
BstSFI CTRYAG 2 cut(s) 548, 1181
BstV1I GCAGC 3 cut(s) 223, 478, 778
BstX2I RGATCY 2 cut(s) 910, 1195
BstYI RGATCY 2 cut(s) 910, 1195
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 2 cut(s) 322, 824
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 1 cut(s) 1051
BtsIMutI CAGTG 2 cut(s) 499, 649
BveI ACCTGC 3 cut(s) 650, 715, 1150
Cac8I GCNNGC 4 cut(s) 122, 126, 552, 865
CaiI CAGNNNCTG 2 cut(s) 791, 1016
CfoI GCGC 2 cut(s) 77, 538
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 282, 607
CseI GACGC 1 cut(s) 232
Csp6I GTAC 3 cut(s) 11, 267, 598
CviAII CATG 7 cut(s) 86, 307, 347, 463, 646, 877, 895
CviQI GTAC 3 cut(s) 11, 267, 598
DdeI CTNAG 5 cut(s) 6, 294, 402, 759, 980
DpnI GATC 4 cut(s) 207, 360, 912, 1197
DpnII GATC 4 cut(s) 205, 358, 910, 1195
EaeI YGGCCR 1 cut(s) 822
Eam1104I CTCTTC 9 cut(s) 55, 156, 167, 588, 741, 987, 1074, 1107, 1218
EarI CTCTTC 9 cut(s) 55, 156, 167, 588, 741, 987, 1074, 1107, 1218
EciI GGCGGA 1 cut(s) 768
Eco130I CCWWGG 1 cut(s) 876
Eco24I GRGCYC 2 cut(s) 421, 1157
Eco47I GGWCC 2 cut(s) 282, 607
Eco57I CTGAAG 1 cut(s) 550
Eco81I CCTNAGG 1 cut(s) 402
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 876
EcoT38I GRGCYC 2 cut(s) 421, 1157
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 7 cut(s) 89, 310, 350, 466, 649, 880, 898
FaqI GGGAC 5 cut(s) 289, 295, 482, 620, 1004
FatI CATG 7 cut(s) 85, 306, 346, 462, 645, 876, 894
FauNDI CATATG 1 cut(s) 1072
Fnu4HI GCNGC 3 cut(s) 237, 467, 792
FokI GGATG 1 cut(s) 1058
FriOI GRGCYC 2 cut(s) 421, 1157
Fsp4HI GCNGC 3 cut(s) 237, 467, 792
FspBI CTAG 3 cut(s) 423, 429, 483
FspI TGCGCA 1 cut(s) 537
GlaI GCGC 2 cut(s) 76, 537
GluI GCNGC 3 cut(s) 237, 467, 792
HaeIII GGCC 2 cut(s) 322, 824
HapII CCGG 1 cut(s) 386
HgaI GACGC 1 cut(s) 232
HhaI GCGC 2 cut(s) 77, 538
Hin1II CATG 7 cut(s) 89, 310, 350, 466, 649, 880, 898
Hin6I GCGC 2 cut(s) 75, 536
HinP1I GCGC 2 cut(s) 75, 536
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HinfI GANTC 6 cut(s) 458, 561, 707, 898, 961, 995
HpaII CCGG 1 cut(s) 386
HphI GGTGA 4 cut(s) 30, 125, 343, 708
Hpy166II GTNNAC 2 cut(s) 643, 814
Hpy188I TCNGA 3 cut(s) 142, 569, 1039
Hpy188III TCNNGA 5 cut(s) 220, 514, 590, 958, 973
Hpy8I GTNNAC 2 cut(s) 643, 814
HpyAV CCTTC 7 cut(s) 45, 51, 114, 333, 551, 785, 1044
HpyCH4III ACNGT 3 cut(s) 494, 587, 653
HpyCH4IV ACGT 2 cut(s) 339, 600
HpyF10VI GCNNNNNNNGC 7 cut(s) 223, 391, 425, 730, 769, 778, 830
HpyF3I CTNAG 5 cut(s) 6, 294, 402, 759, 980
HpySE526I ACGT 2 cut(s) 339, 600
Hsp92II CATG 7 cut(s) 89, 310, 350, 466, 649, 880, 898
HspAI GCGC 2 cut(s) 75, 536
Kzo9I GATC 4 cut(s) 205, 358, 910, 1195
LguI GCTCTTC 1 cut(s) 55
LmnI GCTCC 4 cut(s) 177, 424, 777, 1018
Lsp1109I GCAGC 3 cut(s) 223, 478, 778
LweI GCATC 2 cut(s) 469, 507
MaeI CTAG 3 cut(s) 423, 429, 483
MaeII ACGT 2 cut(s) 339, 600
MaeIII GTNAC 1 cut(s) 349
MalI GATC 4 cut(s) 207, 360, 912, 1197
MboI GATC 4 cut(s) 205, 358, 910, 1195
