AT3G12280

retinoblastoma-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003674
Physical Location & Seq
Reverse (-)
3913349 .. 3919359
6011 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12280.1

Sequence Viewer

Length: 3042 bp
ATGGAAGAAGTTCAGCCTCCAGTGACCCCGCCCATTGAACCAAATGGGAAAAGAAGCGAAGCCTCTCTCTTGGACATATGCGAGAAAGTTCTGTCTCTTGATGGGAGCACTTGCGATGAAGCTTTGAAGTTGTTTACAGAAACCAAACGAATTTTGTCAGCAAGCATGTCTAACATTGGAAGTGGAACGCGGGAAGAAGTAGAGAGGTTCTGGTTTGCGTTTATTCTCTATTCAGTGAAGAGGCTTAGTGTGAGAAAAGAAGCGGATGGTCTGTCAGTGTCTGGTGATAATGAGTTTAATCTATGTCAGATACTGAGGGCTCTGAAGCTAAATATTGTGGATTTTTTTAAAGAGTTACCTCAGTTTGTGGTCAAGGCTGGATCTGTACTGGGTGAACTTTACGGCGCAGACTGGGAGAACAGACTTCAGGCAAAGGAGGTGCAGGCTAACTTTGTGCATCTTAGCCTTCTAAGCAAATACTACAAACGTGGGTTCCGGGAATTCTTTTTGACATATGATGCAAACGCAGAAAAGAACTCAGCAAACTCTTCTACCTATTTGCTGGATAGTTATCGTTTTGGATGGCTACTCTTTTTGGCACTCCGAAACCATGCGTTTAGTCGATTTAAGGACCTCGTGACATGCTCAAATGGCGTAGTTTCTATATTGGCTATTTTGATCATACATGTTCCTTGTCGGTTTAGAAATTTCAGCATCCAAGATTCTTCTCGCTTTGTTAAGAAAGGTGACAAAGGTGTAGACTTGGTTGCATCACTTTGCAAGATATATGACGCCTCAGAAGATGAGTTGAGGATAGTAATTGACAAGGCAAATAATTTGGTAGAAACCATACTGAAGAAAAAGCCATCTCCAGCATCTGAGTGCCAAACTGACAAGCTAGATAATATTGACCCAGATGGCTTGACCTACTTTGAGGATTTACTGGAAGAGACGTCCATCTCAACTAGCTTAATTACACTTGAAAAGGATTACTATGATGGTAAAGGCGAACTTGATGAGAGGGTATTCATCAATGAAGAGGATAGCTTACTTGGATCTGGAAGCTTATCTGCAGGAGCTGTTAATATTACTGGTGTTAAGAGGAAAATTGATGCTTTGAGCTCACCTGCAAGGACATTTATAAGCCCACTTTCTCCTCATAAGTCGCCTGCTGCTAAGACAAATGGTATTAGCGGTGCTACCAAGTTGGCAGCAACACCAGTGAGCACAGCAATGACAACTGCCAAGTGGCTCAGGACTGTCATATCCCCGCTTCTGCCAAAACCTTCTCCTGGGTTGGAACATTTCCTTAAATCATGTGATAGGGATATAACAAATGACGTCACACGAAGAGCACACATAATATTGGAAGCTATTTTCCCAAATAGTTCCCTTGGTGCCCAATGTGGAGGTGGAAGTTTGCAAGCTGTTGACCTGATGGATGACATATGGGCAGAGCAGCGCAGATTAGAAGCTTGTAAGTTATACTACAGAGTTCTTGAGGCAATGTGTAAAGCAGAAGCTCAGATTTTGCATGCAAATAATCTGAACTCTTTATTGACAAATGAGAGGTTCCATAGATGCATGCTTGCTTGCTCAGCTGAATTGGTACTGGCTACCCACAAAACAATTACAATGTTGTTCCCAGCTGTTCTGGAGAGGACTGGGATCACAGCCTTTGATCTCAGCAAGGTAATTGAGAGTTTCATACGACATGAAGATTCTCTGCCTAGAGAGTTGAGACGACATCTGAATTCACTGGAGGAACGGCTTCTAGAGAGTATGGTATGGGAGAAAGGCTCTTCAATGTACAATTCTCTGATTGTTGCCAGGCCATCGCTTGCATTGGAGATAAATCAGCTCGGTTTACTAGCTGAACCAATGCCATCTCTGGATGCAATCGCAGCACTTATTAATTTCTCTGACGGAGCAAATCATGCATCATCTGTACAAAAGCATGAAACTTGTCCAGGACAAAATGGGGGGATTAGATCGCCCAAAAGATTATGTACTGATTACCGCAGCATTCTAGTTGAACGCAATTCCTTTACATCACCAGTAAAGGATCGTCTGTTGGCCTTAGGCAACGTTAAATCCAAGATGCTGCCACCTCCGTTGCAGTCTGCATTTGCCAGCCCAACACGGCCCAACCCAGGAGGTGGAGGAGAAACTTGTGCAGAAACTGGAATCAATATTTTCTTCACAAAGATTAATAAATTGGCTGCTGTAAGAATCAATGGAATGGTGGAAAGACTACAACTTTCACAGCAAATAAGGGAGAGTGTGTATTGTTTCTTCCAACATGTACTTGCTCAGCGGACTTCTCTTTTATTCAGTCGACACATTGACCAGATCATTCTCTGTTGCTTCTACGGAGTGGCCAAGATATCCCAAATGAGCCTGACTTTCAGGGAAATCATATACAACTACCGGAAGCAACCACAGTGTAAACCATTAGTTTTCCGCAGCGTTTATGTGGATGCGTTACAATGTCGCCGTCAAGGGAGAATAGGGCCAGATCATGTTGACATCATCACATTCTACAATGAAATATTTATTCCTGCCGTAAAGCCGCTGCTGGTGGAGCTAGGTCCTGTAAGAAACGACCGGGCTGTGGAAGCCAATAATAAGCCTGAAGGTCAATGTCCCGGATCGCCAAAGGTGTCTGTGTTTCCAAGTGTTCCAGACATGTCCCCTAAAAAAGTATCTGCAGTGCACAATGTTTATGTTTCTCCTCTTCGGGGATCAAAGATGGATGCTCTTATTTCACACAGTACAAAGAGTTACTATGCTTGTGTTGGAGAGAGTACACATGCTTACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAACAGCAGCAGCAACCGCAAGAGGACGCTAAACTTTGACGCAGAAGCAGGGATGGTCAGCGATTCCATGGTAGCAAATAGCCTTAACCTCCAAAACCAAAATCAAAACCAAAATGGAAGCGATGCATCGTCCTCAGGTGGTGCCGCACCCCTTAAAACCGAGCCAACAGATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653
KEGG Pathways
Metabolic & Signaling
ko04110 ko04218 ko04350 ko05165 ko05203 map04110 map04218 map04350 map05165 map05203
Pfam Domains
Protein Families
DUF3452 RB_A RB_B Rb_C

Protein Analysis

1013

Amino Acids

112.17

Weight (kDa)

8.17

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3452 PF11934 94 - 229 3.5e-35 Domain of unknown function (DUF3452)
RB_A PF01858 406 - 607 3.3e-64 Retinoblastoma-associated protein A domain
RB_B PF01857 730 - 857 1.7e-40 Retinoblastoma-associated protein B domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1142
AarI CACCTGC 1 cut(s) 1135
AatII GACGTC 2 cut(s) 956, 1344
Acc36I ACCTGC 1 cut(s) 1135
AccB1I GGYRCC 2 cut(s) 1397, 3005
AccB7I CCANNNNNTGG 1 cut(s) 2159
AccI GTMKAC 2 cut(s) 759, 2338
AccII CGCG 1 cut(s) 190
AclI AACGTT 1 cut(s) 2088
AclWI GGATC 6 cut(s) 388, 1063, 1676, 2073, 2659, 2752
AcoI YGGCCR 1 cut(s) 2379
AcsI RAATTY 4 cut(s) 150, 500, 706, 1753
AcuI CTGAAG 4 cut(s) 344, 410, 875, 2655
AcyI GRCGYC 3 cut(s) 792, 953, 1341
AfaI GTAC 8 cut(s) 387, 1611, 1811, 1950, 2011, 2307, 2776, 2809
AfiI CCNNNNNNNGG 6 cut(s) 1292, 2153, 2159, 2614, 2741, 2833
AflIII ACRYGT 3 cut(s) 685, 2302, 2688
AgsI TTSAA 7 cut(s) 38, 127, 983, 1806, 2036, 2832, 2863
AjnI CCWGG 4 cut(s) 1291, 1829, 1969, 2152
Alw21I GWGCWC 5 cut(s) 110, 1124, 1229, 1357, 2718
