FvH4_7g00720

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012848
Physical Location & Seq
Forward (+)
1240872 .. 1242505
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00720.t1

Sequence Viewer

Length: 1095 bp
ATGAGGGTGGTGTTGATCGCCGTCGTGATCACTCTGCTCTGCGCCATTGCTGTTGATTCCTGCTTACCAACAGACCTGGCAGCCCTCGAAGCCGTCAAGGCCTCCCTCACCGAATCCAACCTCGGCCTCTTCAACACATGGTCCGGCACCGACTGCTGCGTCAACTGGTACGGCGTCAGCTGCGACCCTTCCACTCGCCGCGTCGTCGACCTTAACCTCCGCGGCGAGTCTGAGGACCCCATTCTCTCCAAGTCTGGCCAGTCCGGCTTCATGTCCGGCTCCATCGCCCCCGAGATTTGCAACCTCGACAGCCTCACCACCCTCGTCCTCGCCGACTGGAAGGGCCTCTCCGGCCAGATCCCCCAATGCCTCACCTTCCTCTCTTCCCTCCGGGTCCTCGACCTTACCGGAAACAAACTCTCCGGCGTCATTCCTACCGATATCGGCAAGCTGAAGATGCTCAGAGTCCTCAACCTCGCCGACAACCAGATCGCAGGCGACATTCCGGCAAGTATCGTCAACCTCGCCGGGCTAATGCACCTGGACCTCAGGAACAACAAACTCACCGGCGGAGTTCCCGCCGGGTTTTCAAACATGAAGATGTTGAGCCGAGCATTGCTGAGCGGGAACCAGCTCACCGGATCCATCCCGGAGTCCATCGGAAACATGCCTCGCCTAGCTGACCTAGACTTGTCCCGGAACCACATCTCGGGTTCGATACCGGACAGCCTCGGAAACATGAGGGTTCTGTCGACACTCAACCTCGACGGAAACGCTATTTCCGGCGAGTTACCTACGACCCTGTTAAGCAACCACGGTTTGGGCATCCTGAACTTGAGCCGGAACAGCATTGAGGGCAACATCCCGGACGTGTTTCACGGAAACTCGTACTTCATGGTTCTGGATTTGTCGTACAACAACCTGAAAGGGAAGATACCTGGGACGCTGTCGTCGGCGAAGTATATCGGACACCTGGACCTGAGCCACAACCACCTGTGCGGGAATATTCCGATGGGTGATCCCTTCGACCATATGGACGCGTCGTCGTTTACCAACAACGATTGTCTCTGCGGGAATCCGTTGAGTACTTGTTGA

Protein Analysis

365

Amino Acids

38.62

Weight (kDa)

