MD02G1315200.v1.1

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012848
Physical Location & Seq
Reverse (-)
37004630 .. 37005904
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1315200.v1.1.491

Sequence Viewer

Length: 1275 bp
ATGCACGCTGAACCTCTGTCCCTCTCTGCCTCTCTCCCGTATCCTTGCTGCTGCTCCTGCTTATATTATCACTCTCACTCCATCAACTTCCAAACCCCCATCTCCCCTTCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCATGAAGATGGTGAGGTTGCTCTTAATCTCAGTGGCAACATTCTGTGCCACTGTCTCAACAGTGAGCTCTTCTTGTTCGCCATCAGACCTAGCAGCACTTCAATCCATCAAAACCGGCCTCACCGATTCCTCCTTGGGCATCTTCAACTCTTGGGTCGGAACAGATTGCTGCGTAAACTGGTACGGAGTCAGCTGCGATCCCACAACCGGCCGAGTCTTCGACATTAATCTCCGAGGCGAGTCGGAAGACCCGATACTCACGAAATCAGGCCAGTCCGGGTTTATGTCCGGCTCTATCTCACCCAAAATTTGCAGCCTCGACCGTCTCACCACCCTCGTTCTAGCCGACTGGAAGGGAGTCACCGGCGAGATTCCCCAATGCGTCGCCACCCTCTCCAATCTCCGAGTCCTCGACCTTGTTGGAAACAAGATTTCGGGCGGGATTCCGGCCAATATCGGCAACCTCAAGATGCTCACGGTCCTCAACCTCGCCGATAACCAGATCTCCGGTAAGATTCCGGCGAGTCTCGTGAGCCTCTCAGGGCTAATGCACCTGGACCTCAGCAACAACCAAATCTCGGGCGAGATACCGGCCGATTTCGGAAAACTCAAGATGCTCAGCCGGGCTCTGCTGTACCGGAACCAGCTCACCGGGTCAATCCCGGACTCCATCGGCAACATGAACCGGTTGGCCGACCTGGACCTGTCCAGGAACCAATTATCGGGTCGCGTACCGGATTGTCTCGGGAAAATGCGGGTTCTTTCGACGTTGAATTTGGACGGAAACTCGTTTTCTGGTCAATTACCGGCGTCCCTTTTGAGCAATCGGGGTTTGGGGATCTTGAATATGAGCCGAAACGGGTTTGAAGGTAACATACCGGACGTTTTCCACGAAAATTCATACTTTATGGTGCTCGATTTGTCGTACAACAAATTGAAGGGTTCGATTCCCGGTTCGTTATCGTCGGCGAAATATATCGGGCACTTGGATCTGAGCCACAACCACCTGTGCGGGGCGATTCCTGTGGGGAACCCGTTCGATCACCTCGGAGCGTCGTCGTTTGCCAACAATGATTGCCTCTGCGGGAACCCGCTGAGTACCTGTTGA

Protein Analysis

425

Amino Acids

44.97

Weight (kDa)

