Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0012848

Physical Location & Seq

Genomic Coordinates Reverse (-)

66912296 .. 66914721

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030754

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGTTTCAAGGCCTCAACAACCTTGCAAAAGCTTTAGCCTCACCACCCTCGTCCTCGCCGACTGGAAGGGAATCACCGGCAACATCCCCCAATGCCTCACCTTCCTCTCTTCCCTGCGAGTCCTCGACCTCATCGGAAACAAAATCTCTGGCGTCATTCCGGCCGATATCGGCAAGCTGAAGATGCTCAGAGTCCTCAACCTTGCCGACAACCAGATCTCAGGCCAGATTCCGGCCAGCATGATCAACCTCGCCGGGTTAATGCACCTGGACCTCCGCAACAACAGACTCTCAGGCGAAATTCCGGCCGGATTTTCAAAGCTACGAATGTTGAGCCGAGCATTGTTGAGCGGGAACCAACTCACCGGAGCTATCCCGGATTCCATAAGCAACATGCCTCGCTTAGCTGACCTGGACCTGTCGAGGAACCAGATCTCGGGTTCGATACCGGACAGTCTCGGAAACATGAAGGTACTGTCGACGCTCAACTTGGACGGAAACTCAATCTCCGGTCAGTTACCTTCGGCCCTGTTGAGCAACCACGGTTTGGGTATCCTGAACTTGAGCCGGAACAGCATTGGCGGCAACATCCCTGACGTGTTTCACGGAAATTCTTACTTCATGGCTCTGGATTTGTCGTACAACAATTTGAAGGGGGCGATACCACGTACACTGTCGTCGGCGAAGTATATCGGACACCTGGATCTGAGCCACAACCACCTGTGCGGGAACATTCCGGTGGGTGATCCGTTCGATCATCTGGAAGAGCCGTCGTTTACCAACAACGATTGTCTCTGCGGGAATCCGTTGAAGACTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

274

Amino Acids

29.23

Weight (kDa)

