Rh3BG243400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0013255
Physical Location & Seq
Reverse (-)
22955854 .. 22960170
4317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG243400.1

Sequence Viewer

Length: 528 bp
ATGTCGTCCCGGCACGTCTTCCTCAGGCAAGCCTCCTCCGGGAACCGCCGGCGGCCTCTGCTTAAAACCCACGTCACCGACTGCAAGGACCGGGTGGCCGAAGTCGCCGGCGGGACCGCCGCCGAGTGCGCCGCCGTGTGTTGCTGCTGCCCATGCGGGCTGGTCAATCTGCTTGTCCTGGTAATCTACAAGGTCCCGGTCAGGCTCTGCCGCCGCGTCATGAGGAAGAACCGCCGGCAGAGGCTCATCAAGAAAGGGCTTCTTCCGCCGCGCCACGTGCAATGCACGTGCGGCTGCGACGGCCTGGAGCTGCAGTTCCACCCGGTCGGGTTCGAGTCGCTGACGTCGGAGTTCAAGGCGGTGCAGAAGTTGGTGATGGAAGAGGAGTCGTCTGACGAGGATTTAAATAATCAAAACTATTCATATTTTAGATCTATCAACCTAAACTATTCCGCAAGAAAGGATACCTACAATCAAACACAAATGGAACTTTGTCTTTCGAGGATATATACTGAAAGCTTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.94

Weight (kDa)