6.48

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 83 - 122 4e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 157 - 323 1.4e-14 Leucine-rich repeat region
LRR_8 PF13855 188 - 248 4.5e-09 Leucine rich repeat
LRR_8 PF13855 214 - 272 2.5e-06 Leucine rich repeat
LRR_8 PF13855 269 - 319 2e-06 Leucine rich repeat
LRR_8 PF13855 333 - 392 1.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012848)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12610
fragaria_vesca FvH4_7g00720
malus_domestica MD02G1315200.v1.1 MD07G1006700.v1.1
prunus_persica Prupe.2G009800_v2.0.a1
pyrus_communis pycom02g26420 pycom07g00540
rosa_chinensis RchiOBHm_Chr1g0314931
rosa_laevigata RLG00000030754
rosa_multiflora Rmu_co8044478.1_g000001 Rmu_sc0005015.1_g000002 Rmu_sc0005168.1_g000009
rosa_roxburghii Rroxscaffold_4G00331670
rosa_rugosa Rorug01G0003100
rosa_samantha Rh1AG014000 Rh1BG005600 Rh1DG007600
rosa_wichuraiana Rw1G000660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 897
AciI CCGC 5 cut(s) 606, 922, 1179, 1251, 1259
AclWI GGATC 3 cut(s) 359, 1013, 1164
AcoI YGGCCR 4 cut(s) 376, 615, 759, 858
AcsI RAATTY 3 cut(s) 474, 940, 1063
AcyI GRCGYC 1 cut(s) 977
AfaI GTAC 5 cut(s) 350, 803, 900, 1094, 1267
AfiI CCNNNNNNNGG 4 cut(s) 374, 745, 889, 1180
AgeI ACCGGT 1 cut(s) 852
AgsI TTSAA 6 cut(s) 269, 313, 940, 1012, 1034, 1105
AjnI CCWGG 3 cut(s) 720, 864, 875
AluBI AGCT 3 cut(s) 234, 360, 814
AluI AGCT 3 cut(s) 234, 360, 814
Alw21I GWGCWC 2 cut(s) 236, 1083
Alw26I GTCTC 4 cut(s) 226, 497, 698, 914
AlwI GGATC 3 cut(s) 359, 1013, 1164
Ama87I CYCGRG 2 cut(s) 745, 911
AoxI GGCC 6 cut(s) 283, 376, 436, 615, 759, 858
ApeKI GCWGC 6 cut(s) 48, 51, 260, 336, 360, 480
ApoI RAATTY 3 cut(s) 474, 940, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 925, 957
AseI ATTAAT 1 cut(s) 393
AsiGI ACCGGT 1 cut(s) 852
Asp700I GAANNNNTTC 1 cut(s) 1202
AspS9I GGNCC 3 cut(s) 646, 724, 868
AsuC2I CCSGG 5 cut(s) 445, 791, 820, 830, 1119
AsuHPI GGTGA 7 cut(s) 190, 280, 459, 487, 520, 808, 1202
AvaI CYCGRG 2 cut(s) 745, 911
AvaII GGWCC 3 cut(s) 646, 724, 868
BaeGI GKGCMC 1 cut(s) 1152
BanII GRGCYC 2 cut(s) 236, 796
BarI GAAGNNNNNNTAC 4 cut(s) 405, 437, 1026, 1058
BauI CACGAG 1 cut(s) 695
BbsI GAAGAC 2 cut(s) 376, 420
Bbv12I GWGCWC 2 cut(s) 236, 1083
BbvCI CCTCAGC 1 cut(s) 728
BbvI GCAGC 6 cut(s) 35, 38, 272, 323, 347, 492
BccI CCATC 7 cut(s) 89, 107, 119, 169, 256, 281, 845
BciT130I CCWGG 3 cut(s) 722, 866, 877
BciVI GTATCC 1 cut(s) 51
BcnI CCSGG 5 cut(s) 445, 791, 820, 830, 1119
BcoDI GTCTC 4 cut(s) 226, 497, 698, 914
BfaI CTAG 2 cut(s) 257, 509
BfuI GTATCC 1 cut(s) 51
BglII AGATCT 1 cut(s) 669
BisI GCNGC 6 cut(s) 49, 52, 261, 337, 361, 481
BlpI GCTNAGC 1 cut(s) 785
BlsI GCNGC 6 cut(s) 50, 53, 262, 338, 362, 482
Bme1390I CCNGG 8 cut(s) 445, 722, 791, 820, 830, 866, 877, 1119
Bme18I GGWCC 3 cut(s) 646, 724, 868
BmeT110I CYCGRG 2 cut(s) 745, 911
BmgT120I GGNCC 3 cut(s) 646, 724, 868
