AT3G11690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013255
Physical Location & Seq
Forward (+)
3694956 .. 3696749
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11690.1

Sequence Viewer

Length: 759 bp
ATGAACACGACGTTACGTTACGATCCGAGACAGATCTCGAGGCAAACGAAACCGTCAGATACACCATCGTCTTCTCCGTCTCGTAGTAACCGGAGACAGCCTTTGCTTCAGAGAAGTCTCTCTTCTCCGTCACCACGAGCTTCTTGCGGCGGATCTACTCCCGCCGAGTTTTGCGGTGGTACGACGGCGAGTTGCGCCGCCGTGTGGTGTTGTTGTCCCTGCGGACTCGTTAACCTACTCGTTCTCGCGATCTACAAAGTTCCTAAAGGAATCTGCCGTCGCGCTATCAGAAGTCGCCGCCGTAAACAACTCGTGAAGAACGGAATCCTTCCGCCGCTTCCGACGGACGGGAAAAACGAGCGGATGCAGAGAGTTTTTCAGAATTCTGAATTCGCGATTCATCCGTTGGATAGCGACGATGTGTCTGACGACGAAGATGATGATAATTTCTTGGATCTGAAGTATATCGGAAAATCGGTAGCGACGGGGTTTACGACGGAGGAGGAGACTGATGAAGATGATGAGGCGGTGTTAGCATTAGAGAAAGAGATGTGGAATAGGTTTTACGGAGCTGGATTTTGGCGAAGTCCGTCACAGAGAGAATCAGTTTCGTCTCCGAGAGTTTCCAAGTCTCTTTCGTCATCGCCGAGACAATCGTTTACTGAAGTATACCGGAATAGGGATACAACGGTTAGAGGAGGAGGAGGAGGAGCTACGGTGGTGGCGGCGACACCAAGAGCCGTTAGGCATTTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

27.86

Weight (kDa)

8.95

Isoelectric Point (pI)