9.06

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11690 AT5G06380
fragaria_vesca FvH4_6g20920
malus_domestica MD12G1045100.v1.1 MD14G1044000.v1.1
prunus_persica Prupe.7G090300_v2.0.a1
pyrus_communis pycom14g03730
rosa_chinensis RchiOBHm_Chr3g0477261
rosa_laevigata RLG00000023732
rosa_multiflora Rmu_co8078510.1_g000001 Rmu_sc0000348.1_g000009
rosa_roxburghii Rroxscaffold_6G00404280 Rroxscaffold_6G00404760
rosa_rugosa Rorug03G0159400
rosa_samantha Rh3AG209700 Rh3BG243400
rosa_wichuraiana Rw0G000260 Rw0G021730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
AccII CGCG 2 cut(s) 216, 271
AcoI YGGCCR 1 cut(s) 96
AcvI CACGTG 2 cut(s) 277, 288
AcyI GRCGYC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 1 cut(s) 355
AjiI CACGTC 2 cut(s) 16, 73
AjnI CCWGG 2 cut(s) 177, 303
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 2 cut(s) 310, 519
AluI AGCT 2 cut(s) 310, 519
AlwNI CAGNNNCTG 1 cut(s) 207
AoxI GGCC 3 cut(s) 53, 96, 301
ApeKI GCWGC 4 cut(s) 144, 147, 294, 310
AspLEI GCGC 2 cut(s) 131, 273
AspS9I GGNCC 3 cut(s) 88, 114, 193
AsuC2I CCSGG 5 cut(s) 10, 40, 92, 197, 323
AsuHPI GGTGA 2 cut(s) 67, 385
AvaII GGWCC 3 cut(s) 88, 114, 193
AxyI CCTNAGG 1 cut(s) 23
BbrPI CACGTG 2 cut(s) 277, 288
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 4 cut(s) 131, 134, 281, 297
BccI CCATC 1 cut(s) 370
BceAI ACGGC 2 cut(s) 119, 316
BciT130I CCWGG 2 cut(s) 179, 305
BciVI GTATCC 1 cut(s) 457
BcnI CCSGG 5 cut(s) 10, 40, 92, 197, 323
BfmI CTRYAG 1 cut(s) 311
BfuI GTATCC 1 cut(s) 457
BglII AGATCT 1 cut(s) 431
Bme1390I CCNGG 7 cut(s) 10, 40, 92, 179, 197, 305, 323
Bme18I GGWCC 3 cut(s) 88, 114, 193
BmgBI CACGTC 2 cut(s) 16, 73
BmgT120I GGNCC 3 cut(s) 88, 114, 193
BmiI GGNNCC 3 cut(s) 44, 115, 195
BmrFI CCNGG 7 cut(s) 10, 40, 92, 179, 197, 305, 323
BpiI GAAGAC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 326
BpuMI CCSGG 5 cut(s) 10, 40, 92, 197, 323
BsaAI YACGTR 2 cut(s) 277, 288
BsaHI GRCGYC 1 cut(s) 344
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse118I RCCGGY 3 cut(s) 48, 107, 234
Bse21I CCTNAGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 179, 305
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 37
BseRI GAGGAG 2 cut(s) 25, 398
BseXI GCAGC 4 cut(s) 131, 134, 281, 297
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 2 cut(s) 216, 271
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 3 cut(s) 55, 98, 303
BsiEI CGRYCG 1 cut(s) 327
BsiSI CCGG 8 cut(s) 10, 39, 49, 91, 108, 197, 235, 323
BslFI GGGAC 2 cut(s) 127, 179
BslI CCNNNNNNNGG 1 cut(s) 39
BsmFI GGGAC 2 cut(s) 127, 179
BsnI GGCC 3 cut(s) 55, 98, 303
Bsp143I GATC 1 cut(s) 431
BspANI GGCC 3 cut(s) 55, 98, 303
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 2 cut(s) 216, 271
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 3 cut(s) 44, 115, 195
BspMAI CTGCAG 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 287
BsrFI RCCGGY 3 cut(s) 48, 107, 234
BssAI RCCGGY 3 cut(s) 48, 107, 234
BssMI GATC 1 cut(s) 431
BssNI GRCGYC 1 cut(s) 344
Bst2UI CCWGG 2 cut(s) 179, 305
Bst6I CTCTTC 1 cut(s) 375
BstACI GRCGYC 1 cut(s) 344
BstBAI YACGTR 2 cut(s) 277, 288
BstC8I GCNNGC 5 cut(s) 30, 50, 109, 158, 236
BstDEI CTNAG 2 cut(s) 23, 520
BstFNI CGCG 2 cut(s) 216, 271
BstHHI GCGC 2 cut(s) 131, 273
BstKTI GATC 1 cut(s) 434
BstMBI GATC 1 cut(s) 431
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 8 cut(s) 58, 104, 128, 153, 265, 277, 291, 300
BstNI CCWGG 2 cut(s) 179, 305
BstSCI CCNGG 7 cut(s) 8, 38, 90, 177, 195, 303, 321
BstSFI CTRYAG 1 cut(s) 311
BstUI CGCG 2 cut(s) 216, 271
BstV1I GCAGC 4 cut(s) 131, 134, 281, 297
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
Bsu36I CCTNAGG 1 cut(s) 23
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 3 cut(s) 55, 98, 303
BtrI CACGTC 2 cut(s) 16, 73
Cac8I GCNNGC 5 cut(s) 30, 50, 109, 158, 236
CaiI CAGNNNCTG 1 cut(s) 207
CciI TCATGA 1 cut(s) 219
CfoI GCGC 2 cut(s) 131, 273
Cfr10I RCCGGY 3 cut(s) 48, 107, 234
