Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012848

Physical Location & Seq

Genomic Coordinates Forward (+)

923343 .. 924755

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G009800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAAAATGAAAATGAGGTTGTTTTTAATCTCAGTGACAATATTTTGTGCCATTATCTCAAGCGTGAACTCTTGTTCACCAGCAGACTTGGCAGCTCTTAAAGCCATCAAAACCAGCCTCACCGATTCCCATTTGGGCCTCTTCAACTCCTGGGTAGGAACCGACTGCTGCGTAAACTGGTACGGCGTCAGCTGCGACCCCGAAACTAAGCGAGTCGTCGACATTAACCTCCGAGGCGAGTCGGAGGACCCGATACTCACCAAATCGGGTCAGTCCGGGTTCATGTCCGGCTCCATCTCGCCCGAAATTTGCAAACTCGACCGCCTCACCACCCTCATTGTCGCAGACTGGAAGGGAATCACCGGCGAGATCCCCAAATGCCTCACTTCACTCTCCAATCTCCGAGTCCTCGACCTTATCGGAAACAAGATTTCGGGCGATATTCCAGCCGATATCGGAAACCTCAAGATGCTCACCGTCCTCAATCTGGCCGACAACCAGATATCCGGCAAGATTCCGGCTAGCATAGTAAGCATGTCCGGGTTAATGCACCTGGACCTCAGCAACAACCAAATCTCGGGCGAAATGCCGGCCGATTTCGGGAAACTCAAGATGCTGAGCCGGGCTTTGCTGAACCGGAACCAGCTCACCGGGTCGGTCCCTGTTTCCATCGGCAACATGAACCGGCTAGCCGACTTGGACCTGTCCAGGAACCGGATCTCGGGTAGTGTACCGGACTGTCTCGGAAAAATGCAAGTTCTTTCGACGCTGAATTTGGACGGGAACTTAATTTCGGGTCAATTGCCTTCCACCCTTTTGAGCAATCGGGGTTTGGGCATCTTGAACTTGAGCCGAAACAGCATTGGAGGTAACATACCGGACGTTTTCCACGGAAATTCGTATTTCATGGCGCTGGATTTGTCGTACAACAACTTGAAGGGCCCGATACCCGGTTCGCTATCGGCGGCCAAATATATCGGGCACTTGGATCTGAGCCACAACCACTTGTGTGGGACCATTCCGGTAGGCAACCCATTCGATCACCTCGAAGCGTCGTCGTTTGCCAACAATGATTGTCTCTGCGGGAATCCATTAAGGACTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

369

Amino Acids

39.35

Weight (kDa)

