Prupe.7G090300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013255
Physical Location & Seq
Forward (+)
12379315 .. 12381129
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G090300.1

Sequence Viewer

Length: 513 bp
ATGTCACAATCCATAACCTCATCGCGGCAACTCTTTCTCCGGCAGGTCTCCTGCAACCGCCGGCAGCCGCTGCTCCGGACCCAAGTCTCCCACAGCACTGTTCGATTGGCGGAAGTCGCCGGCGGCACCGCCGCCGAGTGCGCCGCCGTCTGCTGCTGCTGCCCGTGCGGGCTCGTCAACCTCCTCGTCCTGGTGATCTACAAGGTGCCGGCGGGGATCTGCCGGCGCGTCTTGAAGAAGAAGCGGCGCAAGAGGCACGTCAAGCAGGGGTTGTTGCAGCCCAGGCATTGCAACTGCACGTGCGGCTTCGACGGGTCGGAGCTCCAATTCCACCAAGTGGGTTTCGATTGCGGGTTGGAGATCAACGACATGTCGCATAAGGTCGCGGACGACGAGTCGGTTGATGAGGATGTGCTGAAGCTCGAGAAGGAGATGTGGGACAGGTTTTACAGCACTGGGTTTTGGAGAAGCCCATCCCAGAGAGAGCCCTCTAAGGTTCTCCCTGGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

8.99

Isoelectric Point (pI)

