AT3G12610

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012848
Physical Location & Seq
Reverse (-)
4006346 .. 4008018
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12610.1

Sequence Viewer

Length: 1119 bp
ATGAGAAAGTTGTTGGCATCGCCGTTTAGTTCATTACTCGCCGTCGTTTTCATTTCCGTCATCTCCGTCGTCAGATGCTGCTCTCCTAAAGATCAGACGGCTCTCAATGCTTTCAAGTCGTCACTGAGCGAACCAAACCTCGGTATCTTCAACACTTGGTCTGAAAACACTGATTGTTGCAAGGAATGGTACGGTATCAGCTGCGATCCTGATTCGGGTCGGGTCACTGATATTTCTCTCCGGGGAGAATCTGAAGACGCCATTTTCCAAAAGGCAGGCCGGTCCGGTTATATGTCCGGTTCGATTGATCCAGCAGTTTGTGACTTAACCGCACTCACTTCCCTCGTTCTCGCCGACTGGAAAGGAATCACCGGAGAGATTCCTCCGTGCATTACTTCCCTAGCTTCGCTCCGTATCCTCGATCTCGCCGGCAACAAGATCACCGGGGAGATTCCCGCGGAAATCGGCAAACTCTCGAAACTCGCTGTTTTAAACCTCGCCGAGAATCAAATGTCCGGCGAGATTCCGGCGTCACTGACGTCACTCATCGAGTTGAAGCATCTTGAATTGACGGAAAATGGAATCACCGGCGTGATCCCGGCCGATTTCGGATCGTTGAAGATGTTGAGCAGAGTTTTACTGGGCCGTAACGAACTAACCGGGTCAATTCCAGAGTCGATCTCGGGTATGGAACGGTTAGCGGATCTGGATCTATCCAAAAACCATATCGAAGGTCCGATACCCGAATGGATGGGTAACATGAAGGTACTCTCACTTTTGAATCTCGATTGCAATTCGTTAACCGGTCCAATCCCCGGTTCGCTTCTTAGCAATTCCGGTTTAGATGTTGCCAATTTGAGCCGAAATGCGTTGGAAGGAACTATACCCGACGTTTTCGGGTCAAAAACGTATTTAGTTTCGCTTGATCTGTCACACAATAGTCTATCGGGTCGGATCCCGGATTCGTTGTCGTCAGCTAAGTTTGTGGGACATTTGGATATTAGCCATAACAAGCTTTGTGGGCGTATTCCAACGGGTTTTCCTTTTGATCACCTTGAAGCTACGTCGTTTAGTGACAACCAATGTCTCTGCGGTGGCCCTTTGACGACGTCATGTTAA

Protein Analysis

372

Amino Acids

39.56

Weight (kDa)