7.01

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12610
fragaria_vesca	FvH4_7g00720
malus_domestica	MD02G1315200.v1.1 MD07G1006700.v1.1
prunus_persica	Prupe.2G009800_v2.0.a1
pyrus_communis	pycom02g26420 pycom07g00540
rosa_chinensis	RchiOBHm_Chr1g0314931
rosa_laevigata	RLG00000030754
rosa_multiflora	Rmu_co8044478.1_g000001 Rmu_sc0005015.1_g000002 Rmu_sc0005168.1_g000009
rosa_roxburghii	Rroxscaffold_4G00331670
rosa_rugosa	Rorug01G0003100
rosa_samantha	Rh1AG014000 Rh1BG005600 Rh1DG007600
rosa_wichuraiana	Rw1G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	3 cut(s)	322, 965, 1083
AclWI	GGATC	3 cut(s)	364, 725, 996
AcoI	YGGCCR	3 cut(s)	489, 591, 966
AcsI	RAATTY	3 cut(s)	306, 772, 895
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	3 cut(s)	182, 732, 926
AfiI	CCNNNNNNNGG	6 cut(s)	487, 577, 600, 714, 721, 950
AgsI	TTSAA	3 cut(s)	145, 844, 937
AjnI	CCWGG	3 cut(s)	149, 552, 707
AleI	CACNNNNGTG	1 cut(s)	1008
AluBI	AGCT	3 cut(s)	95, 192, 646
AluI	AGCT	3 cut(s)	95, 192, 646
Alw26I	GTCTC	2 cut(s)	746, 1082
AlwI	GGATC	3 cut(s)	364, 725, 996
Ama87I	CYCGRG	2 cut(s)	577, 721
AoxI	GGCC	5 cut(s)	136, 489, 591, 940, 966
ApaI	GGGCCC	1 cut(s)	944
ApeKI	GCWGC	3 cut(s)	92, 168, 192
ApoI	RAATTY	3 cut(s)	306, 772, 895
ArsI	GACNNNNNNTTYG	2 cut(s)	757, 789
AspLEI	GCGC	1 cut(s)	913
AspS9I	GGNCC	8 cut(s)	136, 247, 556, 658, 700, 940, 941, 1014
AsuC2I	CCSGG	5 cut(s)	277, 541, 623, 652, 951
AsuHPI	GGTGA	8 cut(s)	69, 112, 250, 319, 352, 466, 640, 1034
AsuNHI	GCTAGC	2 cut(s)	521, 688
AvaI	CYCGRG	2 cut(s)	577, 721
AvaII	GGWCC	5 cut(s)	247, 556, 658, 700, 1014
BaeGI	GKGCMC	2 cut(s)	944, 984
BanII	GRGCYC	1 cut(s)	944
BbvCI	CCTCAGC	1 cut(s)	560
BbvI	GCAGC	3 cut(s)	104, 155, 179
BccI	CCATC	3 cut(s)	113, 302, 677
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	1018, 1052
BciT130I	CCWGG	3 cut(s)	151, 554, 709
BcnI	CCSGG	5 cut(s)	277, 541, 623, 652, 951
BcoDI	GTCTC	2 cut(s)	746, 1082
BfaI	CTAG	2 cut(s)	522, 689
BfoI	RGCGCY	1 cut(s)	914
BisI	GCNGC	4 cut(s)	93, 169, 193, 966
BlpI	GCTNAGC	1 cut(s)	617
BlsI	GCNGC	4 cut(s)	94, 170, 194, 967
Bme1390I	CCNGG	8 cut(s)	151, 277, 541, 554, 623, 652, 709, 951
Bme18I	GGWCC	5 cut(s)	247, 556, 658, 700, 1014
BmeT110I	CYCGRG	2 cut(s)	577, 721
BmgT120I	GGNCC	8 cut(s)	136, 247, 556, 658, 700, 940, 941, 1014
BmiI	GGNNCC	8 cut(s)	160, 249, 292, 641, 660, 713, 942, 1015
BmrFI	CCNGG	8 cut(s)	151, 277, 541, 554, 623, 652, 709, 951
BmsI	GCATC	3 cut(s)	459, 603, 846
BmtI	GCTAGC	2 cut(s)	525, 692
Bpu10I	CCTNAGC	1 cut(s)	560
Bpu1102I	GCTNAGC	1 cut(s)	617
BpuEI	CTTGAG	4 cut(s)	43, 449, 593, 868
BpuMI	CCSGG	5 cut(s)	277, 541, 623, 652, 951
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	150, 232, 889
BsaWI	WCCGGW	5 cut(s)	636, 714, 733, 877, 1021
