Rroxscaffold_4G00331670

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012848
Physical Location & Seq
Reverse (-)
65629641 .. 65631376
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331670.1

Sequence Viewer

Length: 1101 bp
ATGAGGGTAGTGTTGATCGCCGTCGCTCTATTCTGCGCCATTGTTTCAACCACCGTTGTTGATTCCTGCTTACCAACAGACCTGGCAGCACTCAAAGCCGTCAAGGCCTCACTCACCGAATCCAAACTCGGCCTCTTCAACACATGGTCCGGCACCGACTGCTGCCTCAACTGGTACGGCGTCAGCTGCGACCCTTCAACTCGCCGTGTCGTCGACATTAACCTCCGCGGCGAGTCCGAGGACCCCATTCTCTCCAAGTCCGGCCAGTCCGGCTTCATGTCCGGCTCCATTGCCCCCGAGATTTGCAACCTCGACAGCCTCACCGCCCTCGTCCTCGCCGACTGGAAGGGAATCGCCGGCAACATCCCCCAATGCCTCACCTTTCTCTCTTCCCTCCGAATCCTCGACCTCGTCGGAAACAAAATCTCCGGCGTTATTCCGGCCGATATCGGCAAGCTGAAGATGCTCAGAGTCCTCAACCTTGCCGACAACCAGATCTCCGGCGGGATTCCGGCCAGCATGATCAACCTCGCCGGGCTAATGCACCTGGACCTCCGCAACAACAGACTCTCAGGCGAAATTCCGGCCGGATTTTCAAAGCTACAAATGTTGAGCCGAGCATTGCTGAGCGGGAACCAACTCACCGGATCTATCCCCGAGTCCATCGGCAACATGCCTCGCTTAGCTGACCTGGACCTGTCGAGGAACCAGATCTCAGGTTCGATACCAGACAGTCTCGGAAAAATGCGGGTTCTGTCGACACTCAACTTGGACGGAAACTCAATTTCCGGTCAGTTACCATCGGTGTTGTTGAGCAACCACGGTTTGGGTATCCTGAACTTGAGCCGGAACAGCATTGGGGGCAACATCCCTGACGTGTTTCACGGAAATTCTTACTTCATGGCTCTGGACTTGTCGTACAACAATTTGAAGGGGGCGATACCACGTACGCTGTCGTCGGCGAAGTATATCGGACACCTGGATCTGAGCCACAACCACCTTTGCGGGAACATTCCGGTGGGTGATCCGTTCGATCAAATGGAAGGGTCGTCGTTTACCAACAACGATTGTCTCTGCGGGAATCCGTTGAAGACTTGTTGA

Protein Analysis

366

Amino Acids

38.81

Weight (kDa)