5.28

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 23 - 62 4.8e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 96 - 230 4e-13 Leucine-rich repeat region
LRR_8 PF13855 104 - 164 2.3e-07 Leucine rich repeat
LRR_8 PF13855 207 - 260 1.1e-07 Leucine rich repeat
LRR_8 PF13855 274 - 332 2.9e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012848)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12610
fragaria_vesca FvH4_7g00720
malus_domestica MD02G1315200.v1.1 MD07G1006700.v1.1
prunus_persica Prupe.2G009800_v2.0.a1
pyrus_communis pycom02g26420 pycom07g00540
rosa_chinensis RchiOBHm_Chr1g0314931
rosa_laevigata RLG00000030754
rosa_multiflora Rmu_co8044478.1_g000001 Rmu_sc0005015.1_g000002 Rmu_sc0005168.1_g000009
rosa_roxburghii Rroxscaffold_4G00331670
rosa_rugosa Rorug01G0003100
rosa_samantha Rh1AG014000 Rh1BG005600 Rh1DG007600
rosa_wichuraiana Rw1G000660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 158, 949
AccB1I GGYRCC 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 820
AccBSI CCGCTC 1 cut(s) 624
AccI GTMKAC 2 cut(s) 207, 752
AccII CGCG 3 cut(s) 201, 222, 1040
AciI CCGC 8 cut(s) 199, 220, 222, 570, 579, 624, 999, 1071
AclWI GGATC 4 cut(s) 352, 636, 649, 1013
AcoI YGGCCR 2 cut(s) 256, 352
AcuI CTGAAG 1 cut(s) 473
AcyI GRCGYC 2 cut(s) 174, 426
AfaI GTAC 4 cut(s) 170, 890, 914, 1087
AfiI CCNNNNNNNGG 2 cut(s) 709, 820
AflIII ACRYGT 2 cut(s) 870, 1038
AgsI TTSAA 2 cut(s) 133, 591
AhdI GACNNNNNGTC 1 cut(s) 1042
AjiI CACGTC 1 cut(s) 871
AjnI CCWGG 4 cut(s) 75, 540, 937, 972
AluBI AGCT 4 cut(s) 180, 451, 634, 680
AluI AGCT 4 cut(s) 180, 451, 634, 680
Alw26I GTCTC 1 cut(s) 1070
AlwI GGATC 4 cut(s) 352, 636, 649, 1013
Ama87I CYCGRG 2 cut(s) 290, 709
AoxI GGCC 5 cut(s) 99, 124, 256, 343, 352
ApeKI GCWGC 3 cut(s) 80, 156, 180
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 6 cut(s) 141, 235, 343, 394, 544, 976
AsuC2I CCSGG 6 cut(s) 392, 529, 583, 650, 697, 866
AsuHPI GGTGA 6 cut(s) 100, 307, 364, 556, 628, 1028
AvaI CYCGRG 2 cut(s) 290, 709
AvaII GGWCC 5 cut(s) 141, 235, 394, 544, 976
AxyI CCTNAGG 1 cut(s) 548
BalI TGGCCA 1 cut(s) 258
BamHI GGATCC 1 cut(s) 641
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 3 cut(s) 92, 143, 167
BccI CCATC 4 cut(s) 290, 653, 665, 1006
BceAI ACGGC 3 cut(s) 5, 77, 187
BciT130I CCWGG 4 cut(s) 77, 542, 939, 974
BclI TGATCA 1 cut(s) 27
BcnI CCSGG 6 cut(s) 392, 529, 583, 650, 697, 866
BcoDI GTCTC 1 cut(s) 1070
BfaI CTAG 2 cut(s) 677, 686
BglI GCCNNNNNGGC 3 cut(s) 98, 264, 351
BisI GCNGC 5 cut(s) 81, 157, 181, 199, 223
BlpI GCTNAGC 1 cut(s) 620
BlsI GCNGC 5 cut(s) 82, 158, 182, 200, 224
BmcAI AGTACT 1 cut(s) 1087
Bme18I GGWCC 5 cut(s) 141, 235, 394, 544, 976
BmeRI GACNNNNNGTC 1 cut(s) 1042
BmeT110I CYCGRG 2 cut(s) 290, 709
BmgBI CACGTC 1 cut(s) 871
BmgT120I GGNCC 6 cut(s) 141, 235, 343, 394, 544, 976
BmiI GGNNCC 7 cut(s) 148, 237, 280, 395, 629, 643, 701
BmsI GCATC 2 cut(s) 447, 834
Bpu10I CCTNAGC 1 cut(s) 980
