Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8044478.1

Orthogroup ID

OG0012848

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 342

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8044478.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

acactcaacttggacggaaactcaatttccggacagttaccgtcggcgttgttgagcaaccatggtttgggtatcctgaacttgagccggaacagcattgggggtaacatccctgacgtgtttcacggaaattcttacttcatggctctggacttgtcgtacaacaatttgaagggggcgataccacgtacgctgtcgtcggcgaagtatatcggacacctggatctgagccacaaccacctgtgcgggaacattccggtgggtgatcccttcgatcatctggaagattcgtcgtttgccaacaacgattgtctctgcgggaatccgttgaagacttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

113

Amino Acids

12.02

Weight (kDa)

5.73

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12610
fragaria_vesca	FvH4_7g00720
malus_domestica	MD02G1315200.v1.1 MD07G1006700.v1.1
prunus_persica	Prupe.2G009800_v2.0.a1
pyrus_communis	pycom02g26420 pycom07g00540
rosa_chinensis	RchiOBHm_Chr1g0314931
rosa_laevigata	RLG00000030754
rosa_multiflora	Rmu_co8044478.1_g000001 Rmu_sc0005015.1_g000002 Rmu_sc0005168.1_g000009
rosa_roxburghii	Rroxscaffold_4G00331670
rosa_rugosa	Rorug01G0003100
rosa_samantha	Rh1AG014000 Rh1BG005600 Rh1DG007600
rosa_wichuraiana	Rw1G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	2 cut(s)	246, 318
AclWI	GGATC	2 cut(s)	231, 260
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	2 cut(s)	161, 190
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	172, 331
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	231, 260
Aor13HI	TCCGGA	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	2 cut(s)	29, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseAI	TCCGGA	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	218
BsiSI	CCGG	3 cut(s)	30, 88, 257
BsiWI	CGTACG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	223, 265, 274
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	2 cut(s)	246, 318
BspCNI	CTCAG	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	29
BspPI	GGATC	2 cut(s)	231, 260
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	223, 265, 274
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	36, 42
BstBAI	YACGTR	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	3 cut(s)	226, 268, 277
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	3 cut(s)	223, 265, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	61
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	160, 189
CviAII	CATG	2 cut(s)	62, 142
CviJI	RGCY	3 cut(s)	87, 146, 231
CviKI_1	RGCY	3 cut(s)	87, 146, 231
CviQI	GTAC	2 cut(s)	160, 189
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	3 cut(s)	225, 267, 276
DpnII	GATC	3 cut(s)	223, 265, 274
Eco130I	CCWWGG	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	65, 145
FaiI	YATR	3 cut(s)	63, 143, 210
FatI	CATG	2 cut(s)	61, 141
FauI	CCCGC	2 cut(s)	239, 311
FokI	GGATG	1 cut(s)	95
HapII	CCGG	3 cut(s)	30, 88, 257
Hin1II	CATG	2 cut(s)	65, 145
HinfI	GANTC	2 cut(s)	287, 322
HpaII	CCGG	3 cut(s)	30, 88, 257
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	215, 228
Hpy188III	TCNNGA	4 cut(s)	30, 76, 149, 281
Hpy99I	CGWCG	3 cut(s)	46, 202, 295
HpyAV	CCTTC	2 cut(s)	166, 280
HpyCH4III	ACNGT	2 cut(s)	36, 42
HpyCH4IV	ACGT	2 cut(s)	117, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	2 cut(s)	117, 187
Hsp92II	CATG	2 cut(s)	65, 145
Kpn2I	TCCGGA	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	223, 265, 274
MaeII	ACGT	2 cut(s)	117, 187
MaeIII	GTNAC	2 cut(s)	36, 104
MalI	GATC	3 cut(s)	225, 267, 276
MboI	GATC	3 cut(s)	223, 265, 274
MboII	GAAGA	1 cut(s)	296
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	3 cut(s)	24, 130, 166
MroI	TCCGGA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	3 cut(s)	30, 88, 257
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	223, 265, 274
NlaIII	CATG	2 cut(s)	65, 145
PfeI	GAWTC	2 cut(s)	287, 322
Pfl23II	CGTACG	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	67
Ppu21I	YACGTR	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspLI	CGTACG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	2 cut(s)	161, 190
RsaNI	GTAC	2 cut(s)	160, 189
RseI	CAYNNNNRTG	1 cut(s)	257
Sau3AI	GATC	3 cut(s)	223, 265, 274
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	4 cut(s)	120, 190, 222, 243
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	3 cut(s)	24, 130, 166
SsiI	CCGC	2 cut(s)	246, 318
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	36, 42
TaiI	ACGT	2 cut(s)	120, 190
TaqI	TCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	24, 130, 166
TfiI	GAWTC	2 cut(s)	287, 322
TspDTI	ATGAA	1 cut(s)	130
TspGWI	ACGGA	3 cut(s)	30, 141, 315
Van91I	CCANNNNNTGG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.