6.29

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 25 - 64 3e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 99 - 205 2.5e-10 Leucine-rich repeat region
LRR_8 PF13855 123 - 166 6.5e-06 Leucine rich repeat
LRR_8 PF13855 209 - 262 4.8e-08 Leucine rich repeat
LRR_8 PF13855 276 - 334 3.1e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012848)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12610
fragaria_vesca FvH4_7g00720
malus_domestica MD02G1315200.v1.1 MD07G1006700.v1.1
prunus_persica Prupe.2G009800_v2.0.a1
pyrus_communis pycom02g26420 pycom07g00540
rosa_chinensis RchiOBHm_Chr1g0314931
rosa_laevigata RLG00000030754
rosa_multiflora Rmu_co8044478.1_g000001 Rmu_sc0005015.1_g000002 Rmu_sc0005168.1_g000009
rosa_roxburghii Rroxscaffold_4G00331670
rosa_rugosa Rorug01G0003100
rosa_samantha Rh1AG014000 Rh1BG005600 Rh1DG007600
rosa_wichuraiana Rw1G000660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 826
AccBSI CCGCTC 1 cut(s) 630
AccI GTMKAC 2 cut(s) 213, 758
AccII CGCG 1 cut(s) 228
AciI CCGC 9 cut(s) 226, 228, 324, 504, 556, 630, 748, 1005, 1077
AclWI GGATC 3 cut(s) 655, 990, 1019
AcoI YGGCCR 4 cut(s) 262, 441, 513, 585
AcsI RAATTY 2 cut(s) 579, 889
AcuI CTGAAG 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 3 cut(s) 176, 920, 949
AfiI CCNNNNNNNGG 1 cut(s) 826
AflIII ACRYGT 1 cut(s) 876
AgsI TTSAA 6 cut(s) 48, 139, 198, 597, 931, 1090
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 4 cut(s) 81, 546, 690, 978
AluBI AGCT 4 cut(s) 186, 457, 601, 686
AluI AGCT 4 cut(s) 186, 457, 601, 686
Alw26I GTCTC 2 cut(s) 740, 1076
AlwI GGATC 3 cut(s) 655, 990, 1019
Ama87I CYCGRG 2 cut(s) 296, 656
AoxI GGCC 6 cut(s) 105, 130, 262, 441, 513, 585
ApeKI GCWGC 3 cut(s) 86, 162, 186
ApoI RAATTY 2 cut(s) 579, 889
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 4 cut(s) 147, 241, 550, 694
AsuC2I CCSGG 1 cut(s) 535
AsuHPI GGTGA 5 cut(s) 106, 313, 370, 634, 1034
AvaI CYCGRG 2 cut(s) 296, 656
AvaII GGWCC 4 cut(s) 147, 241, 550, 694
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 1097
BbvI GCAGC 3 cut(s) 98, 149, 173
BccI CCATC 2 cut(s) 671, 808
BceAI ACGGC 4 cut(s) 5, 83, 189, 193
BciT130I CCWGG 4 cut(s) 83, 548, 692, 980
BciVI GTATCC 1 cut(s) 842
BclI TGATCA 1 cut(s) 522
BcnI CCSGG 1 cut(s) 535
BcoDI GTCTC 2 cut(s) 740, 1076
BfuI GTATCC 1 cut(s) 842
BglI GCCNNNNNGGC 2 cut(s) 104, 270
BglII AGATCT 2 cut(s) 495, 711
BisI GCNGC 4 cut(s) 87, 163, 187, 229
BlpI GCTNAGC 2 cut(s) 626, 682
BlsI GCNGC 4 cut(s) 88, 164, 188, 230
Bme1390I CCNGG 5 cut(s) 83, 535, 548, 692, 980
Bme18I GGWCC 4 cut(s) 147, 241, 550, 694
BmeT110I CYCGRG 2 cut(s) 296, 656
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 4 cut(s) 147, 241, 550, 694
BmiI GGNNCC 5 cut(s) 154, 243, 286, 635, 707
BmrFI CCNGG 5 cut(s) 83, 535, 548, 692, 980
BmsI GCATC 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 1097
Bpu1102I GCTNAGC 2 cut(s) 626, 682
BpuEI CTTGAG 1 cut(s) 862
BpuMI CCSGG 1 cut(s) 535
BsaAI YACGTR 1 cut(s) 947
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 226, 237, 820
BsaWI WCCGGW 3 cut(s) 644, 788, 1015
BsaXI ACNNNNNCTCC 4 cut(s) 410, 440, 482, 512
Bsc4I CCNNNNNNNGG 1 cut(s) 826
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 3 cut(s) 176, 265, 347
Bse3DI GCAATG 2 cut(s) 288, 620
BseBI CCWGG 4 cut(s) 83, 548, 692, 980
BseDI CCNNGG 3 cut(s) 226, 237, 820
BseGI GGATG 2 cut(s) 363, 867
BseLI CCNNNNNNNGG 1 cut(s) 826
BseMI GCAATG 2 cut(s) 288, 620
BseMII CTCAG 5 cut(s) 481, 585, 617, 729, 977
BseNI ACTGG 3 cut(s) 176, 265, 347
BseX3I CGGCCG 2 cut(s) 441, 585
BseXI GCAGC 3 cut(s) 98, 149, 173
Bsh1236I CGCG 1 cut(s) 228
Bsh1285I CGRYCG 2 cut(s) 444, 588
BshFI GGCC 6 cut(s) 107, 132, 264, 443, 515, 587
BshNI GGYRCC 1 cut(s) 152
BsiEI CGRYCG 2 cut(s) 444, 588
BsiHKCI CYCGRG 2 cut(s) 296, 656
BsiWI CGTACG 1 cut(s) 947
