Rroxscaffold_6G00404280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013255
Physical Location & Seq
Forward (+)
26798943 .. 26799473
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404280.1

Sequence Viewer

Length: 531 bp
ATGTCGTCCCGGCACGTCTTCCTCCGGCAAGCGTCCTCCGGGAACCGCCGGCGGCCTCTGCTCAAAACCCACGTCACCGACTGCAAGGACCGGGTGGCCGAAGTCGCCGGCGGGACCGCCGCGGAGTGCGCTGCCGTGTGTTGCTGCTGCCCGTGTGGGCTGGTCAATCTGCTAGTCCTGGTAATCTACAAGGTCCCGGTCAGGCTCTGCCGCCGCGTCATGAGGAAGAACCGCCGGCAGAGGCTCATCAAGAAAGGGCTTCTTCCGCCGCGCCACGTGCAATGCACGTGCGGCTGCGACGGCCTGGAGCTGCAGTTCCACCCGGTCGGGTTCGAGTCGCTGACGTCGGAGTTCAAGGCGGTGCAGAAGTTGGTGATGGAAGAGGAGTCGTCTGACGAGGATGTGATTCAGCTCGAGAAGGAGATGTGGGATCGGTTTTACGGCACTGGGTTTTGGAGAAGCCCAACTCAGAGAGAGACTCCCTCCATCTCCATCTCCAACTCCAACTCCAAGATGATCACCGGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.87

Weight (kDa)