4.93

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 69 1.8e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 130 - 190 3.3e-08 Leucine-rich repeat region
LRR_8 PF13855 136 - 195 1.8e-06 Leucine rich repeat
LRR_14 PF23598 163 - 264 4.7e-07 Leucine-rich repeat region
LRR_8 PF13855 184 - 243 2.1e-08 Leucine rich repeat
LRR_8 PF13855 257 - 315 1e-05 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012848)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12610
fragaria_vesca FvH4_7g00720
malus_domestica MD02G1315200.v1.1 MD07G1006700.v1.1
prunus_persica Prupe.2G009800_v2.0.a1
pyrus_communis pycom02g26420 pycom07g00540
rosa_chinensis RchiOBHm_Chr1g0314931
rosa_laevigata RLG00000030754
rosa_multiflora Rmu_co8044478.1_g000001 Rmu_sc0005015.1_g000002 Rmu_sc0005168.1_g000009
rosa_roxburghii Rroxscaffold_4G00331670
rosa_rugosa Rorug01G0003100
rosa_samantha Rh1AG014000 Rh1BG005600 Rh1DG007600
rosa_wichuraiana Rw1G000660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 542, 1112
AccII CGCG 1 cut(s) 458
AciI CCGC 5 cut(s) 330, 456, 458, 701, 1092
AclWI GGATC 8 cut(s) 200, 302, 589, 619, 711, 717, 949, 962
AcoI YGGCCR 1 cut(s) 600
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 4 cut(s) 258, 530, 539, 1109
AfaI GTAC 2 cut(s) 191, 768
AfiI CCNNNNNNNGG 3 cut(s) 140, 215, 815
AgeI ACCGGT 1 cut(s) 803
AgsI TTSAA 7 cut(s) 115, 151, 556, 566, 619, 781, 1058
AjuI GAANNNNNNNTTGG 2 cut(s) 802, 834
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 5 cut(s) 201, 404, 977, 1015, 1061
AluI AGCT 5 cut(s) 201, 404, 977, 1015, 1061
Alw26I GTCTC 1 cut(s) 1091
AlwI GGATC 8 cut(s) 200, 302, 589, 619, 711, 717, 949, 962
AlwNI CAGNNNCTG 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 682
AoxI GGCC 4 cut(s) 277, 600, 643, 1096
ApeKI GCWGC 2 cut(s) 78, 201
AsiGI ACCGGT 1 cut(s) 803
AspS9I GGNCC 5 cut(s) 282, 643, 734, 806, 1097
AsuC2I CCSGG 6 cut(s) 242, 445, 599, 661, 816, 959
AsuHPI GGTGA 4 cut(s) 361, 433, 577, 1043
AvaI CYCGRG 1 cut(s) 682
AvaII GGWCC 3 cut(s) 282, 734, 806
BaeI ACNNNNGTAYC 2 cut(s) 127, 160
BamHI GGATCC 1 cut(s) 954
BarI GAAGNNNNNNTAC 4 cut(s) 723, 755, 867, 899
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 65, 188
BccI CCATC 1 cut(s) 745
BceAI ACGGC 4 cut(s) 7, 26, 114, 630
BciVI GTATCC 1 cut(s) 425
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 6 cut(s) 242, 445, 599, 661, 816, 959
BcoDI GTCTC 1 cut(s) 1091
BfaI CTAG 1 cut(s) 401
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 2 cut(s) 79, 202
BlsI GCNGC 2 cut(s) 80, 203
Bme1390I CCNGG 6 cut(s) 242, 445, 599, 661, 816, 959
Bme18I GGWCC 3 cut(s) 282, 734, 806
BmeT110I CYCGRG 1 cut(s) 682
BmgT120I GGNCC 5 cut(s) 282, 643, 734, 806, 1097
BmiI GGNNCC 1 cut(s) 956
BmrFI CCNGG 6 cut(s) 242, 445, 599, 661, 816, 959
BmrI ACTGGG 1 cut(s) 650
BmsI GCATC 3 cut(s) 26, 65, 568
BmuI ACTGGG 1 cut(s) 650
BpiI GAAGAC 1 cut(s) 261
BplI GAGNNNNNCTC 2 cut(s) 665, 697
BpuMI CCSGG 6 cut(s) 242, 445, 599, 661, 816, 959
BsaBI GATNNNNATC 1 cut(s) 708
BsaHI GRCGYC 4 cut(s) 258, 530, 539, 1109
BsaJI CCNNGG 5 cut(s) 139, 241, 444, 456, 814
BsaWI WCCGGW 5 cut(s) 284, 296, 371, 803, 836
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 215, 815
Bse118I RCCGGY 4 cut(s) 279, 428, 587, 803
Bse1I ACTGG 2 cut(s) 362, 645
Bse8I GATNNNNATC 1 cut(s) 708
BseDI CCNNGG 5 cut(s) 139, 241, 444, 456, 814