Bsc4I	CCNNNNNNNGG	6 cut(s)	487, 577, 600, 714, 721, 950
Bse118I	RCCGGY	3 cut(s)	362, 589, 684
Bse1I	ACTGG	2 cut(s)	182, 353
BseBI	CCWGG	3 cut(s)	151, 554, 709
BseDI	CCNNGG	3 cut(s)	150, 232, 889
BseLI	CCNNNNNNNGG	6 cut(s)	487, 577, 600, 714, 721, 950
BseMII	CTCAG	4 cut(s)	45, 574, 608, 983
BseNI	ACTGG	2 cut(s)	182, 353
BseSI	GKGCMC	2 cut(s)	944, 984
BseX3I	CGGCCG	1 cut(s)	591
BseXI	GCAGC	3 cut(s)	104, 155, 179
Bsh1285I	CGRYCG	2 cut(s)	322, 594
BshFI	GGCC	5 cut(s)	138, 491, 593, 942, 968
BsiEI	CGRYCG	2 cut(s)	322, 594
BsiHKCI	CYCGRG	2 cut(s)	577, 721
BslFI	GGGAC	2 cut(s)	644, 1027
BslI	CCNNNNNNNGG	6 cut(s)	487, 577, 600, 714, 721, 950
BsmAI	GTCTC	2 cut(s)	746, 1082
BsmFI	GGGAC	2 cut(s)	644, 1027
BsnI	GGCC	5 cut(s)	138, 491, 593, 942, 968
BsoBI	CYCGRG	2 cut(s)	577, 721
Bsp120I	GGGCCC	1 cut(s)	940
Bsp1286I	GDGCHC	2 cut(s)	944, 984
Bsp143I	GATC	4 cut(s)	369, 717, 988, 1039
Bsp1720I	GCTNAGC	1 cut(s)	617
BspACI	CCGC	3 cut(s)	322, 965, 1083
BspANI	GGCC	5 cut(s)	138, 491, 593, 942, 968
BspCNI	CTCAG	4 cut(s)	44, 573, 609, 984
BspLI	GGNNCC	8 cut(s)	160, 249, 292, 641, 660, 713, 942, 1015
BspOI	GCTAGC	2 cut(s)	525, 692
BspPI	GGATC	3 cut(s)	364, 725, 996
BsrFI	RCCGGY	3 cut(s)	362, 589, 684
BsrI	ACTGG	2 cut(s)	182, 353
BssAI	RCCGGY	3 cut(s)	362, 589, 684
BssECI	CCNNGG	3 cut(s)	150, 232, 889
BssMI	GATC	4 cut(s)	369, 717, 988, 1039
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	151, 554, 709
Bst4CI	ACNGT	2 cut(s)	478, 740
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	523, 591, 690
BstDEI	CTNAG	5 cut(s)	31, 207, 560, 617, 992
BstDSI	CCRYGG	1 cut(s)	889
BstH2I	RGCGCY	1 cut(s)	914
BstHHI	GCGC	1 cut(s)	913
BstKTI	GATC	4 cut(s)	372, 720, 991, 1042
BstMAI	GTCTC	2 cut(s)	746, 1082
BstMBI	GATC	4 cut(s)	369, 717, 988, 1039
BstMCI	CGRYCG	2 cut(s)	322, 594
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 101, 192, 531, 858
BstNI	CCWGG	3 cut(s)	151, 554, 709
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	8 cut(s)	149, 275, 539, 552, 621, 650, 707, 949
BstSLI	GKGCMC	2 cut(s)	944, 984
BstV1I	GCAGC	3 cut(s)	104, 155, 179
BstX2I	RGATCY	3 cut(s)	369, 717, 988
BstXI	CCANNNNNNTGG	1 cut(s)	1010
BstYI	RGATCY	3 cut(s)	369, 717, 988
BstZI	CGGCCG	1 cut(s)	591
BsuRI	GGCC	5 cut(s)	138, 491, 593, 942, 968
BtgI	CCRYGG	1 cut(s)	889
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	523, 591, 690
CfoI	GCGC	1 cut(s)	913
Cfr10I	RCCGGY	3 cut(s)	362, 589, 684
Cfr13I	GGNCC	8 cut(s)	136, 247, 556, 658, 700, 940, 941, 1014
CseI	GACGC	3 cut(s)	175, 775, 1041
Csp6I	GTAC	3 cut(s)	181, 731, 925
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	4 cut(s)	283, 535, 679, 907
CviQI	GTAC	3 cut(s)	181, 731, 925
DdeI	CTNAG	5 cut(s)	31, 207, 560, 617, 992
DpnI	GATC	4 cut(s)	371, 719, 990, 1041