Alw26I GTCTC 3 cut(s) 99, 944, 1735
Alw44I GTGCAC 1 cut(s) 2714
AlwI GGATC 6 cut(s) 388, 1063, 1676, 2073, 2659, 2752
AlwNI CAGNNNCTG 5 cut(s) 281, 313, 878, 1079, 2183
AoxI GGCC 5 cut(s) 1832, 2076, 2144, 2379, 2513
ApaLI GTGCAC 1 cut(s) 2714
ApoI RAATTY 4 cut(s) 150, 500, 706, 1753
AseI ATTAAT 2 cut(s) 1914, 2211
Asp700I GAANNNNTTC 2 cut(s) 9, 1770
AspLEI GCGC 2 cut(s) 407, 1464
AspS9I GGNCC 5 cut(s) 631, 2145, 2513, 2591, 2836
AsuC2I CCSGG 3 cut(s) 497, 2609, 2649
AsuHPI GGTGA 5 cut(s) 296, 404, 758, 1116, 2046
AvaII GGWCC 3 cut(s) 631, 2591, 2836
AxyI CCTNAGG 2 cut(s) 2080, 2998
BaeGI GKGCMC 2 cut(s) 1402, 2718
BalI TGGCCA 1 cut(s) 2381
BanI GGYRCC 2 cut(s) 1397, 3005
BanII GRGCYC 3 cut(s) 322, 1124, 2828
BarI GAAGNNNNNNTAC 2 cut(s) 2279, 2311
BauI CACGAG 1 cut(s) 635
Bbv12I GWGCWC 5 cut(s) 110, 1124, 1229, 1357, 2718
BceAI ACGGC 5 cut(s) 418, 1784, 2159, 2481, 2549
BciT130I CCWGG 4 cut(s) 1293, 1831, 1971, 2154
BclI TGATCA 1 cut(s) 678
BcnI CCSGG 3 cut(s) 497, 2609, 2649
BcoDI GTCTC 3 cut(s) 99, 944, 1735
BfaI CTAG 7 cut(s) 899, 966, 1731, 1775, 1871, 2030, 2588
BfmI CTRYAG 3 cut(s) 1071, 1489, 2709
BfuAI ACCTGC 1 cut(s) 1135
BlpI GCTNAGC 2 cut(s) 1597, 2313
Bme1390I CCNGG 7 cut(s) 497, 1293, 1831, 1971, 2154, 2609, 2649
Bme18I GGWCC 3 cut(s) 631, 2591, 2836
BmgT120I GGNCC 5 cut(s) 631, 2145, 2513, 2591, 2836
BmiI GGNNCC 4 cut(s) 494, 1399, 1574, 3007
BmrFI CCNGG 7 cut(s) 497, 1293, 1831, 1971, 2154, 2609, 2649
BmrI ACTGGG 3 cut(s) 398, 421, 1674
BmuI ACTGGG 3 cut(s) 398, 421, 1674
BplI GAGNNNNNCTC 2 cut(s) 1784, 1816
BpmI CTGGAG 3 cut(s) 855, 1676, 1781
Bpu10I CCTNAGC 1 cut(s) 1253
Bpu1102I GCTNAGC 2 cut(s) 1597, 2313
BpuEI CTTGAG 1 cut(s) 1520
BpuMI CCSGG 3 cut(s) 497, 2609, 2649
BsaBI GATNNNNATC 1 cut(s) 570
BsaHI GRCGYC 3 cut(s) 792, 953, 1341
BsaJI CCNNGG 4 cut(s) 1292, 1393, 2152, 2931
BsaWI WCCGGW 1 cut(s) 2430
BsaXI ACNNNNNCTCC 2 cut(s) 2270, 2300
Bsc4I CCNNNNNNNGG 6 cut(s) 1292, 2153, 2159, 2614, 2741, 2833
Bse21I CCTNAGG 2 cut(s) 2080, 2998
Bse3DI GCAATG 2 cut(s) 1239, 1512
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 4 cut(s) 1293, 1831, 1971, 2154
BseDI CCNNGG 4 cut(s) 1292, 1393, 2152, 2931
BseGI GGATG 8 cut(s) 271, 587, 714, 1447, 1900, 2485, 2761, 2922
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 6 cut(s) 1292, 2153, 2159, 2614, 2741, 2833
BseMI GCAATG 2 cut(s) 1239, 1512