9.16

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11690 AT5G06380
fragaria_vesca FvH4_6g20920
malus_domestica MD12G1045100.v1.1 MD14G1044000.v1.1
prunus_persica Prupe.7G090300_v2.0.a1
pyrus_communis pycom14g03730
rosa_chinensis RchiOBHm_Chr3g0477261
rosa_laevigata RLG00000023732
rosa_multiflora Rmu_co8078510.1_g000001 Rmu_sc0000348.1_g000009
rosa_roxburghii Rroxscaffold_6G00404280 Rroxscaffold_6G00404760
rosa_rugosa Rorug03G0159400
rosa_samantha Rh3AG209700 Rh3BG243400
rosa_wichuraiana Rw0G000260 Rw0G021730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
AccII CGCG 3 cut(s) 122, 216, 271
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 96
AcvI CACGTG 2 cut(s) 277, 288
AcyI GRCGYC 1 cut(s) 344
AgeI ACCGGT 1 cut(s) 521
AgsI TTSAA 1 cut(s) 355
AjiI CACGTC 2 cut(s) 16, 73
AjnI CCWGG 2 cut(s) 177, 303
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 2 cut(s) 310, 412
AluI AGCT 2 cut(s) 310, 412
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 438
AlwNI CAGNNNCTG 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 3 cut(s) 53, 96, 301
ApeKI GCWGC 5 cut(s) 131, 144, 147, 294, 310
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AsiGI ACCGGT 1 cut(s) 521
AspLEI GCGC 2 cut(s) 131, 273
AspS9I GGNCC 3 cut(s) 88, 114, 193
AsuC2I CCSGG 5 cut(s) 10, 40, 92, 197, 323
AsuHPI GGTGA 3 cut(s) 67, 385, 511
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 3 cut(s) 88, 114, 193
BbrPI CACGTG 2 cut(s) 277, 288
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 5 cut(s) 118, 131, 134, 281, 297
BccI CCATC 3 cut(s) 370, 494, 500
BceAI ACGGC 3 cut(s) 119, 316, 457
BciT130I CCWGG 2 cut(s) 179, 305
BclI TGATCA 1 cut(s) 516
BcnI CCSGG 5 cut(s) 10, 40, 92, 197, 323
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 311
Bme1390I CCNGG 7 cut(s) 10, 40, 92, 179, 197, 305, 323
Bme18I GGWCC 3 cut(s) 88, 114, 193
BmeT110I CYCGRG 1 cut(s) 413
BmgBI CACGTC 2 cut(s) 16, 73
BmgT120I GGNCC 3 cut(s) 88, 114, 193
BmiI GGNNCC 3 cut(s) 44, 115, 195
BmrFI CCNGG 7 cut(s) 10, 40, 92, 179, 197, 305, 323
BmrI ACTGGG 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 10
BplI GAGNNNNNCTC 4 cut(s) 463, 495, 467, 499
BpmI CTGGAG 1 cut(s) 326
BpuMI CCSGG 5 cut(s) 10, 40, 92, 197, 323
BsaAI YACGTR 2 cut(s) 277, 288
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 521
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 491, 521
Bse118I RCCGGY 4 cut(s) 48, 107, 234, 521
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 179, 305
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 5 cut(s) 118, 131, 134, 281, 297
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 3 cut(s) 122, 216, 271
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 3 cut(s) 55, 98, 303
BshTI ACCGGT 1 cut(s) 521
BsiEI CGRYCG 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 413
BslFI GGGAC 2 cut(s) 127, 179
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 2 cut(s) 127, 179
BsnI GGCC 3 cut(s) 55, 98, 303
BsoBI CYCGRG 1 cut(s) 413
Bsp143I GATC 2 cut(s) 430, 516
BspANI GGCC 3 cut(s) 55, 98, 303
BspCNI CTCAG 1 cut(s) 481
BspFNI CGCG 3 cut(s) 122, 216, 271
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 3 cut(s) 44, 115, 195
BspMAI CTGCAG 1 cut(s) 315
BspPI GGATC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 287
BsrFI RCCGGY 4 cut(s) 48, 107, 234, 521
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 4 cut(s) 48, 107, 234, 521
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 430, 516
BssNI GRCGYC 1 cut(s) 344
Bst2UI CCWGG 2 cut(s) 179, 305
Bst6I CTCTTC 1 cut(s) 375
BstACI GRCGYC 1 cut(s) 344
BstBAI YACGTR 2 cut(s) 277, 288
BstC8I GCNNGC 4 cut(s) 30, 50, 109, 236
BstDEI CTNAG 1 cut(s) 468
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 3 cut(s) 122, 216, 271
BstHHI GCGC 2 cut(s) 131, 273
BstKTI GATC 2 cut(s) 433, 519
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 2 cut(s) 430, 516
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 7 cut(s) 58, 104, 128, 265, 277, 291, 300
BstNI CCWGG 2 cut(s) 179, 305
BstSCI CCNGG 7 cut(s) 8, 38, 90, 177, 195, 303, 321
BstSFI CTRYAG 1 cut(s) 311
BstUI CGCG 3 cut(s) 122, 216, 271
BstV1I GCAGC 5 cut(s) 118, 131, 134, 281, 297
BstV2I GAAGAC 1 cut(s) 10
BsuRI GGCC 3 cut(s) 55, 98, 303
BtgI CCRYGG 1 cut(s) 120
BtrI CACGTC 2 cut(s) 16, 73