DpnII	GATC	4 cut(s)	369, 717, 988, 1039
EaeI	YGGCCR	3 cut(s)	489, 591, 966
EagI	CGGCCG	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EclXI	CGGCCG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	944
Eco32I	GATATC	2 cut(s)	454, 504
Eco47I	GGWCC	5 cut(s)	247, 556, 658, 700, 1014
Eco52I	CGGCCG	1 cut(s)	591
Eco88I	CYCGRG	2 cut(s)	577, 721
EcoO109I	RGGNCCY	2 cut(s)	247, 940
EcoRII	CCWGG	3 cut(s)	149, 552, 707
EcoRV	GATATC	2 cut(s)	454, 504
EcoT38I	GRGCYC	1 cut(s)	944
FaeI	CATG	4 cut(s)	286, 538, 682, 910
FaiI	YATR	7 cut(s)	284, 527, 536, 680, 875, 908, 975
FaqI	GGGAC	2 cut(s)	644, 1027
FatI	CATG	4 cut(s)	282, 534, 678, 906
FauI	CCCGC	1 cut(s)	1076
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	4 cut(s)	93, 169, 193, 966
FriOI	GRGCYC	1 cut(s)	944
Fsp4HI	GCNGC	4 cut(s)	93, 169, 193, 966
FspBI	CTAG	2 cut(s)	522, 689
GlaI	GCGC	1 cut(s)	912
GluI	GCNGC	4 cut(s)	93, 169, 193, 966
HaeII	RGCGCY	1 cut(s)	914
HaeIII	GGCC	5 cut(s)	138, 491, 593, 942, 968
HgaI	GACGC	3 cut(s)	175, 775, 1041
HhaI	GCGC	1 cut(s)	913
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	4 cut(s)	286, 538, 682, 910
Hin6I	GCGC	1 cut(s)	911
HinP1I	GCGC	1 cut(s)	911
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	7 cut(s)	125, 213, 239, 357, 405, 514, 1087
HphI	GGTGA	8 cut(s)	69, 112, 250, 319, 352, 466, 640, 1034
Hpy166II	GTNNAC	5 cut(s)	67, 77, 175, 220, 731
Hpy188I	TCNGA	7 cut(s)	233, 244, 404, 422, 458, 746, 993
Hpy188III	TCNNGA	4 cut(s)	466, 601, 610, 841
Hpy8I	GTNNAC	5 cut(s)	67, 77, 175, 220, 731
Hpy99I	CGWCG	4 cut(s)	221, 769, 1057, 1060
HpyAV	CCTTC	3 cut(s)	346, 816, 931
HpyCH4III	ACNGT	2 cut(s)	478, 740
HpyCH4IV	ACGT	1 cut(s)	882
HpyCH4V	TGCA	3 cut(s)	312, 550, 754
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 101, 192, 531, 858
HpyF3I	CTNAG	5 cut(s)	31, 207, 560, 617, 992
HpySE526I	ACGT	1 cut(s)	882
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	286, 538, 682, 910
HspAI	GCGC	1 cut(s)	911
KroI	GCCGGC	1 cut(s)	589
KroNI	GCCGGC	1 cut(s)	591
Kzo9I	GATC	4 cut(s)	369, 717, 988, 1039
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	3 cut(s)	104, 155, 179
LweI	GCATC	3 cut(s)	459, 603, 846
MaeI	CTAG	2 cut(s)	522, 689
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	2 cut(s)	34, 869
MalI	GATC	4 cut(s)	371, 719, 990, 1041
MboI	GATC	4 cut(s)	369, 717, 988, 1039
MboII	GAAGA	1 cut(s)	133
MfeI	CAATTG	1 cut(s)	800
MflI	RGATCY	3 cut(s)	369, 717, 988
MhlI	GDGCHC	2 cut(s)	944, 984
MluCI	AATT	5 cut(s)	306, 772, 789, 800, 895
MlyI	GAGTC	3 cut(s)	222, 248, 414
MmeI	TCCRAC	1 cut(s)	222
MroNI	GCCGGC	1 cut(s)	589
MseI	TTAA	7 cut(s)	26, 99, 225, 545, 788, 1094, 1105
MslI	CAYNNNNRTG	1 cut(s)	1008
MspA1I	CMGCKG	1 cut(s)	192
MspR9I	CCNGG	8 cut(s)	151, 277, 541, 554, 623, 652, 709, 951