BseRI GAGGAG 3 cut(s) 1146, 2178, 2724
BseSI GKGCMC 2 cut(s) 1402, 2718
BseYI CCCAGC 1 cut(s) 1645
BsgI GTGCAG 2 cut(s) 461, 2196
Bsh1236I CGCG 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 2608
BshFI GGCC 5 cut(s) 1834, 2078, 2146, 2381, 2515
BshNI GGYRCC 2 cut(s) 1397, 3005
BsiEI CGRYCG 1 cut(s) 2608
BsiHKAI GWGCWC 5 cut(s) 110, 1124, 1229, 1357, 2718
BsiSI CCGG 4 cut(s) 496, 2431, 2608, 2649
BslFI GGGAC 2 cut(s) 2631, 2677
BslI CCNNNNNNNGG 6 cut(s) 1292, 2153, 2159, 2614, 2741, 2833
BsmAI GTCTC 3 cut(s) 99, 944, 1735
BsmBI CGTCTC 2 cut(s) 944, 1735
BsmFI GGGAC 2 cut(s) 2631, 2677
BsmI GAATGC 1 cut(s) 2025
BsnI GGCC 5 cut(s) 1834, 2078, 2146, 2381, 2515
Bsp1286I GDGCHC 8 cut(s) 110, 322, 1124, 1229, 1357, 1402, 2718, 2828
Bsp1407I TGTACA 2 cut(s) 1809, 1948
Bsp1720I GCTNAGC 2 cut(s) 1597, 2313
Bsp19I CCATGG 1 cut(s) 2931
BspANI GGCC 5 cut(s) 1834, 2078, 2146, 2381, 2515
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 4 cut(s) 494, 1399, 1574, 3007
BspMAI CTGCAG 2 cut(s) 1075, 2713
BspMI ACCTGC 1 cut(s) 1135
BspPI GGATC 6 cut(s) 388, 1063, 1676, 2073, 2659, 2752
BspQI GCTCTTC 2 cut(s) 1345, 1807
BspT107I GGYRCC 2 cut(s) 1397, 3005
BsrDI GCAATG 2 cut(s) 1239, 1512
BsrGI TGTACA 2 cut(s) 1809, 1948
BssECI CCNNGG 4 cut(s) 1292, 1393, 2152, 2931
BssNI GRCGYC 3 cut(s) 792, 953, 1341
BssSI CACGAG 1 cut(s) 635
BssT1I CCWWGG 2 cut(s) 1393, 2931
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 4 cut(s) 1293, 1831, 1971, 2154
Bst4CI ACNGT 3 cut(s) 1261, 2445, 2774
Bst6I CTCTTC 7 cut(s) 233, 553, 942, 1032, 1345, 1807, 2742
BstACI GRCGYC 3 cut(s) 792, 953, 1341
BstAPI GCANNNNNTGC 1 cut(s) 1937
BstAUI TGTACA 2 cut(s) 1809, 1948
BstDSI CCRYGG 1 cut(s) 2931
BstF5I GGATG 8 cut(s) 271, 587, 714, 1447, 1900, 2485, 2761, 2922
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 2 cut(s) 407, 1464
BstMAI GTCTC 3 cut(s) 99, 944, 1735
BstMCI CGRYCG 1 cut(s) 2608
BstMWI GCNNNNNNNGC 8 cut(s) 471, 651, 1598, 1904, 1937, 2584, 2618, 2880
BstNI CCWGG 4 cut(s) 1293, 1831, 1971, 2154
BstNSI RCATGY 8 cut(s) 169, 645, 689, 1538, 1588, 2306, 2692, 2816
BstSCI CCNGG 7 cut(s) 495, 1291, 1829, 1969, 2152, 2607, 2647
BstSFI CTRYAG 3 cut(s) 1071, 1489, 2709
BstSLI GKGCMC 2 cut(s) 1402, 2718
BstUI CGCG 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 380, 1055
BstYI RGATCY 2 cut(s) 380, 1055