Bpu1102I GCTNAGC 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 856
BpuMI CCSGG 6 cut(s) 392, 529, 583, 650, 697, 866
BsaHI GRCGYC 2 cut(s) 174, 426
BsaJI CCNNGG 5 cut(s) 121, 220, 730, 814, 938
BsaWI WCCGGW 3 cut(s) 407, 638, 721
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 709, 820
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 3 cut(s) 170, 259, 341
Bse21I CCTNAGG 1 cut(s) 548
Bse3DI GCAATG 2 cut(s) 45, 614
BseBI CCWGG 4 cut(s) 77, 542, 939, 974
BseDI CCNNGG 5 cut(s) 121, 220, 730, 814, 938
BseGI GGATG 3 cut(s) 645, 825, 861
BseLI CCNNNNNNNGG 2 cut(s) 709, 820
BseMI GCAATG 2 cut(s) 45, 614
BseMII CTCAG 5 cut(s) 222, 475, 562, 611, 971
BseNI ACTGG 3 cut(s) 170, 259, 341
BseXI GCAGC 3 cut(s) 92, 143, 167
Bsh1236I CGCG 3 cut(s) 201, 222, 1040
BshFI GGCC 5 cut(s) 101, 126, 258, 345, 354
BshNI GGYRCC 1 cut(s) 146
BsiHKCI CYCGRG 2 cut(s) 290, 709
BslFI GGGAC 2 cut(s) 679, 955
BslI CCNNNNNNNGG 2 cut(s) 709, 820
BsmAI GTCTC 1 cut(s) 1070
BsmFI GGGAC 2 cut(s) 679, 955
BsnI GGCC 5 cut(s) 101, 126, 258, 345, 354
BsoBI CYCGRG 2 cut(s) 290, 709
Bsp143I GATC 6 cut(s) 15, 27, 357, 489, 641, 1018
Bsp1720I GCTNAGC 1 cut(s) 620
BspACI CCGC 8 cut(s) 199, 220, 222, 570, 579, 624, 999, 1071
BspANI GGCC 5 cut(s) 101, 126, 258, 345, 354
BspCNI CTCAG 5 cut(s) 223, 474, 561, 612, 972
BspFNI CGCG 3 cut(s) 201, 222, 1040
BspLI GGNNCC 7 cut(s) 148, 237, 280, 395, 629, 643, 701
BspPI GGATC 4 cut(s) 352, 636, 649, 1013
BspT107I GGYRCC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 624
BsrDI GCAATG 2 cut(s) 45, 614
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 3 cut(s) 170, 259, 341
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 5 cut(s) 121, 220, 730, 814, 938
BssMI GATC 6 cut(s) 15, 27, 357, 489, 641, 1018
BssNI GRCGYC 2 cut(s) 174, 426
Bst2UI CCWGG 4 cut(s) 77, 542, 939, 974
Bst4CI ACNGT 1 cut(s) 818
Bst6I CTCTTC 2 cut(s) 134, 388
BstACI GRCGYC 2 cut(s) 174, 426
BstAPI GCANNNNNTGC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 449, 496
BstDEI CTNAG 5 cut(s) 231, 461, 548, 620, 980
BstDSI CCRYGG 2 cut(s) 220, 814
BstF5I GGATG 3 cut(s) 645, 825, 861
BstFNI CGCG 3 cut(s) 201, 222, 1040
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 6 cut(s) 18, 30, 360, 492, 644, 1021
BstMAI GTCTC 1 cut(s) 1070
BstMBI GATC 6 cut(s) 15, 27, 357, 489, 641, 1018
BstMWI GCNNNNNNNGC 9 cut(s) 89, 98, 153, 180, 264, 351, 457, 846, 855
BstNI CCWGG 4 cut(s) 77, 542, 939, 974
BstNSI RCATGY 1 cut(s) 670
BstUI CGCG 3 cut(s) 201, 222, 1040
BstV1I GCAGC 3 cut(s) 92, 143, 167
BstX2I RGATCY 2 cut(s) 357, 641
BstYI RGATCY 2 cut(s) 357, 641
Bsu36I CCTNAGG 1 cut(s) 548
BsuRI GGCC 5 cut(s) 101, 126, 258, 345, 354
BtgI CCRYGG 2 cut(s) 220, 814
BtgZI GCGATG 1 cut(s) 268
BtrI CACGTC 1 cut(s) 871
BtsCI GGATG 3 cut(s) 645, 825, 861
Cac8I GCNNGC 2 cut(s) 449, 496
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 6 cut(s) 141, 235, 343, 394, 544, 976
Cfr42I CCGCGG 1 cut(s) 223
CseI GACGC 7 cut(s) 148, 163, 190, 415, 952, 1029, 1046