MflI RGATCY 2 cut(s) 910, 1195
MhlI GDGCHC 4 cut(s) 421, 760, 1053, 1157
MluCI AATT 4 cut(s) 570, 611, 949, 1203
MlyI GAGTC 5 cut(s) 467, 701, 892, 955, 1004
MmeI TCCRAC 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 440
MseI TTAA 3 cut(s) 573, 614, 669
MslI CAYNNNNRTG 3 cut(s) 515, 531, 875
MspA1I CMGCKG 2 cut(s) 211, 1186
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 1 cut(s) 412
MwoI GCNNNNNNNGC 7 cut(s) 223, 391, 425, 730, 769, 778, 830
NcoI CCATGG 1 cut(s) 876
NdeI CATATG 1 cut(s) 1072
NdeII GATC 4 cut(s) 205, 358, 910, 1195
NlaIII CATG 7 cut(s) 89, 310, 350, 466, 649, 880, 898
NlaIV GGNNCC 6 cut(s) 283, 408, 420, 608, 773, 1197
NmuCI GTSAC 1 cut(s) 349
NsbI TGCGCA 1 cut(s) 537
NspI RCATGY 2 cut(s) 89, 649
PciSI GCTCTTC 1 cut(s) 55
PctI GAATGC 1 cut(s) 865
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 1 cut(s) 561
PkrI GCNGC 3 cut(s) 238, 468, 793
PleI GAGTC 5 cut(s) 466, 701, 892, 955, 1003
PpsI GAGTC 5 cut(s) 466, 701, 892, 955, 1003
PshBI ATTAAT 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 6 cut(s) 283, 408, 420, 608, 773, 1197
PspPI GGNCC 2 cut(s) 282, 607
PsrI GAACNNNNNNTAC 2 cut(s) 1131, 1163
PstI CTGCAG 1 cut(s) 552
PstNI CAGNNNCTG 2 cut(s) 791, 1016
PsuI RGATCY 2 cut(s) 910, 1195
PvuII CAGCTG 2 cut(s) 211, 1186
RsaI GTAC 3 cut(s) 12, 268, 599
RsaNI GTAC 3 cut(s) 11, 267, 598
RseI CAYNNNNRTG 3 cut(s) 515, 531, 875
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 3 cut(s) 573, 614, 669
SatI GCNGC 3 cut(s) 237, 467, 792
Sau3AI GATC 4 cut(s) 205, 358, 910, 1195
Sau96I GGNCC 2 cut(s) 282, 607
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 5 cut(s) 467, 701, 892, 955, 1004
ScrFI CCNGG 1 cut(s) 412
SduI GDGCHC 4 cut(s) 421, 760, 1053, 1157
SfaNI GCATC 2 cut(s) 469, 507
SfcI CTRYAG 2 cut(s) 548, 1181
SinI GGWCC 2 cut(s) 282, 607
SmiMI CAYNNNNRTG 3 cut(s) 515, 531, 875
SmlI CTYRAG 3 cut(s) 395, 956, 1028
SmoI CTYRAG 3 cut(s) 395, 956, 1028
Sse9I AATT 4 cut(s) 570, 611, 949, 1203
SsiI CCGC 1 cut(s) 779
SspMI CTAG 3 cut(s) 423, 429, 483
StyD4I CCNGG 1 cut(s) 410
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 3 cut(s) 494, 587, 653
TaiI ACGT 2 cut(s) 342, 603
TaqI TCGA 1 cut(s) 1077
TaqII GACCGA 1 cut(s) 299
TasI AATT 4 cut(s) 570, 611, 949, 1203
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 561
Tru1I TTAA 3 cut(s) 573, 614, 669
Tru9I TTAA 3 cut(s) 573, 614, 669
TscAI CASTG 2 cut(s) 499, 656
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 3 cut(s) 236, 466, 791
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 872, 962, 1125, 1190
TspGWI ACGGA 2 cut(s) 97, 758
TspRI CASTG 2 cut(s) 499, 656
VpaK11BI GGWCC 2 cut(s) 282, 607
VspI ATTAAT 1 cut(s) 573
XagI CCTNNNNNAGG 1 cut(s) 108
XapI RAATTY 2 cut(s) 949, 1203
XceI RCATGY 2 cut(s) 89, 649
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 3 cut(s) 423, 429, 483
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.