BslI CCNNNNNNNGG 1 cut(s) 826
BsmAI GTCTC 2 cut(s) 740, 1076
BsnI GGCC 6 cut(s) 107, 132, 264, 443, 515, 587
BsoBI CYCGRG 2 cut(s) 296, 656
Bsp143I GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
Bsp1720I GCTNAGC 2 cut(s) 626, 682
BspACI CCGC 9 cut(s) 226, 228, 324, 504, 556, 630, 748, 1005, 1077
BspANI GGCC 6 cut(s) 107, 132, 264, 443, 515, 587
BspCNI CTCAG 5 cut(s) 480, 584, 618, 728, 978
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 5 cut(s) 154, 243, 286, 635, 707
BspPI GGATC 3 cut(s) 655, 990, 1019
BspT107I GGYRCC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 630
BsrDI GCAATG 2 cut(s) 288, 620
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 3 cut(s) 176, 265, 347
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 226, 237, 820
BssMI GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
BssNI GRCGYC 1 cut(s) 180
Bst2UI CCWGG 4 cut(s) 83, 548, 692, 980
Bst4CI ACNGT 3 cut(s) 55, 734, 824
Bst6I CTCTTC 2 cut(s) 140, 394
BstACI GRCGYC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 947
BstC8I GCNNGC 3 cut(s) 358, 455, 517
BstDEI CTNAG 6 cut(s) 467, 571, 626, 682, 715, 986
BstDSI CCRYGG 2 cut(s) 226, 820
BstF5I GGATG 2 cut(s) 363, 867
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 8 cut(s) 18, 498, 525, 650, 714, 985, 1027, 1036
BstMAI GTCTC 2 cut(s) 740, 1076
BstMBI GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
BstMCI CGRYCG 2 cut(s) 444, 588
BstMWI GCNNNNNNNGC 8 cut(s) 95, 104, 159, 186, 270, 463, 852, 861
BstNI CCWGG 4 cut(s) 83, 548, 692, 980
BstNSI RCATGY 1 cut(s) 676
BstSCI CCNGG 5 cut(s) 81, 533, 546, 690, 978
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 98, 149, 173
BstV2I GAAGAC 1 cut(s) 1097
BstX2I RGATCY 4 cut(s) 495, 647, 711, 982
BstYI RGATCY 4 cut(s) 495, 647, 711, 982
BstZI CGGCCG 2 cut(s) 441, 585
BsuI GTATCC 1 cut(s) 842
BsuRI GGCC 6 cut(s) 107, 132, 264, 443, 515, 587
BtgI CCRYGG 2 cut(s) 226, 820
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 2 cut(s) 363, 867
Cac8I GCNNGC 3 cut(s) 358, 455, 517
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 4 cut(s) 147, 241, 550, 694
Cfr42I CCGCGG 1 cut(s) 229
CseI GACGC 1 cut(s) 169
Csp6I GTAC 3 cut(s) 175, 919, 948
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviAII CATG 5 cut(s) 144, 277, 520, 673, 901
CviQI GTAC 3 cut(s) 175, 919, 948
DdeI CTNAG 6 cut(s) 467, 571, 626, 682, 715, 986
DpnI GATC 8 cut(s) 17, 497, 524, 649, 713, 984, 1026, 1035
DpnII GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
EaeI YGGCCR 4 cut(s) 262, 441, 513, 585
EagI CGGCCG 2 cut(s) 441, 585
Eam1104I CTCTTC 2 cut(s) 140, 394
EarI CTCTTC 2 cut(s) 140, 394
EclXI CGGCCG 2 cut(s) 441, 585
Eco147I AGGCCT 1 cut(s) 107
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 4 cut(s) 147, 241, 550, 694
Eco52I CGGCCG 2 cut(s) 441, 585
Eco57I CTGAAG 1 cut(s) 479
Eco88I CYCGRG 2 cut(s) 296, 656
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 4 cut(s) 81, 546, 690, 978
EcoRV GATATC 1 cut(s) 448
FaeI CATG 5 cut(s) 147, 280, 523, 676, 904
FaiI YATR 6 cut(s) 145, 278, 521, 674, 902, 969
FatI CATG 5 cut(s) 143, 276, 519, 672, 900
FauI CCCGC 5 cut(s) 497, 623, 741, 998, 1070
FbaI TGATCA 1 cut(s) 522
FblI GTMKAC 2 cut(s) 213, 758
Fnu4HI GCNGC 4 cut(s) 87, 163, 187, 229
FokI GGATG 2 cut(s) 350, 854
Fsp4HI GCNGC 4 cut(s) 87, 163, 187, 229
GlaI GCGC 1 cut(s) 37
GluI GCNGC 4 cut(s) 87, 163, 187, 229
HaeIII GGCC 6 cut(s) 107, 132, 264, 443, 515, 587
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 5 cut(s) 147, 280, 523, 676, 904
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 2 cut(s) 214, 759
HindII GTYRAC 2 cut(s) 214, 759
HphI GGTGA 5 cut(s) 106, 313, 370, 634, 1034
Hpy166II GTNNAC 3 cut(s) 214, 759, 1056
Hpy188I TCNGA 7 cut(s) 238, 398, 416, 470, 740, 974, 987
Hpy188III TCNNGA 2 cut(s) 835, 908