Cfr13I GGNCC 3 cut(s) 88, 114, 193
CseI GACGC 1 cut(s) 205
CviAII CATG 2 cut(s) 153, 220
DdeI CTNAG 2 cut(s) 23, 520
DpnI GATC 1 cut(s) 433
DpnII GATC 1 cut(s) 431
DraI TTTAAA 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 255
Eco47I GGWCC 3 cut(s) 88, 114, 193
Eco72I CACGTG 2 cut(s) 277, 288
Eco81I CCTNAGG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 177, 303
FaeI CATG 2 cut(s) 156, 223
FaiI YATR 5 cut(s) 154, 221, 424, 508, 510
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 2 cut(s) 127, 179
FatI CATG 2 cut(s) 152, 219
FauI CCCGC 2 cut(s) 104, 149
GlaI GCGC 2 cut(s) 130, 272
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 3 cut(s) 55, 98, 303
HapII CCGG 8 cut(s) 10, 39, 49, 91, 108, 197, 235, 323
HgaI GACGC 1 cut(s) 205
HhaI GCGC 2 cut(s) 131, 273
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 2 cut(s) 156, 223
Hin6I GCGC 2 cut(s) 129, 271
HinP1I GCGC 2 cut(s) 129, 271
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 2 cut(s) 335, 386
HpaII CCGG 8 cut(s) 10, 39, 49, 91, 108, 197, 235, 323
HphI GGTGA 2 cut(s) 67, 385
Hpy188I TCNGA 2 cut(s) 349, 394
Hpy188III TCNNGA 2 cut(s) 220, 250
Hpy99I CGWCG 2 cut(s) 302, 349
HpyCH4IV ACGT 5 cut(s) 15, 72, 276, 287, 344
HpyCH4V TGCA 5 cut(s) 84, 280, 285, 313, 364
HpyF10VI GCNNNNNNNGC 8 cut(s) 58, 104, 128, 153, 265, 277, 291, 300
HpyF3I CTNAG 2 cut(s) 23, 520
HpySE526I ACGT 5 cut(s) 15, 72, 276, 287, 344
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 2 cut(s) 156, 223
HspAI GCGC 2 cut(s) 129, 271
KroI GCCGGC 3 cut(s) 48, 107, 234
KroNI GCCGGC 3 cut(s) 50, 109, 236
Kzo9I GATC 1 cut(s) 431
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 4 cut(s) 131, 134, 281, 297
MaeII ACGT 5 cut(s) 15, 72, 276, 287, 344
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 433
MboI GATC 1 cut(s) 431
MboII GAAGA 4 cut(s) 10, 238, 254, 392
MflI RGATCY 1 cut(s) 431
MlyI GAGTC 2 cut(s) 344, 395
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 9 cut(s) 32, 43, 46, 66, 216, 234, 376, 391, 495
MreI CGCCGGCG 2 cut(s) 48, 107
MroNI GCCGGC 3 cut(s) 48, 107, 234
MseI TTAA 2 cut(s) 63, 404
MspI CCGG 8 cut(s) 10, 39, 49, 91, 108, 197, 235, 323
MspR9I CCNGG 7 cut(s) 10, 40, 92, 179, 197, 305, 323
MvaI CCWGG 2 cut(s) 179, 305
MvnI CGCG 2 cut(s) 216, 271
MwoI GCNNNNNNNGC 8 cut(s) 58, 104, 128, 153, 265, 277, 291, 300
NaeI GCCGGC 3 cut(s) 50, 109, 236
NciI CCSGG 5 cut(s) 10, 40, 92, 197, 323
NdeII GATC 1 cut(s) 431
NgoMIV GCCGGC 3 cut(s) 48, 107, 234
NlaIII CATG 2 cut(s) 156, 223
NlaIV GGNNCC 3 cut(s) 44, 115, 195
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 73
PagI TCATGA 1 cut(s) 219
PdiI GCCGGC 3 cut(s) 50, 109, 236
PfoI TCCNGGA 1 cut(s) 38
PleI GAGTC 2 cut(s) 343, 394
PmaCI CACGTG 2 cut(s) 277, 288
PmlI CACGTG 2 cut(s) 277, 288
PpsI GAGTC 2 cut(s) 343, 394
Ppu21I YACGTR 2 cut(s) 277, 288
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 177, 303
PspCI CACGTG 2 cut(s) 277, 288
PspGI CCWGG 2 cut(s) 177, 303
PspN4I GGNNCC 3 cut(s) 44, 115, 195
PspPI GGNCC 3 cut(s) 88, 114, 193
PspPPI RGGWCCY 1 cut(s) 193
PstI CTGCAG 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 207
PsuI RGATCY 1 cut(s) 431
SaqAI TTAA 2 cut(s) 63, 404
Sau3AI GATC 1 cut(s) 431
Sau96I GGNCC 3 cut(s) 88, 114, 193
SchI GAGTC 2 cut(s) 344, 395
ScrFI CCNGG 7 cut(s) 10, 40, 92, 179, 197, 305, 323
SfcI CTRYAG 1 cut(s) 311
SgrAI CRCCGGYG 2 cut(s) 48, 107
SinI GGWCC 3 cut(s) 88, 114, 193
SmiI ATTTAAAT 1 cut(s) 405
StyD4I CCNGG 7 cut(s) 8, 38, 90, 177, 195, 303, 321
SwaI ATTTAAAT 1 cut(s) 405
TaiI ACGT 5 cut(s) 18, 75, 279, 290, 347
TaqI TCGA 2 cut(s) 333, 500
TauI GCSGC 7 cut(s) 55, 122, 134, 213, 216, 271, 294
Tru1I TTAA 2 cut(s) 63, 404
Tru9I TTAA 2 cut(s) 63, 404
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 4 cut(s) 144, 147, 294, 310
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 411
VpaK11BI GGWCC 3 cut(s) 88, 114, 193
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.