70.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11690 AT5G06380
fragaria_vesca FvH4_6g20920
malus_domestica MD12G1045100.v1.1 MD14G1044000.v1.1
prunus_persica Prupe.7G090300_v2.0.a1
pyrus_communis pycom14g03730
rosa_chinensis RchiOBHm_Chr3g0477261
rosa_laevigata RLG00000023732
rosa_multiflora Rmu_co8078510.1_g000001 Rmu_sc0000348.1_g000009
rosa_roxburghii Rroxscaffold_6G00404280 Rroxscaffold_6G00404760
rosa_rugosa Rorug03G0159400
rosa_samantha Rh3AG209700 Rh3BG243400
rosa_wichuraiana Rw0G000260 Rw0G021730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 34
AccB1I GGYRCC 2 cut(s) 125, 205
AccB7I CCANNNNNTGG 1 cut(s) 337
AccII CGCG 3 cut(s) 25, 228, 386
AccIII TCCGGA 1 cut(s) 75
AclWI GGATC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 437
AcvI CACGTG 1 cut(s) 300
AdeI CACNNNGTG 1 cut(s) 337
AfiI CCNNNNNNNGG 3 cut(s) 24, 190, 337
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 1 cut(s) 235
AhdI GACNNNNNGTC 1 cut(s) 394
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 3 cut(s) 189, 281, 502
AluBI AGCT 2 cut(s) 322, 421
AluI AGCT 2 cut(s) 322, 421
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 52, 91
AlwI GGATC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 422
Aor13HI TCCGGA 1 cut(s) 75
ApeKI GCWGC 6 cut(s) 64, 70, 153, 156, 159, 277
AspLEI GCGC 3 cut(s) 143, 228, 249
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 1 cut(s) 78
BanI GGYRCC 2 cut(s) 125, 205
BanII GRGCYC 3 cut(s) 174, 324, 489
BbrPI CACGTG 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 6 cut(s) 57, 76, 140, 143, 146, 289
BccI CCATC 1 cut(s) 481
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 3 cut(s) 191, 283, 504
BcoDI GTCTC 2 cut(s) 52, 91
BfuAI ACCTGC 1 cut(s) 34
Bme1390I CCNGG 3 cut(s) 191, 283, 504
Bme18I GGWCC 1 cut(s) 78
BmeRI GACNNNNNGTC 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 3 cut(s) 80, 127, 207
BmrFI CCNGG 3 cut(s) 191, 283, 504
BmrI ACTGGG 1 cut(s) 465
BmuI ACTGGG 1 cut(s) 465
BoxI GACNNNNGTC 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 281, 502
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 190, 337
Bse118I RCCGGY 4 cut(s) 60, 119, 208, 222
Bse1I ACTGG 1 cut(s) 460
Bse3DI GCAATG 1 cut(s) 286
BseAI TCCGGA 1 cut(s) 75
BseBI CCWGG 3 cut(s) 191, 283, 504
BseDI CCNNGG 2 cut(s) 281, 502
BseGI GGATG 2 cut(s) 415, 473
BseLI CCNNNNNNNGG 3 cut(s) 24, 190, 337
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 6 cut(s) 57, 76, 140, 143, 146, 289
BsgI GTGCAG 1 cut(s) 280
Bsh1236I CGCG 3 cut(s) 25, 228, 386
BshNI GGYRCC 2 cut(s) 125, 205
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 6 cut(s) 40, 61, 76, 120, 209, 223
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 3 cut(s) 24, 190, 337
BsmAI GTCTC 2 cut(s) 52, 91
BsmFI GGGAC 1 cut(s) 452
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 3 cut(s) 174, 324, 489
Bsp13I TCCGGA 1 cut(s) 75
Bsp143I GATC 3 cut(s) 195, 216, 360
BspEI TCCGGA 1 cut(s) 75
BspFNI CGCG 3 cut(s) 25, 228, 386
BspLI GGNNCC 3 cut(s) 80, 127, 207
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 2 cut(s) 125, 205
BspTNI GGTCTC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 4 cut(s) 60, 119, 208, 222
BsrI ACTGG 1 cut(s) 460
BssAI RCCGGY 4 cut(s) 60, 119, 208, 222
BssECI CCNNGG 2 cut(s) 281, 502
BssMI GATC 3 cut(s) 195, 216, 360
Bst2UI CCWGG 3 cut(s) 191, 283, 504
Bst4CI ACNGT 1 cut(s) 100
BstAPI GCANNNNNTGC 1 cut(s) 70
BstBAI YACGTR 1 cut(s) 300
BstC8I GCNNGC 5 cut(s) 62, 121, 170, 210, 224
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 2 cut(s) 415, 473
BstFNI CGCG 3 cut(s) 25, 228, 386
BstHHI GCGC 3 cut(s) 143, 228, 249
BstKTI GATC 3 cut(s) 198, 219, 363
BstMAI GTCTC 2 cut(s) 52, 91
BstMBI GATC 3 cut(s) 195, 216, 360
BstMWI GCNNNNNNNGC 9 cut(s) 70, 116, 140, 159, 165, 253, 262, 283, 303
BstNI CCWGG 3 cut(s) 191, 283, 504
BstNSI RCATGY 1 cut(s) 373
BstPAI GACNNNNGTC 1 cut(s) 83
BstSCI CCNGG 3 cut(s) 189, 281, 502
BstUI CGCG 3 cut(s) 25, 228, 386
BstV1I GCAGC 6 cut(s) 57, 76, 140, 143, 146, 289
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 2 cut(s) 415, 473
BtsIMutI CAGTG 2 cut(s) 96, 453
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 5 cut(s) 62, 121, 170, 210, 224
CaiI CAGNNNCTG 1 cut(s) 70
CfoI GCGC 3 cut(s) 143, 228, 249
Cfr10I RCCGGY 4 cut(s) 60, 119, 208, 222
Cfr13I GGNCC 1 cut(s) 78
CseI GACGC 1 cut(s) 217
CviAII CATG 1 cut(s) 370