68.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11690 AT5G06380
fragaria_vesca FvH4_6g20920
malus_domestica MD12G1045100.v1.1 MD14G1044000.v1.1
prunus_persica Prupe.7G090300_v2.0.a1
pyrus_communis pycom14g03730
rosa_chinensis RchiOBHm_Chr3g0477261
rosa_laevigata RLG00000023732
rosa_multiflora Rmu_co8078510.1_g000001 Rmu_sc0000348.1_g000009
rosa_roxburghii Rroxscaffold_6G00404280 Rroxscaffold_6G00404760
rosa_rugosa Rorug03G0159400
rosa_samantha Rh3AG209700 Rh3BG243400
rosa_wichuraiana Rw0G000260 Rw0G021730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 361
AccI GTMKAC 1 cut(s) 669
AccII CGCG 3 cut(s) 248, 282, 395
AclWI GGATC 3 cut(s) 17, 160, 462
AcsI RAATTY 2 cut(s) 382, 389
AcuI CTGAAG 3 cut(s) 92, 479, 684
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 3 cut(s) 204, 347, 679
AhdI GACNNNNNGTC 1 cut(s) 421
AluBI AGCT 3 cut(s) 140, 572, 713
AluI AGCT 3 cut(s) 140, 572, 713
Alw26I GTCTC 8 cut(s) 22, 84, 88, 122, 500, 618, 636, 643
AlwI GGATC 3 cut(s) 17, 160, 462
Ama87I CYCGRG 1 cut(s) 37
ApoI RAATTY 2 cut(s) 382, 389
AspLEI GCGC 2 cut(s) 197, 284
AsuHPI GGTGA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 37
BaeI ACNNNNGTAYC 2 cut(s) 675, 708
BauI CACGAG 2 cut(s) 135, 311
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 1 cut(s) 73
BceAI ACGGC 5 cut(s) 185, 201, 261, 285, 725
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciVI GTATCC 1 cut(s) 676
BcoDI GTCTC 8 cut(s) 22, 84, 88, 122, 500, 618, 636, 643
BfuI GTATCC 1 cut(s) 676
BglII AGATCT 1 cut(s) 33
BisI GCNGC 5 cut(s) 148, 198, 298, 335, 726
BlsI GCNGC 5 cut(s) 149, 199, 299, 336, 727
BmeRI GACNNNNNGTC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 37
BmsI GCATC 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 63
BsaWI WCCGGW 2 cut(s) 90, 672
BsaXI ACNNNNNCTCC 2 cut(s) 702, 732
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 347, 679
BseGI GGATG 2 cut(s) 369, 400
BseLI CCNNNNNNNGG 3 cut(s) 204, 347, 679
BseRI GAGGAG 7 cut(s) 515, 518, 711, 714, 717, 720, 723
Bsh1236I CGCG 3 cut(s) 248, 282, 395
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 91, 673
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 3 cut(s) 204, 347, 679
BsmAI GTCTC 8 cut(s) 22, 84, 88, 122, 500, 618, 636, 643
BsmBI CGTCTC 2 cut(s) 84, 618
BsmFI GGGAC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 5 cut(s) 22, 33, 152, 249, 454
Bsp68I TCGCGA 2 cut(s) 248, 395
BspFNI CGCG 3 cut(s) 248, 282, 395
BspPI GGATC 3 cut(s) 17, 160, 462
BsrBI CCGCTC 1 cut(s) 361
BssMI GATC 5 cut(s) 22, 33, 152, 249, 454
BssNAI GTATAC 1 cut(s) 670
BssSI CACGAG 2 cut(s) 135, 311
Bst1107I GTATAC 1 cut(s) 670
Bst2BI CACGAG 2 cut(s) 135, 311
Bst4CI ACNGT 3 cut(s) 54, 691, 718
Bst6I CTCTTC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 369, 400
BstFNI CGCG 3 cut(s) 248, 282, 395
BstHHI GCGC 2 cut(s) 197, 284
BstKTI GATC 5 cut(s) 25, 36, 155, 252, 457
BstMAI GTCTC 8 cut(s) 22, 84, 88, 122, 500, 618, 636, 643
BstMBI GATC 5 cut(s) 22, 33, 152, 249, 454
BstMWI GCNNNNNNNGC 2 cut(s) 194, 533
BstUI CGCG 3 cut(s) 248, 282, 395
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 3 cut(s) 33, 152, 454
BstYI RGATCY 3 cut(s) 33, 152, 454
BstZ17I GTATAC 1 cut(s) 670
BsuI GTATCC 1 cut(s) 676
BtgZI GCGATG 1 cut(s) 627
BtsCI GGATG 2 cut(s) 369, 400
BtuMI TCGCGA 2 cut(s) 248, 395
CfoI GCGC 2 cut(s) 197, 284
Csp6I GTAC 1 cut(s) 180
CviJI RGCY 5 cut(s) 100, 140, 572, 713, 740
CviKI_1 RGCY 5 cut(s) 100, 140, 572, 713, 740