8.23

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	13 - 73	1.6e-07	Leucine rich repeat
LRR_14	PF23598	19 - 112	2.4e-10	Leucine-rich repeat region
LRR_8	PF13855	116 - 169	6.2e-09	Leucine rich repeat
LRR_8	PF13855	183 - 241	7.2e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12610
fragaria_vesca	FvH4_7g00720
malus_domestica	MD02G1315200.v1.1 MD07G1006700.v1.1
prunus_persica	Prupe.2G009800_v2.0.a1
pyrus_communis	pycom02g26420 pycom07g00540
rosa_chinensis	RchiOBHm_Chr1g0314931
rosa_laevigata	RLG00000030754
rosa_multiflora	Rmu_co8044478.1_g000001 Rmu_sc0005015.1_g000002 Rmu_sc0005168.1_g000009
rosa_roxburghii	Rroxscaffold_4G00331670
rosa_rugosa	Rorug01G0003100
rosa_samantha	Rh1AG014000 Rh1BG005600 Rh1DG007600
rosa_wichuraiana	Rw1G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccBSI	CCGCTC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	479
AciI	CCGC	5 cut(s)	277, 351, 582, 726, 798
AclWI	GGATC	2 cut(s)	711, 740
AcoI	YGGCCR	3 cut(s)	162, 234, 306
AcsI	RAATTY	2 cut(s)	300, 610
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	3 cut(s)	474, 641, 670
AfiI	CCNNNNNNNGG	3 cut(s)	232, 436, 547
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	4 cut(s)	9, 318, 652, 811
AjiI	CACGTC	1 cut(s)	598
AjnI	CCWGG	3 cut(s)	267, 411, 699
AluBI	AGCT	5 cut(s)	33, 178, 322, 371, 407
AluI	AGCT	5 cut(s)	33, 178, 322, 371, 407
Alw26I	GTCTC	2 cut(s)	461, 797
AlwI	GGATC	2 cut(s)	711, 740
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	6 cut(s)	11, 162, 223, 234, 306, 525
ApoI	RAATTY	2 cut(s)	300, 610
AspS9I	GGNCC	3 cut(s)	271, 415, 526
AsuC2I	CCSGG	2 cut(s)	256, 377
AsuHPI	GGTGA	5 cut(s)	34, 67, 91, 355, 755
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	2 cut(s)	271, 415
BbsI	GAAGAC	1 cut(s)	818
BceAI	ACGGC	1 cut(s)	754
BciT130I	CCWGG	3 cut(s)	269, 413, 701
BciVI	GTATCC	1 cut(s)	563
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	2 cut(s)	256, 377
BcoDI	GTCTC	2 cut(s)	461, 797
BfuI	GTATCC	1 cut(s)	563
BglII	AGATCT	2 cut(s)	216, 432
BisI	GCNGC	1 cut(s)	583
BlpI	GCTNAGC	1 cut(s)	403
BlsI	GCNGC	1 cut(s)	584
Bme1390I	CCNGG	5 cut(s)	256, 269, 377, 413, 701
Bme18I	GGWCC	2 cut(s)	271, 415
BmeT110I	CYCGRG	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	598
BmgT120I	GGNCC	3 cut(s)	271, 415, 526
BmiI	GGNNCC	2 cut(s)	356, 428
BmrFI	CCNGG	5 cut(s)	256, 269, 377, 413, 701
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	818
Bpu1102I	GCTNAGC	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	583
BpuMI	CCSGG	2 cut(s)	256, 377
BsaAI	YACGTR	1 cut(s)	668
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	541
BsaWI	WCCGGW	4 cut(s)	365, 448, 509, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 436, 547
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	68
BseBI	CCWGG	3 cut(s)	269, 413, 701
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	84, 588
BseLI	CCNNNNNNNGG	3 cut(s)	232, 436, 547
BseMII	CTCAG	4 cut(s)	202, 234, 306, 698
BseNI	ACTGG	1 cut(s)	68
BseX3I	CGGCCG	2 cut(s)	162, 306
Bsh1285I	CGRYCG	2 cut(s)	165, 309
BshFI	GGCC	6 cut(s)	13, 164, 225, 236, 308, 527
BsiEI	CGRYCG	2 cut(s)	165, 309
BsiHKCI	CYCGRG	1 cut(s)	436
BslI	CCNNNNNNNGG	3 cut(s)	232, 436, 547
BsmAI	GTCTC	2 cut(s)	461, 797
BsnI	GGCC	6 cut(s)	13, 164, 225, 236, 308, 527
BsoBI	CYCGRG	1 cut(s)	436
Bsp143I	GATC	6 cut(s)	216, 243, 432, 703, 745, 754
Bsp1720I	GCTNAGC	1 cut(s)	403
BspACI	CCGC	5 cut(s)	277, 351, 582, 726, 798
BspANI	GGCC	6 cut(s)	13, 164, 225, 236, 308, 527
BspCNI	CTCAG	4 cut(s)	201, 233, 305, 699
BspLI	GGNNCC	2 cut(s)	356, 428
BspPI	GGATC	2 cut(s)	711, 740
BspQI	GCTCTTC	1 cut(s)	759
BsrBI	CCGCTC	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	6 cut(s)	216, 243, 432, 703, 745, 754
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	269, 413, 701
Bst4CI	ACNGT	4 cut(s)	455, 477, 545, 675
Bst6I	CTCTTC	2 cut(s)	115, 759
BstACI	GRCGYC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	176, 238
BstDEI	CTNAG	5 cut(s)	188, 220, 292, 403, 707
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	2 cut(s)	84, 588
BstKTI	GATC	6 cut(s)	219, 246, 435, 706, 748, 757
BstMAI	GTCTC	2 cut(s)	461, 797
BstMBI	GATC	6 cut(s)	216, 243, 432, 703, 745, 754
BstMCI	CGRYCG	2 cut(s)	165, 309
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 573, 582
BstNI	CCWGG	3 cut(s)	269, 413, 701
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	5 cut(s)	254, 267, 375, 411, 699
BstV2I	GAAGAC	1 cut(s)	818
BstX2I	RGATCY	3 cut(s)	216, 432, 703
BstYI	RGATCY	3 cut(s)	216, 432, 703
BstZI	CGGCCG	2 cut(s)	162, 306
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	6 cut(s)	13, 164, 225, 236, 308, 527
BtgI	CCRYGG	1 cut(s)	541