Csp6I GTAC 4 cut(s) 169, 889, 913, 1086
CviAII CATG 6 cut(s) 138, 271, 595, 667, 739, 895
CviQI GTAC 4 cut(s) 169, 889, 913, 1086
DdeI CTNAG 5 cut(s) 231, 461, 548, 620, 980
DpnI GATC 6 cut(s) 17, 29, 359, 491, 643, 1020
DpnII GATC 6 cut(s) 15, 27, 357, 489, 641, 1018
DrdI GACNNNNNNGTC 2 cut(s) 158, 949
DriI GACNNNNNGTC 1 cut(s) 1042
DseDI GACNNNNNNGTC 2 cut(s) 158, 949
EaeI YGGCCR 2 cut(s) 256, 352
Eam1104I CTCTTC 2 cut(s) 134, 388
Eam1105I GACNNNNNGTC 1 cut(s) 1042
EarI CTCTTC 2 cut(s) 134, 388
EciI GGCGGA 1 cut(s) 585
Eco147I AGGCCT 1 cut(s) 101
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 5 cut(s) 141, 235, 394, 544, 976
Eco57I CTGAAG 1 cut(s) 473
Eco81I CCTNAGG 1 cut(s) 548
Eco88I CYCGRG 2 cut(s) 290, 709
EcoO109I RGGNCCY 3 cut(s) 235, 343, 394
EcoRII CCWGG 4 cut(s) 75, 540, 937, 972
EcoRV GATATC 1 cut(s) 442
FaeI CATG 6 cut(s) 141, 274, 598, 670, 742, 898
FaiI YATR 9 cut(s) 139, 272, 596, 668, 740, 896, 963, 1032, 1034
FaqI GGGAC 2 cut(s) 679, 955
FatI CATG 6 cut(s) 137, 270, 594, 666, 738, 894
FauI CCCGC 4 cut(s) 586, 617, 992, 1064
FauNDI CATATG 1 cut(s) 1032
FbaI TGATCA 1 cut(s) 27
FblI GTMKAC 2 cut(s) 207, 752
Fnu4HI GCNGC 5 cut(s) 81, 157, 181, 199, 223
FokI GGATG 3 cut(s) 632, 812, 848
Fsp4HI GCNGC 5 cut(s) 81, 157, 181, 199, 223
FspBI CTAG 2 cut(s) 677, 686
GlaI GCGC 1 cut(s) 43
GluI GCNGC 5 cut(s) 81, 157, 181, 199, 223
HaeIII GGCC 5 cut(s) 101, 126, 258, 345, 354
HgaI GACGC 7 cut(s) 148, 163, 190, 415, 952, 1029, 1046
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 2 cut(s) 174, 426
Hin1II CATG 6 cut(s) 141, 274, 598, 670, 742, 898
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 4 cut(s) 163, 208, 520, 753
HindII GTYRAC 4 cut(s) 163, 208, 520, 753
HinfI GANTC 6 cut(s) 56, 113, 227, 465, 653, 1075
HphI GGTGA 6 cut(s) 100, 307, 364, 556, 628, 1028
Hpy166II GTNNAC 5 cut(s) 163, 208, 520, 753, 1050
Hpy188I TCNGA 6 cut(s) 232, 464, 662, 734, 968, 1011
Hpy188III TCNNGA 4 cut(s) 25, 550, 829, 902
Hpy8I GTNNAC 5 cut(s) 163, 208, 520, 753, 1050
Hpy99I CGWCG 7 cut(s) 26, 206, 209, 770, 955, 1045, 1048
HpyAV CCTTC 4 cut(s) 198, 334, 385, 1033
HpyCH4III ACNGT 1 cut(s) 818
HpyCH4IV ACGT 1 cut(s) 870
HpyCH4V TGCA 2 cut(s) 300, 538
HpyF10VI GCNNNNNNNGC 9 cut(s) 89, 98, 153, 180, 264, 351, 457, 846, 855
HpyF3I CTNAG 5 cut(s) 231, 461, 548, 620, 980
HpySE526I ACGT 1 cut(s) 870
Hsp92I GRCGYC 2 cut(s) 174, 426
Hsp92II CATG 6 cut(s) 141, 274, 598, 670, 742, 898
HspAI GCGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 27
KspI CCGCGG 1 cut(s) 223
Kzo9I GATC 6 cut(s) 15, 27, 357, 489, 641, 1018
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 3 cut(s) 92, 143, 167
LweI GCATC 2 cut(s) 447, 834
MaeI CTAG 2 cut(s) 677, 686
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 1 cut(s) 789
MalI GATC 6 cut(s) 17, 29, 359, 491, 643, 1020
MbiI CCGCTC 1 cut(s) 624
MboI GATC 6 cut(s) 15, 27, 357, 489, 641, 1018
MboII GAAGA 5 cut(s) 121, 375, 466, 610, 943