Hpy8I GTNNAC 3 cut(s) 214, 759, 1056
Hpy99I CGWCG 5 cut(s) 26, 215, 416, 961, 1054
HpyAV CCTTC 4 cut(s) 204, 340, 925, 1037
HpyCH4III ACNGT 3 cut(s) 55, 734, 824
HpyCH4IV ACGT 2 cut(s) 876, 946
HpyCH4V TGCA 2 cut(s) 306, 544
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 104, 159, 186, 270, 463, 852, 861
HpyF3I CTNAG 6 cut(s) 467, 571, 626, 682, 715, 986
HpySE526I ACGT 2 cut(s) 876, 946
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 5 cut(s) 147, 280, 523, 676, 904
HspAI GCGC 1 cut(s) 36
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 522
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 3 cut(s) 98, 149, 173
LweI GCATC 1 cut(s) 453
MaeII ACGT 2 cut(s) 876, 946
MaeIII GTNAC 1 cut(s) 795
MalI GATC 8 cut(s) 17, 497, 524, 649, 713, 984, 1026, 1035
MbiI CCGCTC 1 cut(s) 630
MboI GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
MboII GAAGA 3 cut(s) 127, 381, 472
MflI RGATCY 4 cut(s) 495, 647, 711, 982
MluCI AATT 4 cut(s) 579, 783, 889, 925
MlyI GAGTC 4 cut(s) 242, 480, 561, 668
MmeI TCCRAC 1 cut(s) 394
MroNI GCCGGC 1 cut(s) 356
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 1016
MspA1I CMGCKG 2 cut(s) 186, 228
MspR9I CCNGG 5 cut(s) 83, 535, 548, 692, 980
MvaI CCWGG 4 cut(s) 83, 548, 692, 980
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 8 cut(s) 95, 104, 159, 186, 270, 463, 852, 861
NaeI GCCGGC 1 cut(s) 358
NciI CCSGG 1 cut(s) 535
NdeII GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 5 cut(s) 147, 280, 523, 676, 904
NlaIV GGNNCC 5 cut(s) 154, 243, 286, 635, 707
NmeAIII GCCGAG 2 cut(s) 108, 641
NspI RCATGY 1 cut(s) 676
PceI AGGCCT 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 6 cut(s) 62, 119, 351, 399, 508, 1081
Pfl23II CGTACG 1 cut(s) 947
PflFI GACNNNGTC 1 cut(s) 410
PflMI CCANNNNNTGG 1 cut(s) 826
PkrI GCNGC 4 cut(s) 88, 164, 188, 230
PleI GAGTC 4 cut(s) 241, 479, 561, 667
PpsI GAGTC 4 cut(s) 241, 479, 561, 667
Ppu21I YACGTR 1 cut(s) 947
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 4 cut(s) 81, 546, 690, 978
PspGI CCWGG 4 cut(s) 81, 546, 690, 978
PspLI CGTACG 1 cut(s) 947
PspN4I GGNNCC 5 cut(s) 154, 243, 286, 635, 707
PspPI GGNCC 4 cut(s) 147, 241, 550, 694
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 4 cut(s) 495, 647, 711, 982
PsyI GACNNNGTC 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 3 cut(s) 176, 920, 949
RsaNI GTAC 3 cut(s) 175, 919, 948
RseI CAYNNNNRTG 1 cut(s) 1016
SacII CCGCGG 1 cut(s) 229
SalI GTCGAC 2 cut(s) 212, 757
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 4 cut(s) 87, 163, 187, 229
Sau3AI GATC 8 cut(s) 15, 495, 522, 647, 711, 982, 1024, 1033
Sau96I GGNCC 4 cut(s) 147, 241, 550, 694
SchI GAGTC 4 cut(s) 242, 480, 561, 668
ScrFI CCNGG 5 cut(s) 83, 535, 548, 692, 980
SfaNI GCATC 1 cut(s) 453
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 4 cut(s) 147, 241, 550, 694
SmiMI CAYNNNNRTG 1 cut(s) 1016
SmlI CTYRAG 1 cut(s) 841
SmoI CTYRAG 1 cut(s) 841
Sse9I AATT 4 cut(s) 579, 783, 889, 925
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 9 cut(s) 226, 228, 324, 504, 556, 630, 748, 1005, 1077
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 5 cut(s) 81, 533, 546, 690, 978
TaaI ACNGT 3 cut(s) 55, 734, 824
TaiI ACGT 2 cut(s) 879, 949
TaqI TCGA 7 cut(s) 213, 312, 405, 701, 722, 758, 1032
TasI AATT 4 cut(s) 579, 783, 889, 925
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 6 cut(s) 62, 119, 351, 399, 508, 1081
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 3 cut(s) 86, 162, 186
TspDTI ATGAA 2 cut(s) 265, 889
TspGWI ACGGA 4 cut(s) 789, 900, 1017, 1074
Tth111I GACNNNGTC 1 cut(s) 410
Van91I CCANNNNNTGG 1 cut(s) 826
VpaK11BI GGWCC 4 cut(s) 147, 241, 550, 694
XapI RAATTY 2 cut(s) 579, 889
XceI RCATGY 1 cut(s) 676
XmiI GTMKAC 2 cut(s) 213, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.