BseGI GGATG 1 cut(s) 756
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 3 cut(s) 140, 215, 815
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 362, 645
BseX3I CGGCCG 1 cut(s) 600
BseXI GCAGC 2 cut(s) 65, 188
Bsh1236I CGCG 1 cut(s) 458
Bsh1285I CGRYCG 1 cut(s) 603
BshFI GGCC 4 cut(s) 279, 602, 645, 1098
BshTI ACCGGT 1 cut(s) 803
BsiEI CGRYCG 1 cut(s) 603
BsiHKCI CYCGRG 1 cut(s) 682
BslFI GGGAC 1 cut(s) 1002
BslI CCNNNNNNNGG 3 cut(s) 140, 215, 815
BsmAI GTCTC 1 cut(s) 1091
BsmFI GGGAC 1 cut(s) 1002
BsnI GGCC 4 cut(s) 279, 602, 645, 1098
BsoBI CYCGRG 1 cut(s) 682
BspACI CCGC 5 cut(s) 330, 456, 458, 701, 1092
BspANI GGCC 4 cut(s) 279, 602, 645, 1098
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 956
BspPI GGATC 8 cut(s) 200, 302, 589, 619, 711, 717, 949, 962
BsrFI RCCGGY 4 cut(s) 279, 428, 587, 803
BsrI ACTGG 2 cut(s) 362, 645
BssAI RCCGGY 4 cut(s) 279, 428, 587, 803
BssECI CCNNGG 5 cut(s) 139, 241, 444, 456, 814
BssNI GRCGYC 4 cut(s) 258, 530, 539, 1109
Bst4CI ACNGT 2 cut(s) 194, 696
BstACI GRCGYC 4 cut(s) 258, 530, 539, 1109
BstC8I GCNNGC 2 cut(s) 277, 430
BstDEI CTNAG 3 cut(s) 125, 827, 978
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 1 cut(s) 756
BstFNI CGCG 1 cut(s) 458
BstMAI GTCTC 1 cut(s) 1091
BstMCI CGRYCG 1 cut(s) 603
BstMWI GCNNNNNNNGC 2 cut(s) 107, 1021
BstSCI CCNGG 6 cut(s) 240, 443, 597, 659, 814, 957
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 2 cut(s) 65, 188
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 3 cut(s) 703, 709, 954
BstYI RGATCY 3 cut(s) 703, 709, 954
BstZI CGGCCG 1 cut(s) 600
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 4 cut(s) 279, 602, 645, 1098
BtgI CCRYGG 1 cut(s) 456
BtgZI GCGATG 1 cut(s) 3
BtsCI GGATG 1 cut(s) 756
BtsIMutI CAGTG 4 cut(s) 122, 168, 225, 533
Cac8I GCNNGC 2 cut(s) 277, 430
CaiI CAGNNNCTG 1 cut(s) 78
Cfr10I RCCGGY 4 cut(s) 279, 428, 587, 803
Cfr13I GGNCC 5 cut(s) 282, 643, 734, 806, 1097
Cfr42I CCGCGG 1 cut(s) 459
CpoI CGGWCCG 1 cut(s) 282
CseI GACGC 2 cut(s) 266, 519
Csp6I GTAC 2 cut(s) 190, 767
CspAI ACCGGT 1 cut(s) 803
CspCI CAANNNNNGTGG 2 cut(s) 1000, 1035
CspI CGGWCCG 1 cut(s) 282
CviAII CATG 2 cut(s) 760, 1113
CviQI GTAC 2 cut(s) 190, 767
DdeI CTNAG 3 cut(s) 125, 827, 978
DraI TTTAAA 1 cut(s) 492
EaeI YGGCCR 1 cut(s) 600
EagI CGGCCG 1 cut(s) 600
EclXI CGGCCG 1 cut(s) 600
Eco47I GGWCC 3 cut(s) 282, 734, 806
Eco52I CGGCCG 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 682
FaeI CATG 2 cut(s) 763, 1116
FaiI YATR 8 cut(s) 291, 293, 689, 726, 761, 884, 1008, 1114
FaqI GGGAC 1 cut(s) 1002
FatI CATG 2 cut(s) 759, 1112
FauI CCCGC 1 cut(s) 463
FbaI TGATCA 1 cut(s) 1048
Fnu4HI GCNGC 2 cut(s) 79, 202
FokI GGATG 1 cut(s) 763
Fsp4HI GCNGC 2 cut(s) 79, 202
FspBI CTAG 1 cut(s) 401
GluI GCNGC 2 cut(s) 79, 202
HaeIII GGCC 4 cut(s) 279, 602, 645, 1098
HgaI GACGC 2 cut(s) 266, 519
Hin1I GRCGYC 4 cut(s) 258, 530, 539, 1109
Hin1II CATG 2 cut(s) 763, 1116
HincII GTYRAC 1 cut(s) 801
HindII GTYRAC 1 cut(s) 801
HindIII AAGCTT 1 cut(s) 1013
HpaI GTTAAC 1 cut(s) 801
HphI GGTGA 4 cut(s) 361, 433, 577, 1043
Hpy166II GTNNAC 1 cut(s) 801
Hpy188I TCNGA 7 cut(s) 74, 96, 163, 253, 611, 738, 954
Hpy188III TCNNGA 6 cut(s) 209, 475, 563, 671, 707, 785
Hpy8I GTNNAC 1 cut(s) 801
Hpy99I CGWCG 5 cut(s) 47, 71, 893, 1069, 1111
HpyAV CCTTC 3 cut(s) 725, 757, 869
HpyCH4III ACNGT 2 cut(s) 194, 696