Bsu36I CCTNAGG 2 cut(s) 2080, 2998
BsuRI GGCC 5 cut(s) 1834, 2078, 2146, 2381, 2515
BtgI CCRYGG 1 cut(s) 2931
BtgZI GCGATG 3 cut(s) 129, 1821, 3000
BtsCI GGATG 8 cut(s) 271, 587, 714, 1447, 1900, 2485, 2761, 2922
BtsI GCAGTG 1 cut(s) 2718
BtsIMutI CAGTG 7 cut(s) 27, 240, 282, 1227, 1757, 2450, 2718
BveI ACCTGC 1 cut(s) 1135
CaiI CAGNNNCTG 5 cut(s) 281, 313, 878, 1079, 2183
CfoI GCGC 2 cut(s) 407, 1464
Cfr13I GGNCC 5 cut(s) 631, 2145, 2513, 2591, 2836
CseI GACGC 3 cut(s) 800, 2899, 2912
Csp6I GTAC 8 cut(s) 386, 1610, 1810, 1949, 2010, 2306, 2775, 2808
CspCI CAANNNNNGTGG 2 cut(s) 2097, 2132
CviQI GTAC 8 cut(s) 386, 1610, 1810, 1949, 2010, 2306, 2775, 2808
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 2379
Eam1104I CTCTTC 7 cut(s) 233, 553, 942, 1032, 1345, 1807, 2742
EarI CTCTTC 7 cut(s) 233, 553, 942, 1032, 1345, 1807, 2742
Ecl136II GAGCTC 1 cut(s) 1122
Eco130I CCWWGG 2 cut(s) 1393, 2931
Eco24I GRGCYC 3 cut(s) 322, 1124, 2828
Eco32I GATATC 1 cut(s) 2388
Eco47I GGWCC 3 cut(s) 631, 2591, 2836
Eco53kI GAGCTC 1 cut(s) 1122
Eco57I CTGAAG 4 cut(s) 344, 410, 875, 2655
Eco81I CCTNAGG 2 cut(s) 2080, 2998
EcoICRI GAGCTC 1 cut(s) 1122
EcoO109I RGGNCCY 3 cut(s) 631, 2591, 2836
EcoRI GAATTC 2 cut(s) 500, 1753
EcoRII CCWGG 4 cut(s) 1291, 1829, 1969, 2152
EcoRV GATATC 1 cut(s) 2388
EcoT14I CCWWGG 2 cut(s) 1393, 2931
EcoT22I ATGCAT 3 cut(s) 1586, 1942, 2992
EcoT38I GRGCYC 3 cut(s) 322, 1124, 2828
ErhI CCWWGG 2 cut(s) 1393, 2931
Esp3I CGTCTC 2 cut(s) 944, 1735
FalI AAGNNNNNCTT 2 cut(s) 996, 1028
FaqI GGGAC 2 cut(s) 2631, 2677
FauI CCCGC 3 cut(s) 36, 183, 1278
FauNDI CATATG 3 cut(s) 77, 514, 1448
FbaI TGATCA 1 cut(s) 678
FblI GTMKAC 2 cut(s) 759, 2338
FokI GGATG 8 cut(s) 278, 594, 701, 1454, 1907, 2492, 2768, 2929
FriOI GRGCYC 3 cut(s) 322, 1124, 2828
FspBI CTAG 7 cut(s) 899, 966, 1731, 1775, 1871, 2030, 2588
GlaI GCGC 2 cut(s) 406, 1463
GsaI CCCAGC 1 cut(s) 1649
GsuI CTGGAG 3 cut(s) 855, 1676, 1781
HaeIII GGCC 5 cut(s) 1834, 2078, 2146, 2381, 2515
HapII CCGG 4 cut(s) 496, 2431, 2608, 2649
HgaI GACGC 3 cut(s) 800, 2899, 2912
HhaI GCGC 2 cut(s) 407, 1464
Hin1I GRCGYC 3 cut(s) 792, 953, 1341
Hin6I GCGC 2 cut(s) 405, 1462
HinP1I GCGC 2 cut(s) 405, 1462
HincII GTYRAC 3 cut(s) 1432, 2339, 2527
HindII GTYRAC 3 cut(s) 1432, 2339, 2527
HindIII AAGCTT 3 cut(s) 120, 1063, 1473
HinfI GANTC 6 cut(s) 722, 1721, 2187, 2232, 2927, 3035