BmiI GGNNCC 4 cut(s) 809, 881, 1199, 1256
BmrFI CCNGG 8 cut(s) 445, 722, 791, 820, 830, 866, 877, 1119
BmsI GCATC 3 cut(s) 315, 627, 771
BpiI GAAGAC 2 cut(s) 376, 420
Bpu10I CCTNAGC 1 cut(s) 728
Bpu1102I GCTNAGC 1 cut(s) 785
BpuEI CTTGAG 2 cut(s) 617, 761
BpuMI CCSGG 5 cut(s) 445, 791, 820, 830, 1119
BsaHI GRCGYC 1 cut(s) 977
BsaJI CCNNGG 3 cut(s) 300, 400, 1213
BsaWI WCCGGW 5 cut(s) 674, 804, 852, 901, 1045
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 656, 686
Bsc4I CCNNNNNNNGG 4 cut(s) 374, 745, 889, 1180
Bse118I RCCGGY 6 cut(s) 281, 374, 530, 757, 852, 973
Bse1I ACTGG 3 cut(s) 350, 439, 521
BseBI CCWGG 3 cut(s) 722, 866, 877
BseDI CCNNGG 3 cut(s) 300, 400, 1213
BseLI CCNNNNNNNGG 4 cut(s) 374, 745, 889, 1180
BseMII CTCAG 6 cut(s) 210, 720, 742, 799, 1151, 1253
BseNI ACTGG 3 cut(s) 350, 439, 521
BseSI GKGCMC 1 cut(s) 1152
BseX3I CGGCCG 2 cut(s) 376, 759
BseXI GCAGC 6 cut(s) 35, 38, 272, 323, 347, 492
Bsh1236I CGCG 1 cut(s) 897
Bsh1285I CGRYCG 3 cut(s) 379, 490, 762
BshFI GGCC 6 cut(s) 285, 378, 438, 617, 761, 860
BshTI ACCGGT 1 cut(s) 852
BsiEI CGRYCG 3 cut(s) 379, 490, 762
BsiHKAI GWGCWC 2 cut(s) 236, 1083
BsiHKCI CYCGRG 2 cut(s) 745, 911
BslFI GGGAC 2 cut(s) 4, 964
BslI CCNNNNNNNGG 4 cut(s) 374, 745, 889, 1180
BsmAI GTCTC 4 cut(s) 226, 497, 698, 914
BsmBI CGTCTC 1 cut(s) 497
BsmFI GGGAC 2 cut(s) 4, 964
BsnI GGCC 6 cut(s) 285, 378, 438, 617, 761, 860
BsoBI CYCGRG 2 cut(s) 745, 911
Bsp1286I GDGCHC 4 cut(s) 236, 796, 1083, 1152
Bsp143I GATC 5 cut(s) 364, 669, 1005, 1156, 1207
Bsp1720I GCTNAGC 1 cut(s) 785
BspACI CCGC 5 cut(s) 606, 922, 1179, 1251, 1259
BspANI GGCC 6 cut(s) 285, 378, 438, 617, 761, 860
BspCNI CTCAG 6 cut(s) 209, 719, 741, 798, 1152, 1254
BspFNI CGCG 1 cut(s) 897
BspLI GGNNCC 4 cut(s) 809, 881, 1199, 1256
BspPI GGATC 3 cut(s) 359, 1013, 1164
BspQI GCTCTTC 1 cut(s) 241
BsrFI RCCGGY 6 cut(s) 281, 374, 530, 757, 852, 973
BsrI ACTGG 3 cut(s) 350, 439, 521
BssAI RCCGGY 6 cut(s) 281, 374, 530, 757, 852, 973
BssECI CCNNGG 3 cut(s) 300, 400, 1213
BssMI GATC 5 cut(s) 364, 669, 1005, 1156, 1207
BssNI GRCGYC 1 cut(s) 977
BssSI CACGAG 1 cut(s) 695
BssT1I CCWWGG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 695
Bst2UI CCWGG 3 cut(s) 722, 866, 877
Bst4CI ACNGT 4 cut(s) 220, 229, 491, 646
Bst6I CTCTTC 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 977
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 6 cut(s) 196, 706, 728, 785, 1160, 1262
BstFNI CGCG 1 cut(s) 897
BstKTI GATC 5 cut(s) 367, 672, 1008, 1159, 1210
BstMAI GTCTC 4 cut(s) 226, 497, 698, 914
BstMBI GATC 5 cut(s) 364, 669, 1005, 1156, 1207
BstMCI CGRYCG 3 cut(s) 379, 490, 762
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNI CCWGG 3 cut(s) 722, 866, 877
BstSCI CCNGG 8 cut(s) 443, 720, 789, 818, 828, 864, 875, 1117
BstSLI GKGCMC 1 cut(s) 1152
BstUI CGCG 1 cut(s) 897
BstV1I GCAGC 6 cut(s) 35, 38, 272, 323, 347, 492
BstV2I GAAGAC 2 cut(s) 376, 420
BstX2I RGATCY 3 cut(s) 669, 1005, 1156