HpyCH4IV ACGT 5 cut(s) 539, 891, 908, 1064, 1109
HpyCH4V TGCA 3 cut(s) 180, 390, 792
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 1021
HpyF3I CTNAG 3 cut(s) 125, 827, 978
HpySE526I ACGT 5 cut(s) 539, 891, 908, 1064, 1109
Hsp92I GRCGYC 4 cut(s) 258, 530, 539, 1109
Hsp92II CATG 2 cut(s) 763, 1116
KroI GCCGGC 1 cut(s) 428
KroNI GCCGGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 1048
KspAI GTTAAC 1 cut(s) 801
KspI CCGCGG 1 cut(s) 459
LmnI GCTCC 1 cut(s) 414
Lsp1109I GCAGC 2 cut(s) 65, 188
LweI GCATC 3 cut(s) 26, 65, 568
MaeI CTAG 1 cut(s) 401
MaeII ACGT 5 cut(s) 539, 891, 908, 1064, 1109
MaeIII GTNAC 9 cut(s) 120, 223, 320, 531, 540, 647, 755, 930, 1073
MboII GAAGA 3 cut(s) 139, 266, 631
MflI RGATCY 3 cut(s) 703, 709, 954
MluCI AATT 5 cut(s) 566, 666, 793, 832, 853
MlyI GAGTC 1 cut(s) 683
MmeI TCCRAC 3 cut(s) 852, 932, 1055
MnlI CCTC 5 cut(s) 149, 353, 393, 428, 506
MroNI GCCGGC 1 cut(s) 428
MseI TTAA 4 cut(s) 326, 491, 800, 1117
MslI CAYNNNNRTG 1 cut(s) 590
MspA1I CMGCKG 2 cut(s) 201, 458
MspR9I CCNGG 6 cut(s) 242, 445, 599, 661, 816, 959
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 107, 1021
NaeI GCCGGC 1 cut(s) 430
NciI CCSGG 6 cut(s) 242, 445, 599, 661, 816, 959
NgoMIV GCCGGC 1 cut(s) 428
NlaIII CATG 2 cut(s) 763, 1116
NlaIV GGNNCC 1 cut(s) 956
NmeAIII GCCGAG 1 cut(s) 526
NmuCI GTSAC 7 cut(s) 120, 223, 320, 531, 540, 930, 1073
OliI CACNNNNGTG 1 cut(s) 590
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdiI GCCGGC 1 cut(s) 430
PflFI GACNNNGTC 1 cut(s) 1108
PfoI TCCNGGA 1 cut(s) 957
PinAI ACCGGT 1 cut(s) 803
PkrI GCNGC 2 cut(s) 80, 203
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PspN4I GGNNCC 1 cut(s) 956
PspPI GGNCC 5 cut(s) 282, 643, 734, 806, 1097
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 3 cut(s) 703, 709, 954
PsyI GACNNNGTC 1 cut(s) 1108
PvuII CAGCTG 1 cut(s) 201
RsaI GTAC 2 cut(s) 191, 768
RsaNI GTAC 2 cut(s) 190, 767
RseI CAYNNNNRTG 1 cut(s) 590
Rsr2I CGGWCCG 1 cut(s) 282
RsrII CGGWCCG 1 cut(s) 282
SacII CCGCGG 1 cut(s) 459
SaqAI TTAA 4 cut(s) 326, 491, 800, 1117
SatI GCNGC 2 cut(s) 79, 202
Sau96I GGNCC 5 cut(s) 282, 643, 734, 806, 1097
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 6 cut(s) 242, 445, 599, 661, 816, 959
SfaNI GCATC 3 cut(s) 26, 65, 568
Sfr303I CCGCGG 1 cut(s) 459
SgrAI CRCCGGYG 1 cut(s) 587
SgrBI CCGCGG 1 cut(s) 459
SinI GGWCC 3 cut(s) 282, 734, 806
SmiMI CAYNNNNRTG 1 cut(s) 590
Sse9I AATT 5 cut(s) 566, 666, 793, 832, 853
SsiI CCGC 5 cut(s) 330, 456, 458, 701, 1092
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 6 cut(s) 240, 443, 597, 659, 814, 957
TaaI ACNGT 2 cut(s) 194, 696
TaiI ACGT 5 cut(s) 542, 894, 911, 1067, 1112
TaqI TCGA 7 cut(s) 302, 420, 476, 549, 677, 729, 786
TasI AATT 5 cut(s) 566, 666, 793, 832, 853
Tru1I TTAA 4 cut(s) 326, 491, 800, 1117
Tru9I TTAA 4 cut(s) 326, 491, 800, 1117
TscAI CASTG 4 cut(s) 129, 175, 232, 540
TseFI GTSAC 7 cut(s) 120, 223, 320, 531, 540, 930, 1073
TseI GCWGC 2 cut(s) 78, 201
Tsp45I GTSAC 7 cut(s) 120, 223, 320, 531, 540, 930, 1073
TspDTI ATGAA 3 cut(s) 21, 40, 776
TspGWI ACGGA 5 cut(s) 46, 55, 375, 401, 587
TspRI CASTG 4 cut(s) 129, 175, 232, 540
Tth111I GACNNNGTC 1 cut(s) 1108
VpaK11BI GGWCC 3 cut(s) 282, 734, 806
XspI CTAG 1 cut(s) 401
ZraI GACGTC 2 cut(s) 540, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.