HpaII CCGG 4 cut(s) 496, 2431, 2608, 2649
HphI GGTGA 5 cut(s) 296, 404, 758, 1116, 2046
Hpy188III TCNNGA 9 cut(s) 98, 637, 1059, 1255, 1499, 1655, 1775, 1892, 2684
HpyAV CCTTC 4 cut(s) 476, 1296, 2630, 2838
HpyCH4III ACNGT 3 cut(s) 1261, 2445, 2774
HpyCH4IV ACGT 4 cut(s) 487, 953, 1341, 2088
HpyF10VI GCNNNNNNNGC 8 cut(s) 471, 651, 1598, 1904, 1937, 2584, 2618, 2880
HpySE526I ACGT 4 cut(s) 487, 953, 1341, 2088
Hsp92I GRCGYC 3 cut(s) 792, 953, 1341
HspAI GCGC 2 cut(s) 405, 1462
Ksp22I TGATCA 1 cut(s) 678
LguI GCTCTTC 2 cut(s) 1345, 1807
LmnI GCTCC 4 cut(s) 105, 1076, 1928, 2584
MaeI CTAG 7 cut(s) 899, 966, 1731, 1775, 1871, 2030, 2588
MaeII ACGT 4 cut(s) 487, 953, 1341, 2088
MaeIII GTNAC 7 cut(s) 22, 354, 637, 746, 1342, 2484, 2783
MflI RGATCY 2 cut(s) 380, 1055
MhlI GDGCHC 8 cut(s) 110, 322, 1124, 1229, 1357, 1402, 2718, 2828
MlsI TGGCCA 1 cut(s) 2381
MluNI TGGCCA 1 cut(s) 2381
MmeI TCCRAC 3 cut(s) 1278, 2323, 2779
Mox20I TGGCCA 1 cut(s) 2381
Mph1103I ATGCAT 3 cut(s) 1586, 1942, 2992
MroXI GAANNNNTTC 2 cut(s) 9, 1770
MscI TGGCCA 1 cut(s) 2381
MslI CAYNNNNRTG 2 cut(s) 880, 1232
Msp20I TGGCCA 1 cut(s) 2381
MspA1I CMGCKG 4 cut(s) 1601, 1649, 2317, 2575
MspI CCGG 4 cut(s) 496, 2431, 2608, 2649
MspR9I CCNGG 7 cut(s) 497, 1293, 1831, 1971, 2154, 2609, 2649
Mva1269I GAATGC 1 cut(s) 2025
MvaI CCWGG 4 cut(s) 1293, 1831, 1971, 2154
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 8 cut(s) 471, 651, 1598, 1904, 1937, 2584, 2618, 2880
NciI CCSGG 3 cut(s) 497, 2609, 2649
NcoI CCATGG 1 cut(s) 2931
NdeI CATATG 3 cut(s) 77, 514, 1448
NlaIV GGNNCC 4 cut(s) 494, 1399, 1574, 3007
NmuCI GTSAC 4 cut(s) 22, 637, 746, 1342
NsiI ATGCAT 3 cut(s) 1586, 1942, 2992
NspI RCATGY 8 cut(s) 169, 645, 689, 1538, 1588, 2306, 2692, 2816
PaeI GCATGC 2 cut(s) 1538, 1588
PaqCI CACCTGC 1 cut(s) 1135
PciI ACATGT 3 cut(s) 685, 2302, 2688
PciSI GCTCTTC 2 cut(s) 1345, 1807
PctI GAATGC 1 cut(s) 2025
PdmI GAANNNNTTC 2 cut(s) 9, 1770
PfeI GAWTC 6 cut(s) 722, 1721, 2187, 2232, 2927, 3035
PflMI CCANNNNNTGG 1 cut(s) 2159
PfoI TCCNGGA 3 cut(s) 495, 1969, 2647
PpuMI RGGWCCY 3 cut(s) 631, 2591, 2836
PscI ACATGT 3 cut(s) 685, 2302, 2688
PshBI ATTAAT 2 cut(s) 1914, 2211
PsiI TTATAA 1 cut(s) 1142
Psp124BI GAGCTC 1 cut(s) 1124
Psp1406I AACGTT 1 cut(s) 2088
Psp5II RGGWCCY 3 cut(s) 631, 2591, 2836