MflI RGATCY 2 cut(s) 357, 641
MlsI TGGCCA 1 cut(s) 258
MluI ACGCGT 1 cut(s) 1038
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 3 cut(s) 236, 474, 662
MmeI TCCRAC 1 cut(s) 141
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
MseI TTAA 2 cut(s) 213, 806
MslI CAYNNNNRTG 1 cut(s) 599
Msp20I TGGCCA 1 cut(s) 258
MspA1I CMGCKG 2 cut(s) 180, 222
MvaI CCWGG 4 cut(s) 77, 542, 939, 974
MvnI CGCG 3 cut(s) 201, 222, 1040
MwoI GCNNNNNNNGC 9 cut(s) 89, 98, 153, 180, 264, 351, 457, 846, 855
NciI CCSGG 6 cut(s) 392, 529, 583, 650, 697, 866
NdeI CATATG 1 cut(s) 1032
NdeII GATC 6 cut(s) 15, 27, 357, 489, 641, 1018
NlaIII CATG 6 cut(s) 141, 274, 598, 670, 742, 898
NlaIV GGNNCC 7 cut(s) 148, 237, 280, 395, 629, 643, 701
NmeAIII GCCGAG 2 cut(s) 102, 635
NspI RCATGY 1 cut(s) 670
PceI AGGCCT 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PfeI GAWTC 3 cut(s) 56, 113, 1075
PflFI GACNNNGTC 1 cut(s) 946
PflMI CCANNNNNTGG 1 cut(s) 820
PfoI TCCNGGA 3 cut(s) 648, 695, 864
PkrI GCNGC 5 cut(s) 82, 158, 182, 200, 224
PleI GAGTC 3 cut(s) 235, 473, 661
PpsI GAGTC 3 cut(s) 235, 473, 661
PpuMI RGGWCCY 2 cut(s) 235, 394
Psp5II RGGWCCY 2 cut(s) 235, 394
Psp6I CCWGG 4 cut(s) 75, 540, 937, 972
PspGI CCWGG 4 cut(s) 75, 540, 937, 972
PspN4I GGNNCC 7 cut(s) 148, 237, 280, 395, 629, 643, 701
PspPI GGNCC 6 cut(s) 141, 235, 343, 394, 544, 976
PspPPI RGGWCCY 2 cut(s) 235, 394
PsuI RGATCY 2 cut(s) 357, 641
PsyI GACNNNGTC 1 cut(s) 946
PvuII CAGCTG 1 cut(s) 180
RsaI GTAC 4 cut(s) 170, 890, 914, 1087
RsaNI GTAC 4 cut(s) 169, 889, 913, 1086
RseI CAYNNNNRTG 1 cut(s) 599
SacII CCGCGG 1 cut(s) 223
SalI GTCGAC 2 cut(s) 206, 751
SaqAI TTAA 2 cut(s) 213, 806
SatI GCNGC 5 cut(s) 81, 157, 181, 199, 223
Sau3AI GATC 6 cut(s) 15, 27, 357, 489, 641, 1018
Sau96I GGNCC 6 cut(s) 141, 235, 343, 394, 544, 976
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 3 cut(s) 236, 474, 662
SfaNI GCATC 2 cut(s) 447, 834
SfiI GGCCNNNNNGGCC 1 cut(s) 351
Sfr303I CCGCGG 1 cut(s) 223
SgrAI CRCCGGYG 1 cut(s) 566
SgrBI CCGCGG 1 cut(s) 223
SinI GGWCC 5 cut(s) 141, 235, 394, 544, 976
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 835
SmoI CTYRAG 1 cut(s) 835
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 8 cut(s) 199, 220, 222, 570, 579, 624, 999, 1071
SspI AATATT 1 cut(s) 1006
SspMI CTAG 2 cut(s) 677, 686
StuI AGGCCT 1 cut(s) 101
TaaI ACNGT 1 cut(s) 818
TaiI ACGT 1 cut(s) 873
TaqI TCGA 8 cut(s) 87, 207, 306, 399, 716, 752, 765, 1026
TatI WGTACW 1 cut(s) 1085
TauI GCSGC 2 cut(s) 201, 225
TfiI GAWTC 3 cut(s) 56, 113, 1075
Tru1I TTAA 2 cut(s) 213, 806
Tru9I TTAA 2 cut(s) 213, 806
TseI GCWGC 3 cut(s) 80, 156, 180
TspDTI ATGAA 3 cut(s) 259, 611, 883
TspGWI ACGGA 3 cut(s) 783, 894, 1068
Tth111I GACNNNGTC 1 cut(s) 946
Van91I CCANNNNNTGG 1 cut(s) 820
VpaK11BI GGWCC 5 cut(s) 141, 235, 394, 544, 976
XceI RCATGY 1 cut(s) 670
XmiI GTMKAC 2 cut(s) 207, 752
XspI CTAG 2 cut(s) 677, 686
ZrmI AGTACT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.