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 3 cut(s) 669, 1005, 1156
BstZI CGGCCG 2 cut(s) 376, 759
BsuI GTATCC 1 cut(s) 51
BsuRI GGCC 6 cut(s) 285, 378, 438, 617, 761, 860
BtsIMutI CAGTG 3 cut(s) 204, 216, 234
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 6 cut(s) 281, 374, 530, 757, 852, 973
Cfr13I GGNCC 3 cut(s) 646, 724, 868
CseI GACGC 3 cut(s) 538, 966, 1209
Csp6I GTAC 5 cut(s) 349, 802, 899, 1093, 1266
CspAI ACCGGT 1 cut(s) 852
CviAII CATG 2 cut(s) 169, 847
CviQI GTAC 5 cut(s) 349, 802, 899, 1093, 1266
DdeI CTNAG 6 cut(s) 196, 706, 728, 785, 1160, 1262
DpnI GATC 5 cut(s) 366, 671, 1007, 1158, 1209
DpnII GATC 5 cut(s) 364, 669, 1005, 1156, 1207
EaeI YGGCCR 4 cut(s) 376, 615, 759, 858
EagI CGGCCG 2 cut(s) 376, 759
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 234
EclXI CGGCCG 2 cut(s) 376, 759
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 2 cut(s) 236, 796
Eco47I GGWCC 3 cut(s) 646, 724, 868
Eco52I CGGCCG 2 cut(s) 376, 759
Eco53kI GAGCTC 1 cut(s) 234
Eco88I CYCGRG 2 cut(s) 745, 911
EcoICRI GAGCTC 1 cut(s) 234
EcoRII CCWGG 3 cut(s) 720, 864, 875
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 2 cut(s) 236, 796
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 2 cut(s) 172, 850
FaiI YATR 9 cut(s) 64, 170, 452, 848, 1016, 1043, 1069, 1076, 1143
FaqI GGGAC 2 cut(s) 4, 964
FatI CATG 2 cut(s) 168, 846
FauI CCCGC 5 cut(s) 599, 915, 1172, 1244, 1266
Fnu4HI GCNGC 6 cut(s) 49, 52, 261, 337, 361, 481
FriOI GRGCYC 2 cut(s) 236, 796
Fsp4HI GCNGC 6 cut(s) 49, 52, 261, 337, 361, 481
FspBI CTAG 2 cut(s) 257, 509
GluI GCNGC 6 cut(s) 49, 52, 261, 337, 361, 481
HaeIII GGCC 6 cut(s) 285, 378, 438, 617, 761, 860
HgaI GACGC 3 cut(s) 538, 966, 1209
Hin1I GRCGYC 1 cut(s) 977
Hin1II CATG 2 cut(s) 172, 850
HphI GGTGA 7 cut(s) 190, 280, 459, 487, 520, 808, 1202
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 8 cut(s) 253, 326, 401, 412, 572, 770, 1161, 1217
Hpy188III TCNNGA 6 cut(s) 427, 634, 697, 778, 913, 1009
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 5 cut(s) 554, 937, 1135, 1225, 1228
HpyAV CCTTC 4 cut(s) 117, 514, 1028, 1099
HpyCH4III ACNGT 4 cut(s) 220, 229, 491, 646
HpyCH4IV ACGT 2 cut(s) 935, 1050
HpyCH4V TGCA 3 cut(s) 4, 480, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 6 cut(s) 196, 706, 728, 785, 1160, 1262
HpySE526I ACGT 2 cut(s) 935, 1050
Hsp92I GRCGYC 1 cut(s) 977
Hsp92II CATG 2 cut(s) 172, 850
Kzo9I GATC 5 cut(s) 364, 669, 1005, 1156, 1207
LguI GCTCTTC 1 cut(s) 241
LmnI GCTCC 2 cut(s) 59, 1217
Lsp1109I GCAGC 6 cut(s) 35, 38, 272, 323, 347, 492
LweI GCATC 3 cut(s) 315, 627, 771
MaeI CTAG 2 cut(s) 257, 509
MaeII ACGT 2 cut(s) 935, 1050
MaeIII GTNAC 2 cut(s) 526, 1037
MalI GATC 5 cut(s) 366, 671, 1007, 1158, 1209
MboI GATC 5 cut(s) 364, 669, 1005, 1156, 1207
MboII GAAGA 5 cut(s) 184, 228, 301, 376, 425
MflI RGATCY 3 cut(s) 669, 1005, 1156
MhlI GDGCHC 4 cut(s) 236, 796, 1083, 1152