MunI	CAATTG	1 cut(s)	800
MvaI	CCWGG	3 cut(s)	151, 554, 709
MwoI	GCNNNNNNNGC	5 cut(s)	89, 101, 192, 531, 858
NaeI	GCCGGC	1 cut(s)	591
NciI	CCSGG	5 cut(s)	277, 541, 623, 652, 951
NdeII	GATC	4 cut(s)	369, 717, 988, 1039
NgoMIV	GCCGGC	1 cut(s)	589
NheI	GCTAGC	2 cut(s)	521, 688
NlaIII	CATG	4 cut(s)	286, 538, 682, 910
NlaIV	GGNNCC	8 cut(s)	160, 249, 292, 641, 660, 713, 942, 1015
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	538
OliI	CACNNNNGTG	1 cut(s)	1008
PcsI	WCGNNNNNNNCGW	2 cut(s)	248, 1044
PdiI	GCCGGC	1 cut(s)	591
PfeI	GAWTC	4 cut(s)	125, 357, 514, 1087
PfoI	TCCNGGA	1 cut(s)	707
PkrI	GCNGC	4 cut(s)	94, 170, 194, 967
PleI	GAGTC	3 cut(s)	221, 247, 413
PpsI	GAGTC	3 cut(s)	221, 247, 413
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	3 cut(s)	149, 552, 707
PspGI	CCWGG	3 cut(s)	149, 552, 707
PspN4I	GGNNCC	8 cut(s)	160, 249, 292, 641, 660, 713, 942, 1015
PspOMI	GGGCCC	1 cut(s)	940
PspPI	GGNCC	8 cut(s)	136, 247, 556, 658, 700, 940, 941, 1014
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	3 cut(s)	369, 717, 988
PvuII	CAGCTG	1 cut(s)	192
RsaI	GTAC	3 cut(s)	182, 732, 926
RsaNI	GTAC	3 cut(s)	181, 731, 925
RseI	CAYNNNNRTG	1 cut(s)	1008
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	7 cut(s)	26, 99, 225, 545, 788, 1094, 1105
SatI	GCNGC	4 cut(s)	93, 169, 193, 966
Sau3AI	GATC	4 cut(s)	369, 717, 988, 1039
Sau96I	GGNCC	8 cut(s)	136, 247, 556, 658, 700, 940, 941, 1014
SchI	GAGTC	3 cut(s)	222, 248, 414
ScrFI	CCNGG	8 cut(s)	151, 277, 541, 554, 623, 652, 709, 951
SduI	GDGCHC	2 cut(s)	944, 984
SfaNI	GCATC	3 cut(s)	459, 603, 846
SgrAI	CRCCGGYG	1 cut(s)	362
SinI	GGWCC	5 cut(s)	247, 556, 658, 700, 1014
SmiMI	CAYNNNNRTG	1 cut(s)	1008
SmlI	CTYRAG	4 cut(s)	58, 464, 608, 847
SmoI	CTYRAG	4 cut(s)	58, 464, 608, 847
Sse9I	AATT	5 cut(s)	306, 772, 789, 800, 895
SsiI	CCGC	3 cut(s)	322, 965, 1083
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	2 cut(s)	522, 689
StyD4I	CCNGG	8 cut(s)	149, 275, 539, 552, 621, 650, 707, 949
TaaI	ACNGT	2 cut(s)	478, 740
TaiI	ACGT	1 cut(s)	885
TaqI	TCGA	6 cut(s)	219, 318, 411, 764, 1038, 1047
TaqII	GACCGA	1 cut(s)	646
TasI	AATT	5 cut(s)	306, 772, 789, 800, 895
TauI	GCSGC	1 cut(s)	968
TfiI	GAWTC	4 cut(s)	125, 357, 514, 1087
Tru1I	TTAA	7 cut(s)	26, 99, 225, 545, 788, 1094, 1105
Tru9I	TTAA	7 cut(s)	26, 99, 225, 545, 788, 1094, 1105
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	3 cut(s)	92, 168, 192
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	5 cut(s)	17, 23, 271, 695, 895
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	5 cut(s)	247, 556, 658, 700, 1014
XapI	RAATTY	3 cut(s)	306, 772, 895
XceI	RCATGY	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	2 cut(s)	522, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.