CviJI RGCY 8 cut(s) 67, 172, 280, 306, 322, 421, 471, 487
CviKI_1 RGCY 8 cut(s) 67, 172, 280, 306, 322, 421, 471, 487
DdeI CTNAG 1 cut(s) 492
DpnI GATC 3 cut(s) 197, 218, 362
DpnII GATC 3 cut(s) 195, 216, 360
DraIII CACNNNGTG 1 cut(s) 337
DriI GACNNNNNGTC 1 cut(s) 394
Eam1105I GACNNNNNGTC 1 cut(s) 394
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 3 cut(s) 174, 324, 489
Eco31I GGTCTC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 437
Eco72I CACGTG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 322
EcoRII CCWGG 3 cut(s) 189, 281, 502
EcoT38I GRGCYC 3 cut(s) 174, 324, 489
FaeI CATG 1 cut(s) 373
FaiI YATR 5 cut(s) 14, 371, 378, 509, 511
FaqI GGGAC 1 cut(s) 452
FatI CATG 1 cut(s) 369
FauI CCCGC 3 cut(s) 161, 205, 344
FokI GGATG 2 cut(s) 422, 460
FriOI GRGCYC 3 cut(s) 174, 324, 489
GlaI GCGC 3 cut(s) 142, 227, 248
HapII CCGG 6 cut(s) 40, 61, 76, 120, 209, 223
HgaI GACGC 1 cut(s) 217
HhaI GCGC 3 cut(s) 143, 228, 249
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 3 cut(s) 141, 226, 247
HinP1I GCGC 3 cut(s) 141, 226, 247
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 395
HpaII CCGG 6 cut(s) 40, 61, 76, 120, 209, 223
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 3 cut(s) 76, 232, 424
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 2 cut(s) 314, 395
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 258, 299
HpyCH4V TGCA 4 cut(s) 54, 277, 291, 297
HpyF10VI GCNNNNNNNGC 9 cut(s) 70, 116, 140, 159, 165, 253, 262, 283, 303
HpyF3I CTNAG 1 cut(s) 492
HpySE526I ACGT 2 cut(s) 258, 299
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 3 cut(s) 141, 226, 247
Kpn2I TCCGGA 1 cut(s) 75
KroI GCCGGC 4 cut(s) 60, 119, 208, 222
KroNI GCCGGC 4 cut(s) 62, 121, 210, 224
Kzo9I GATC 3 cut(s) 195, 216, 360
LmnI GCTCC 3 cut(s) 78, 319, 327
Lsp1109I GCAGC 6 cut(s) 57, 76, 140, 143, 146, 289
MaeII ACGT 2 cut(s) 258, 299
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 197, 218, 362
MboI GATC 3 cut(s) 195, 216, 360
MboII GAAGA 2 cut(s) 247, 250
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 3 cut(s) 174, 324, 489
MluCI AATT 1 cut(s) 326
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 2 cut(s) 297, 336
MnlI CCTC 6 cut(s) 28, 191, 194, 246, 400, 499
MreI CGCCGGCG 1 cut(s) 119
MroI TCCGGA 1 cut(s) 75
MroNI GCCGGC 4 cut(s) 60, 119, 208, 222
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 6 cut(s) 40, 61, 76, 120, 209, 223
MspR9I CCNGG 3 cut(s) 191, 283, 504
MvaI CCWGG 3 cut(s) 191, 283, 504
MvnI CGCG 3 cut(s) 25, 228, 386
MwoI GCNNNNNNNGC 9 cut(s) 70, 116, 140, 159, 165, 253, 262, 283, 303
NaeI GCCGGC 4 cut(s) 62, 121, 210, 224
NdeII GATC 3 cut(s) 195, 216, 360
NgoMIV GCCGGC 4 cut(s) 60, 119, 208, 222
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 3 cut(s) 80, 127, 207
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 373
PaeR7I CTCGAG 1 cut(s) 422
PciI ACATGT 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdiI GCCGGC 4 cut(s) 62, 121, 210, 224
PflMI CCANNNNNTGG 1 cut(s) 337
PleI GAGTC 1 cut(s) 403
PmaCI CACGTG 1 cut(s) 300
PmlI CACGTG 1 cut(s) 300
PpsI GAGTC 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 300
PscI ACATGT 1 cut(s) 369
PshAI GACNNNNGTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 3 cut(s) 189, 281, 502
PspCI CACGTG 1 cut(s) 300
PspGI CCWGG 3 cut(s) 189, 281, 502
PspN4I GGNNCC 3 cut(s) 80, 127, 207
PspPI GGNCC 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 70
PsuI RGATCY 1 cut(s) 216
SacI GAGCTC 1 cut(s) 324
Sau3AI GATC 3 cut(s) 195, 216, 360
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 3 cut(s) 191, 283, 504
SduI GDGCHC 3 cut(s) 174, 324, 489
Sfr274I CTCGAG 1 cut(s) 422
SgrAI CRCCGGYG 1 cut(s) 119
SinI GGWCC 1 cut(s) 78
SlaI CTCGAG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 1 cut(s) 326
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 3 cut(s) 189, 281, 502
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 261, 302
TaqI TCGA 4 cut(s) 103, 309, 345, 423
TasI AATT 1 cut(s) 326
TauI GCSGC 7 cut(s) 28, 70, 126, 134, 146, 247, 306
TscAI CASTG 2 cut(s) 103, 460
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 6 cut(s) 64, 70, 153, 156, 159, 277
Tsp45I GTSAC 1 cut(s) 3
TspRI CASTG 2 cut(s) 103, 460
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 78
XceI RCATGY 1 cut(s) 373
XhoI CTCGAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.