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 4 cut(s) 30, 50, 109, 236
CaiI CAGNNNCTG 1 cut(s) 207
CciI TCATGA 1 cut(s) 219
CfoI GCGC 2 cut(s) 131, 273
Cfr10I RCCGGY 4 cut(s) 48, 107, 234, 521
Cfr13I GGNCC 3 cut(s) 88, 114, 193
Cfr42I CCGCGG 1 cut(s) 123
CseI GACGC 2 cut(s) 21, 205
CspAI ACCGGT 1 cut(s) 521
CviAII CATG 1 cut(s) 220
DdeI CTNAG 1 cut(s) 468
DpnI GATC 2 cut(s) 432, 518
DpnII GATC 2 cut(s) 430, 516
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 255
Eco47I GGWCC 3 cut(s) 88, 114, 193
Eco72I CACGTG 2 cut(s) 277, 288
Eco88I CYCGRG 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 177, 303
FaeI CATG 1 cut(s) 223
FaiI YATR 3 cut(s) 221, 527, 529
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 2 cut(s) 127, 179
FatI CATG 1 cut(s) 219
FauI CCCGC 1 cut(s) 104
FbaI TGATCA 1 cut(s) 516
FokI GGATG 1 cut(s) 413
FspBI CTAG 1 cut(s) 173
GlaI GCGC 2 cut(s) 130, 272
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 3 cut(s) 55, 98, 303
HgaI GACGC 2 cut(s) 21, 205
HhaI GCGC 2 cut(s) 131, 273
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 2 cut(s) 129, 271
HinP1I GCGC 2 cut(s) 129, 271
HinfI GANTC 4 cut(s) 335, 386, 406, 478
HphI GGTGA 3 cut(s) 67, 385, 511
Hpy188I TCNGA 3 cut(s) 349, 394, 471
Hpy188III TCNNGA 3 cut(s) 220, 250, 415
Hpy99I CGWCG 2 cut(s) 302, 349
HpyAV CCTTC 1 cut(s) 412
HpyCH4IV ACGT 5 cut(s) 15, 72, 276, 287, 344
HpyCH4V TGCA 5 cut(s) 84, 280, 285, 313, 364
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 104, 128, 265, 277, 291, 300
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 5 cut(s) 15, 72, 276, 287, 344
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 2 cut(s) 129, 271
KroI GCCGGC 3 cut(s) 48, 107, 234
KroNI GCCGGC 3 cut(s) 50, 109, 236
Ksp22I TGATCA 1 cut(s) 516
KspI CCGCGG 1 cut(s) 123
Kzo9I GATC 2 cut(s) 430, 516
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 5 cut(s) 118, 131, 134, 281, 297
MaeI CTAG 1 cut(s) 173
MaeII ACGT 5 cut(s) 15, 72, 276, 287, 344
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 432, 518
MboI GATC 2 cut(s) 430, 516
MboII GAAGA 4 cut(s) 10, 238, 254, 392
MlyI GAGTC 3 cut(s) 344, 395, 472
MmeI TCCRAC 3 cut(s) 327, 522, 528
MnlI CCTC 8 cut(s) 32, 46, 66, 216, 234, 376, 391, 493
MreI CGCCGGCG 2 cut(s) 48, 107
MroNI GCCGGC 3 cut(s) 48, 107, 234
MspA1I CMGCKG 1 cut(s) 122
MspR9I CCNGG 7 cut(s) 10, 40, 92, 179, 197, 305, 323
MvaI CCWGG 2 cut(s) 179, 305
MvnI CGCG 3 cut(s) 122, 216, 271
MwoI GCNNNNNNNGC 7 cut(s) 58, 104, 128, 265, 277, 291, 300
NaeI GCCGGC 3 cut(s) 50, 109, 236
NciI CCSGG 5 cut(s) 10, 40, 92, 197, 323
NdeII GATC 2 cut(s) 430, 516
NgoMIV GCCGGC 3 cut(s) 48, 107, 234
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 3 cut(s) 44, 115, 195
NmuCI GTSAC 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 413
PagI TCATGA 1 cut(s) 219
PdiI GCCGGC 3 cut(s) 50, 109, 236
PfeI GAWTC 1 cut(s) 406
PfoI TCCNGGA 1 cut(s) 38
PinAI ACCGGT 1 cut(s) 521
PleI GAGTC 3 cut(s) 343, 394, 472
PmaCI CACGTG 2 cut(s) 277, 288
PmlI CACGTG 2 cut(s) 277, 288
PpsI GAGTC 3 cut(s) 343, 394, 472
Ppu21I YACGTR 2 cut(s) 277, 288
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 177, 303
PspCI CACGTG 2 cut(s) 277, 288
PspGI CCWGG 2 cut(s) 177, 303
PspN4I GGNNCC 3 cut(s) 44, 115, 195
PspPI GGNCC 3 cut(s) 88, 114, 193
PspPPI RGGWCCY 1 cut(s) 193
PstI CTGCAG 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 207
SacII CCGCGG 1 cut(s) 123
Sau3AI GATC 2 cut(s) 430, 516
Sau96I GGNCC 3 cut(s) 88, 114, 193
SchI GAGTC 3 cut(s) 344, 395, 472
ScrFI CCNGG 7 cut(s) 10, 40, 92, 179, 197, 305, 323
SetI ASST 8 cut(s) 18, 75, 195, 279, 290, 312, 347, 414
SfcI CTRYAG 1 cut(s) 311
Sfr274I CTCGAG 1 cut(s) 413
Sfr303I CCGCGG 1 cut(s) 123
SgrAI CRCCGGYG 2 cut(s) 48, 107
SgrBI CCGCGG 1 cut(s) 123
SinI GGWCC 3 cut(s) 88, 114, 193
SlaI CTCGAG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 7 cut(s) 8, 38, 90, 177, 195, 303, 321
TaiI ACGT 5 cut(s) 18, 75, 279, 290, 347
TaqI TCGA 2 cut(s) 333, 414
TauI GCSGC 6 cut(s) 55, 122, 213, 216, 271, 294
TfiI GAWTC 1 cut(s) 406
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 5 cut(s) 131, 144, 147, 294, 310
Tsp45I GTSAC 1 cut(s) 73
TspRI CASTG 1 cut(s) 451
VpaK11BI GGWCC 3 cut(s) 88, 114, 193
XhoI CTCGAG 1 cut(s) 413
XspI CTAG 1 cut(s) 173
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.