BtrI	CACGTC	1 cut(s)	598
BtsCI	GGATG	2 cut(s)	84, 588
BtsIMutI	CAGTG	1 cut(s)	671
Cac8I	GCNNGC	2 cut(s)	176, 238
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	3 cut(s)	271, 415, 526
CseI	GACGC	2 cut(s)	142, 490
Csp6I	GTAC	3 cut(s)	473, 640, 669
CviAII	CATG	4 cut(s)	241, 394, 466, 622
CviQI	GTAC	3 cut(s)	473, 640, 669
DdeI	CTNAG	5 cut(s)	188, 220, 292, 403, 707
DpnI	GATC	6 cut(s)	218, 245, 434, 705, 747, 756
DpnII	GATC	6 cut(s)	216, 243, 432, 703, 745, 754
EaeI	YGGCCR	3 cut(s)	162, 234, 306
EagI	CGGCCG	2 cut(s)	162, 306
Eam1104I	CTCTTC	2 cut(s)	115, 759
EarI	CTCTTC	2 cut(s)	115, 759
EclXI	CGGCCG	2 cut(s)	162, 306
Eco147I	AGGCCT	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	271, 415
Eco52I	CGGCCG	2 cut(s)	162, 306
Eco57I	CTGAAG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	436
EcoRII	CCWGG	3 cut(s)	267, 411, 699
EcoRV	GATATC	1 cut(s)	169
FaeI	CATG	4 cut(s)	244, 397, 469, 625
FaiI	YATR	6 cut(s)	242, 386, 395, 467, 623, 690
FatI	CATG	4 cut(s)	240, 393, 465, 621
FauI	CCCGC	3 cut(s)	344, 719, 791
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	1 cut(s)	583
FokI	GGATG	2 cut(s)	71, 575
Fsp4HI	GCNGC	1 cut(s)	583
GluI	GCNGC	1 cut(s)	583
HaeIII	GGCC	6 cut(s)	13, 164, 225, 236, 308, 527
HgaI	GACGC	2 cut(s)	142, 490
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	4 cut(s)	244, 397, 469, 625
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	7 cut(s)	72, 120, 192, 229, 288, 380, 802
HphI	GGTGA	5 cut(s)	34, 67, 91, 355, 755
Hpy166II	GTNNAC	3 cut(s)	480, 671, 777
Hpy188I	TCNGA	5 cut(s)	137, 191, 461, 695, 708
Hpy188III	TCNNGA	3 cut(s)	556, 629, 761
Hpy8I	GTNNAC	3 cut(s)	480, 671, 777
Hpy99I	CGWCG	3 cut(s)	484, 682, 775
HpyAV	CCTTC	5 cut(s)	61, 112, 463, 531, 646
HpyCH4III	ACNGT	4 cut(s)	455, 477, 545, 675
HpyCH4IV	ACGT	2 cut(s)	597, 667
HpyCH4V	TGCA	2 cut(s)	27, 265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 573, 582
HpyF3I	CTNAG	5 cut(s)	188, 220, 292, 403, 707
HpySE526I	ACGT	2 cut(s)	597, 667
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	4 cut(s)	244, 397, 469, 625
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	6 cut(s)	216, 243, 432, 703, 745, 754
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	1 cut(s)	368
LweI	GCATC	1 cut(s)	174
MaeII	ACGT	2 cut(s)	597, 667
MaeIII	GTNAC	1 cut(s)	516
MalI	GATC	6 cut(s)	218, 245, 434, 705, 747, 756
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	6 cut(s)	216, 243, 432, 703, 745, 754
MboII	GAAGA	3 cut(s)	102, 193, 776
MflI	RGATCY	3 cut(s)	216, 432, 703
MluCI	AATT	3 cut(s)	300, 610, 646
MlyI	GAGTC	3 cut(s)	129, 201, 282
MseI	TTAA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	737
MspR9I	CCNGG	5 cut(s)	256, 269, 377, 413, 701
MvaI	CCWGG	3 cut(s)	269, 413, 701
MwoI	GCNNNNNNNGC	3 cut(s)	184, 573, 582
NciI	CCSGG	2 cut(s)	256, 377
NdeII	GATC	6 cut(s)	216, 243, 432, 703, 745, 754
NlaIII	CATG	4 cut(s)	244, 397, 469, 625
NlaIV	GGNNCC	2 cut(s)	356, 428
NmeAIII	GCCGAG	1 cut(s)	362
NspI	RCATGY	1 cut(s)	397
PceI	AGGCCT	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	72, 229, 380, 802
PflMI	CCANNNNNTGG	1 cut(s)	547
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	584
PleI	GAGTC	3 cut(s)	128, 200, 282
PpsI	GAGTC	3 cut(s)	128, 200, 282
Ppu21I	YACGTR	1 cut(s)	668
Psp6I	CCWGG	3 cut(s)	267, 411, 699
PspGI	CCWGG	3 cut(s)	267, 411, 699
PspN4I	GGNNCC	2 cut(s)	356, 428
PspPI	GGNCC	3 cut(s)	271, 415, 526
PsuI	RGATCY	3 cut(s)	216, 432, 703
RsaI	GTAC	3 cut(s)	474, 641, 670
RsaNI	GTAC	3 cut(s)	473, 640, 669
RseI	CAYNNNNRTG	1 cut(s)	737
SalI	GTCGAC	1 cut(s)	478
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	1 cut(s)	583
Sau3AI	GATC	6 cut(s)	216, 243, 432, 703, 745, 754
Sau96I	GGNCC	3 cut(s)	271, 415, 526
SchI	GAGTC	3 cut(s)	129, 201, 282
ScrFI	CCNGG	5 cut(s)	256, 269, 377, 413, 701
SfaNI	GCATC	1 cut(s)	174
SinI	GGWCC	2 cut(s)	271, 415
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
Sse9I	AATT	3 cut(s)	300, 610, 646
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	5 cut(s)	277, 351, 582, 726, 798
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	5 cut(s)	254, 267, 375, 411, 699
TaaI	ACNGT	4 cut(s)	455, 477, 545, 675
TaiI	ACGT	2 cut(s)	600, 670
TaqI	TCGA	5 cut(s)	126, 422, 443, 479, 753
TasI	AATT	3 cut(s)	300, 610, 646
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	4 cut(s)	72, 229, 380, 802
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	1 cut(s)	678
TspDTI	ATGAA	2 cut(s)	482, 610
TspGWI	ACGGA	4 cut(s)	510, 621, 738, 795
TspRI	CASTG	1 cut(s)	678
Van91I	CCANNNNNTGG	1 cut(s)	547
VpaK11BI	GGWCC	2 cut(s)	271, 415
XapI	RAATTY	2 cut(s)	300, 610
XceI	RCATGY	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.