Rmu_co8078510.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8078510.1
OG0013255
Physical Location & Seq
Reverse (-)
1 .. 516
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8078510.1_g000001.1.cds

Sequence Viewer

Length: 316 bp
atgaggaagaaccgccggcagaggctcatcaagaaagggcttcttccgccgcgccacgtgcaatgcacgtgcggctgcgacggcctggagctgcagttccacccggtcgggttcgagtcgctgacgtcggagttcaaggcggtgcagaagttggtgatggaagaggagtcgtctgacgaggatgtgattcagctcgagaaggagatgtgggatcggttttacggcactgggttttggagaagcccaactcagagagaaactccctccatctccaactccaactcaaactccaactccaactccaagatgatcagcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.14

Weight (kDa)

7.73

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11690 AT5G06380
fragaria_vesca FvH4_6g20920
malus_domestica MD12G1045100.v1.1 MD14G1044000.v1.1
prunus_persica Prupe.7G090300_v2.0.a1
pyrus_communis pycom14g03730
rosa_chinensis RchiOBHm_Chr3g0477261
rosa_laevigata RLG00000023732
rosa_multiflora Rmu_co8078510.1_g000001 Rmu_sc0000348.1_g000009
rosa_roxburghii Rroxscaffold_6G00404280 Rroxscaffold_6G00404760
rosa_rugosa Rorug03G0159400
rosa_samantha Rh3AG209700 Rh3BG243400
rosa_wichuraiana Rw0G000260 Rw0G021730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 128
AccII CGCG 1 cut(s) 52
AciI CCGC 5 cut(s) 13, 47, 50, 72, 140
AclWI GGATC 1 cut(s) 219
AcvI CACGTG 2 cut(s) 58, 69
AcyI GRCGYC 1 cut(s) 125
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 84
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 2 cut(s) 91, 193
AluI AGCT 2 cut(s) 91, 193
AlwI GGATC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 75, 91
AspLEI GCGC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 194
BbrPI CACGTG 2 cut(s) 58, 69
BbvI GCAGC 2 cut(s) 62, 78
BccI CCATC 2 cut(s) 151, 275
BceAI ACGGC 2 cut(s) 97, 238
BciT130I CCWGG 1 cut(s) 86
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 92
BisI GCNGC 4 cut(s) 50, 73, 76, 92
BlsI GCNGC 4 cut(s) 51, 74, 77, 93
Bme1390I CCNGG 2 cut(s) 86, 104
BmeT110I CYCGRG 1 cut(s) 194
BmrFI CCNGG 2 cut(s) 86, 104
BmrI ACTGGG 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 244, 276
BpmI CTGGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 104
BsaAI YACGTR 2 cut(s) 58, 69
BsaHI GRCGYC 1 cut(s) 125
BsaXI ACNNNNNCTCC 8 cut(s) 80, 110, 272, 278, 284, 302, 308, 314
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 62, 78
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 2 cut(s) 16, 104
BsnI GGCC 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 194
Bsp143I GATC 2 cut(s) 211, 309
BspACI CCGC 5 cut(s) 13, 47, 50, 72, 140
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 96
BspPI GGATC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 15
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 15
BssMI GATC 2 cut(s) 211, 309
BssNI GRCGYC 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 125
BstBAI YACGTR 2 cut(s) 58, 69
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 52
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 2 cut(s) 214, 312
BstMBI GATC 2 cut(s) 211, 309
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 4 cut(s) 46, 58, 72, 81
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 84, 102
BstSFI CTRYAG 1 cut(s) 92
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 62, 78
BsuRI GGCC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 17
CfoI GCGC 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 15
CviJI RGCY 7 cut(s) 25, 40, 75, 84, 91, 193, 243
CviKI_1 RGCY 7 cut(s) 25, 40, 75, 84, 91, 193, 243
DdeI CTNAG 1 cut(s) 249
DpnI GATC 2 cut(s) 213, 311
DpnII GATC 2 cut(s) 211, 309
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 36
Eco72I CACGTG 2 cut(s) 58, 69
Eco88I CYCGRG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 84
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 4 cut(s) 50, 73, 76, 92
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 4 cut(s) 50, 73, 76, 92
GlaI GCGC 1 cut(s) 53
GluI GCNGC 4 cut(s) 50, 73, 76, 92
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 84
HapII CCGG 2 cut(s) 16, 104
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 3 cut(s) 116, 167, 187
HpaII CCGG 2 cut(s) 16, 104
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 130, 175, 252
Hpy188III TCNNGA 2 cut(s) 31, 196
Hpy99I CGWCG 2 cut(s) 83, 130
HpyAV CCTTC 1 cut(s) 193
HpyCH4IV ACGT 3 cut(s) 57, 68, 125
HpyCH4V TGCA 4 cut(s) 61, 66, 94, 145
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 58, 72, 81
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 3 cut(s) 57, 68, 125
Hsp92I GRCGYC 1 cut(s) 125
HspAI GCGC 1 cut(s) 52
KroI GCCGGC 1 cut(s) 15
KroNI GCCGGC 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 2 cut(s) 211, 309
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 29, 71, 98, 117, 213
Lsp1109I GCAGC 2 cut(s) 62, 78
MaeII ACGT 3 cut(s) 57, 68, 125
MalI GATC 2 cut(s) 213, 311
MboI GATC 2 cut(s) 211, 309
MboII GAAGA 3 cut(s) 19, 35, 173
MlyI GAGTC 2 cut(s) 125, 176
MmeI TCCRAC 4 cut(s) 108, 297, 303, 315
MnlI CCTC 4 cut(s) 15, 157, 172, 274
MroNI GCCGGC 1 cut(s) 15
MspI CCGG 2 cut(s) 16, 104
MspR9I CCNGG 2 cut(s) 86, 104
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 4 cut(s) 46, 58, 72, 81
NaeI GCCGGC 1 cut(s) 17
NciI CCSGG 1 cut(s) 104
NdeII GATC 2 cut(s) 211, 309
NgoMIV GCCGGC 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 4 cut(s) 51, 74, 77, 93
PleI GAGTC 2 cut(s) 124, 175
PmaCI CACGTG 2 cut(s) 58, 69
PmlI CACGTG 2 cut(s) 58, 69
PpsI GAGTC 2 cut(s) 124, 175
Ppu21I YACGTR 2 cut(s) 58, 69
Psp6I CCWGG 1 cut(s) 84
PspCI CACGTG 2 cut(s) 58, 69
PspGI CCWGG 1 cut(s) 84
PstI CTGCAG 1 cut(s) 96
SatI GCNGC 4 cut(s) 50, 73, 76, 92
Sau3AI GATC 2 cut(s) 211, 309
SchI GAGTC 2 cut(s) 125, 176
ScrFI CCNGG 2 cut(s) 86, 104
SetI ASST 5 cut(s) 60, 71, 93, 128, 195
SfcI CTRYAG 1 cut(s) 92
Sfr274I CTCGAG 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SsiI CCGC 5 cut(s) 13, 47, 50, 72, 140
StyD4I CCNGG 2 cut(s) 84, 102
TaiI ACGT 3 cut(s) 60, 71, 128
TaqI TCGA 2 cut(s) 114, 195
TauI GCSGC 2 cut(s) 52, 75
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 1 cut(s) 232
TseI GCWGC 2 cut(s) 75, 91
TspRI CASTG 1 cut(s) 232
XhoI CTCGAG 1 cut(s) 194
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.