MluCI AATT 6 cut(s) 474, 884, 940, 968, 1063, 1100
MlyI GAGTC 7 cut(s) 363, 390, 416, 534, 582, 700, 827
MmeI TCCRAC 3 cut(s) 304, 390, 568
MroXI GAANNNNTTC 1 cut(s) 1202
MseI TTAA 2 cut(s) 191, 393
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 360, 1261
MspR9I CCNGG 8 cut(s) 445, 722, 791, 820, 830, 866, 877, 1119
MvaI CCWGG 3 cut(s) 722, 866, 877
MvnI CGCG 1 cut(s) 897
MwoI GCNNNNNNNGC 1 cut(s) 57
NciI CCSGG 5 cut(s) 445, 791, 820, 830, 1119
NdeII GATC 5 cut(s) 364, 669, 1005, 1156, 1207
NlaIII CATG 2 cut(s) 172, 850
NlaIV GGNNCC 4 cut(s) 809, 881, 1199, 1256
NmeAIII GCCGAG 1 cut(s) 404
NmuCI GTSAC 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 3 cut(s) 416, 510, 1056
PdmI GAANNNNTTC 1 cut(s) 1202
PfeI GAWTC 6 cut(s) 293, 538, 610, 682, 1114, 1186
PfoI TCCNGGA 2 cut(s) 828, 875
PinAI ACCGGT 1 cut(s) 852
PkrI GCNGC 6 cut(s) 50, 53, 262, 338, 362, 482
PleI GAGTC 7 cut(s) 362, 389, 415, 533, 581, 699, 827
PpsI GAGTC 7 cut(s) 362, 389, 415, 533, 581, 699, 827
PshBI ATTAAT 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 236
Psp6I CCWGG 3 cut(s) 720, 864, 875
PspGI CCWGG 3 cut(s) 720, 864, 875
PspN4I GGNNCC 4 cut(s) 809, 881, 1199, 1256
PspPI GGNCC 3 cut(s) 646, 724, 868
PsuI RGATCY 3 cut(s) 669, 1005, 1156
PvuII CAGCTG 1 cut(s) 360
RsaI GTAC 5 cut(s) 350, 803, 900, 1094, 1267
RsaNI GTAC 5 cut(s) 349, 802, 899, 1093, 1266
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 191, 393
SatI GCNGC 6 cut(s) 49, 52, 261, 337, 361, 481
Sau3AI GATC 5 cut(s) 364, 669, 1005, 1156, 1207
Sau96I GGNCC 3 cut(s) 646, 724, 868
SchI GAGTC 7 cut(s) 363, 390, 416, 534, 582, 700, 827
ScrFI CCNGG 8 cut(s) 445, 722, 791, 820, 830, 866, 877, 1119
SduI GDGCHC 4 cut(s) 236, 796, 1083, 1152
SfaNI GCATC 3 cut(s) 315, 627, 771
SgrAI CRCCGGYG 1 cut(s) 530
SinI GGWCC 3 cut(s) 646, 724, 868
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 632, 776
SmoI CTYRAG 2 cut(s) 632, 776
Sse9I AATT 6 cut(s) 474, 884, 940, 968, 1063, 1100
SsiI CCGC 5 cut(s) 606, 922, 1179, 1251, 1259
SspMI CTAG 2 cut(s) 257, 509
SstI GAGCTC 1 cut(s) 236
StyD4I CCNGG 8 cut(s) 443, 720, 789, 818, 828, 864, 875, 1117
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 4 cut(s) 220, 229, 491, 646
TaiI ACGT 2 cut(s) 938, 1053
TaqI TCGA 7 cut(s) 387, 486, 579, 932, 1083, 1112, 1206
TasI AATT 6 cut(s) 474, 884, 940, 968, 1063, 1100
TfiI GAWTC 6 cut(s) 293, 538, 610, 682, 1114, 1186
Tru1I TTAA 2 cut(s) 191, 393
Tru9I TTAA 2 cut(s) 191, 393
TscAI CASTG 3 cut(s) 204, 223, 234
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 6 cut(s) 48, 51, 260, 336, 360, 480
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 3 cut(s) 185, 863, 1056
TspGWI ACGGA 2 cut(s) 366, 963
TspRI CASTG 3 cut(s) 204, 223, 234
VpaK11BI GGWCC 3 cut(s) 646, 724, 868
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 3 cut(s) 474, 940, 1063
XmnI GAANNNNTTC 1 cut(s) 1202
XspI CTAG 2 cut(s) 257, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.