CviQI GTAC 1 cut(s) 180
DpnI GATC 5 cut(s) 24, 35, 154, 251, 456
DpnII GATC 5 cut(s) 22, 33, 152, 249, 454
DriI GACNNNNNGTC 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 127
Eam1105I GACNNNNNGTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 2 cut(s) 165, 321
Eco57I CTGAAG 3 cut(s) 92, 479, 684
Eco88I CYCGRG 1 cut(s) 37
EcoRI GAATTC 2 cut(s) 382, 389
Esp3I CGTCTC 2 cut(s) 84, 618
FaiI YATR 2 cut(s) 465, 670
FalI AAGNNNNNCTT 2 cut(s) 106, 138
FaqI GGGAC 1 cut(s) 201
FauI CCCGC 1 cut(s) 169
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 5 cut(s) 148, 198, 298, 335, 726
FokI GGATG 2 cut(s) 376, 387
Fsp4HI GCNGC 5 cut(s) 148, 198, 298, 335, 726
GlaI GCGC 2 cut(s) 196, 283
GluI GCNGC 5 cut(s) 148, 198, 298, 335, 726
HapII CCGG 2 cut(s) 91, 673
HhaI GCGC 2 cut(s) 197, 284
Hin6I GCGC 2 cut(s) 195, 282
HinP1I GCGC 2 cut(s) 195, 282
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 5 cut(s) 225, 270, 324, 397, 602
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 2 cut(s) 91, 673
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 5 cut(s) 232, 305, 492, 660, 670
Hpy188III TCNNGA 4 cut(s) 37, 247, 313, 394
Hpy8I GTNNAC 5 cut(s) 232, 305, 492, 660, 670
Hpy99I CGWCG 8 cut(s) 13, 187, 282, 346, 419, 434, 487, 499
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 3 cut(s) 54, 691, 718
HpyCH4IV ACGT 2 cut(s) 11, 16
HpyCH4V TGCA 1 cut(s) 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 533
HpySE526I ACGT 2 cut(s) 11, 16
HspAI GCGC 2 cut(s) 195, 282
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 5 cut(s) 22, 33, 152, 249, 454
LmnI GCTCC 2 cut(s) 569, 710
LpnPI CCDG 4 cut(s) 104, 232, 558, 686
LweI GCATC 1 cut(s) 354
MaeII ACGT 2 cut(s) 11, 16
MaeIII GTNAC 5 cut(s) 12, 17, 86, 129, 591
MalI GATC 5 cut(s) 24, 35, 154, 251, 456
MbiI CCGCTC 1 cut(s) 361
MboI GATC 5 cut(s) 22, 33, 152, 249, 454
MboII GAAGA 5 cut(s) 63, 114, 328, 446, 527
MflI RGATCY 3 cut(s) 33, 152, 454
MluCI AATT 3 cut(s) 382, 389, 445
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 2 cut(s) 365, 387
MnlI CCTC 9 cut(s) 33, 493, 496, 517, 689, 692, 695, 698, 701
MseI TTAA 1 cut(s) 231
MspI CCGG 2 cut(s) 91, 673
MvnI CGCG 3 cut(s) 248, 282, 395
MwoI GCNNNNNNNGC 2 cut(s) 194, 533
NdeII GATC 5 cut(s) 22, 33, 152, 249, 454
NmeAIII GCCGAG 2 cut(s) 190, 672
NmuCI GTSAC 2 cut(s) 129, 591
NruI TCGCGA 2 cut(s) 248, 395
PaeR7I CTCGAG 1 cut(s) 37
PcsI WCGNNNNNNNCGW 5 cut(s) 44, 74, 354, 491, 644
PfeI GAWTC 4 cut(s) 270, 324, 397, 602
PkrI GCNGC 5 cut(s) 149, 199, 299, 336, 727
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PsuI RGATCY 3 cut(s) 33, 152, 454
RruI TCGCGA 2 cut(s) 248, 395
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 5 cut(s) 148, 198, 298, 335, 726
Sau3AI GATC 5 cut(s) 22, 33, 152, 249, 454
SchI GAGTC 1 cut(s) 219
SetI ASST 7 cut(s) 14, 19, 142, 237, 563, 574, 715
SfaNI GCATC 1 cut(s) 354
Sfr274I CTCGAG 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 3 cut(s) 382, 389, 445
TaaI ACNGT 3 cut(s) 54, 691, 718
TaiI ACGT 2 cut(s) 14, 19
TaqI TCGA 1 cut(s) 38
TasI AATT 3 cut(s) 382, 389, 445
TauI GCSGC 5 cut(s) 150, 200, 300, 337, 728
TfiI GAWTC 4 cut(s) 270, 324, 397, 602
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseFI GTSAC 2 cut(s) 129, 591
Tsp45I GTSAC 2 cut(s) 129, 591
TspDTI ATGAA 3 cut(s) 17, 389, 528
TspGWI ACGGA 8 cut(s) 66, 117, 336, 359, 393, 512, 579, 582
XapI RAATTY 2 cut(s) 382, 389
XhoI CTCGAG 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.