Psp6I CCWGG 4 cut(s) 1291, 1829, 1969, 2152
PspFI CCCAGC 1 cut(s) 1645
PspGI CCWGG 4 cut(s) 1291, 1829, 1969, 2152
PspN4I GGNNCC 4 cut(s) 494, 1399, 1574, 3007
PspPI GGNCC 5 cut(s) 631, 2145, 2513, 2591, 2836
PspPPI RGGWCCY 3 cut(s) 631, 2591, 2836
PstI CTGCAG 2 cut(s) 1075, 2713
PstNI CAGNNNCTG 5 cut(s) 281, 313, 878, 1079, 2183
PsuI RGATCY 2 cut(s) 380, 1055
PvuII CAGCTG 2 cut(s) 1601, 1649
RsaI GTAC 8 cut(s) 387, 1611, 1811, 1950, 2011, 2307, 2776, 2809
RsaNI GTAC 8 cut(s) 386, 1610, 1810, 1949, 2010, 2306, 2775, 2808
RseI CAYNNNNRTG 2 cut(s) 880, 1232
SacI GAGCTC 1 cut(s) 1124
SalI GTCGAC 1 cut(s) 2337
SapI GCTCTTC 2 cut(s) 1345, 1807
Sau96I GGNCC 5 cut(s) 631, 2145, 2513, 2591, 2836
ScrFI CCNGG 7 cut(s) 497, 1293, 1831, 1971, 2154, 2609, 2649
SduI GDGCHC 8 cut(s) 110, 322, 1124, 1229, 1357, 1402, 2718, 2828
SfcI CTRYAG 3 cut(s) 1071, 1489, 2709
SinI GGWCC 3 cut(s) 631, 2591, 2836
SmiMI CAYNNNNRTG 2 cut(s) 880, 1232
SmlI CTYRAG 1 cut(s) 1499
SmoI CTYRAG 1 cut(s) 1499
SphI GCATGC 2 cut(s) 1538, 1588
SspI AATATT 6 cut(s) 334, 907, 1087, 1365, 2194, 2553
SspMI CTAG 7 cut(s) 899, 966, 1731, 1775, 1871, 2030, 2588
SstI GAGCTC 1 cut(s) 1124
StyD4I CCNGG 7 cut(s) 495, 1291, 1829, 1969, 2152, 2607, 2647
StyI CCWWGG 2 cut(s) 1393, 2931
TaaI ACNGT 3 cut(s) 1261, 2445, 2774
TaiI ACGT 4 cut(s) 490, 956, 1344, 2091
TaqI TCGA 2 cut(s) 622, 2338
TatI WGTACW 7 cut(s) 385, 1809, 1948, 2009, 2305, 2774, 2807
TauI GCSGC 2 cut(s) 2575, 3011
TfiI GAWTC 6 cut(s) 722, 1721, 2187, 2232, 2927, 3035
TscAI CASTG 7 cut(s) 27, 240, 282, 1227, 1764, 2450, 2718
TseFI GTSAC 4 cut(s) 22, 637, 746, 1342
Tsp45I GTSAC 4 cut(s) 22, 637, 746, 1342
TspDTI ATGAA 8 cut(s) 132, 1018, 1050, 1696, 1731, 1974, 2562, 3027
TspGWI ACGGA 3 cut(s) 1941, 2103, 2388
TspRI CASTG 7 cut(s) 27, 240, 282, 1227, 1764, 2450, 2718
Van91I CCANNNNNTGG 1 cut(s) 2159
VneI GTGCAC 1 cut(s) 2714
VpaK11BI GGWCC 3 cut(s) 631, 2591, 2836
VspI ATTAAT 2 cut(s) 1914, 2211
XapI RAATTY 4 cut(s) 150, 500, 706, 1753
XbaI TCTAGA 1 cut(s) 1774
XceI RCATGY 8 cut(s) 169, 645, 689, 1538, 1588, 2306, 2692, 2816
XcmI CCANNNNNNNNNTGG 1 cut(s) 1409
XmiI GTMKAC 2 cut(s) 759, 2338
XmnI GAANNNNTTC 2 cut(s) 9, 1770
XspI CTAG 7 cut(s) 899, 966, 1731, 1775, 1871, 2030, 2588
ZraI GACGTC 2 cut(s) 954, 1342
Zsp2I ATGCAT 3 cut(s) 1586, 1942, 2992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.