Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Forward (+)

4012107 .. 4013583

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTCAGAGAACGGAGAAGGAAGAGACCGAGTTCAAAGTTCTCGAAACCTTGACGACAACAACAACGACGTTATGTACCAATAACTGCGGCGTTACAGCGAATCCTGCGACGAACAACATGTGTCAGAAATGTTTCAACGCATCTCTCGTCTCGGCGGCCGCAGGTGTTGTTGAATCAGGTTCGATCTTGAAGAGATCGGCTAGATCTGTCAATCTTCGTTCGTCACCAGCTAAAGTCGTGATTCGTCCAAGAGAGATCGATGCGGTGAAGAAGAGAGATCAACAGATCGTAAACCGATGTTCTGGTTGTCGGAAGAAAGTTGGGTTGACCGGATTCAGGTGCCGATGCGGTGAGCTTTTCTGCTCAGAGCACCGTTACTCCGATCGTCATGATTGTAGCTACGACTACAAAACCGCTGGTCGTGAGGCGATCGCTAGAGAAAATCCGGTGGTCAAGGCTGCGAAAATGGTCAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

160

Amino Acids

17.67

Weight (kDa)

9.46

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	25 - 47	2.8e-08	A20-like zinc finger
zf-AN1	PF01428	101 - 138	2e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	342
AciI	CCGC	6 cut(s)	90, 158, 162, 266, 351, 417
AcoI	YGGCCR	1 cut(s)	159
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	339
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	4 cut(s)	37, 139, 176, 193
AluBI	AGCT	3 cut(s)	233, 358, 402
AluI	AGCT	3 cut(s)	233, 358, 402
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	2 cut(s)	20, 157
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	461
AsiSI	GCGATCGC	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	134
AsuHPI	GGTGA	3 cut(s)	219, 280, 365
BanI	GGYRCC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	448
BcoDI	GTCTC	2 cut(s)	20, 157
BfaI	CTAG	2 cut(s)	204, 438
BfuAI	ACCTGC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	4 cut(s)	91, 159, 162, 462
BlsI	GCNGC	4 cut(s)	92, 160, 163, 463
BmiI	GGNNCC	1 cut(s)	344
BmsI	GCATC	3 cut(s)	152, 253, 338
Bsa29I	ATCGAT	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	20
BsaWI	WCCGGW	2 cut(s)	332, 448
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	20, 381
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	448
Bsh1285I	CGRYCG	3 cut(s)	162, 388, 435
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	342
BshVI	ATCGAT	1 cut(s)	261
BsiEI	CGRYCG	3 cut(s)	162, 388, 435
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	333, 449
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	20, 157
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	8 cut(s)	186, 197, 206, 258, 280, 288, 385, 432
BspACI	CCGC	6 cut(s)	90, 158, 162, 266, 351, 417
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	2 cut(s)	19, 380
BspDI	ATCGAT	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	344
BspMI	ACCTGC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	342
BspTNI	GGTCTC	1 cut(s)	20
BssMI	GATC	8 cut(s)	186, 197, 206, 258, 280, 288, 385, 432
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	3 cut(s)	18, 188, 269
BstDEI	CTNAG	2 cut(s)	6, 367
BstKTI	GATC	8 cut(s)	189, 200, 209, 261, 283, 291, 388, 435
BstMAI	GTCTC	2 cut(s)	20, 157
BstMBI	GATC	8 cut(s)	186, 197, 206, 258, 280, 288, 385, 432
BstMCI	CGRYCG	3 cut(s)	162, 388, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZI	CGGCCG	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	161
BsuTUI	ATCGAT	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	155
CciI	TCATGA	1 cut(s)	391
CciNI	GCGGCCGC	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	2 cut(s)	121, 392
CviJI	RGCY	7 cut(s)	5, 161, 203, 233, 358, 402, 461
CviKI_1	RGCY	7 cut(s)	5, 161, 203, 233, 358, 402, 461
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	2 cut(s)	6, 367
DpnI	GATC	8 cut(s)	188, 199, 208, 260, 282, 290, 387, 434
DpnII	GATC	8 cut(s)	186, 197, 206, 258, 280, 288, 385, 432
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
Eam1104I	CTCTTC	3 cut(s)	18, 188, 269
EarI	CTCTTC	3 cut(s)	18, 188, 269
EclXI	CGGCCG	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	20
Eco52I	CGGCCG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	2 cut(s)	124, 395
FaiI	YATR	3 cut(s)	76, 122, 393
FatI	CATG	2 cut(s)	120, 391
Fnu4HI	GCNGC	4 cut(s)	91, 159, 162, 462
Fsp4HI	GCNGC	4 cut(s)	91, 159, 162, 462
FspBI	CTAG	2 cut(s)	204, 438
GluI	GCNGC	4 cut(s)	91, 159, 162, 462
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	2 cut(s)	333, 449
Hin1II	CATG	2 cut(s)	124, 395
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	4 cut(s)	103, 176, 244, 336
HpaII	CCGG	2 cut(s)	333, 449
HphI	GGTGA	3 cut(s)	219, 280, 365
Hpy166II	GTNNAC	2 cut(s)	295, 330
Hpy188I	TCNGA	5 cut(s)	9, 129, 315, 370, 385
Hpy188III	TCNNGA	5 cut(s)	44, 190, 241, 392, 425
Hpy8I	GTNNAC	2 cut(s)	295, 330
Hpy99I	CGWCG	2 cut(s)	73, 115
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	6, 367
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	124, 395
Kzo9I	GATC	8 cut(s)	186, 197, 206, 258, 280, 288, 385, 432
LpnPI	CCDG	9 cut(s)	120, 150, 165, 243, 291, 325, 346, 405, 462
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	3 cut(s)	152, 253, 338
MaeI	CTAG	2 cut(s)	204, 438
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	3 cut(s)	94, 225, 377
MalI	GATC	8 cut(s)	188, 199, 208, 260, 282, 290, 387, 434
MboI	GATC	8 cut(s)	186, 197, 206, 258, 280, 288, 385, 432
MboII	GAAGA	6 cut(s)	35, 205, 209, 283, 286, 328
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	1 cut(s)	481
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	333, 449
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	8 cut(s)	186, 197, 206, 258, 280, 288, 385, 432
NlaIII	CATG	2 cut(s)	124, 395
NlaIV	GGNNCC	1 cut(s)	344
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	225
NotI	GCGGCCGC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	124
PagI	TCATGA	1 cut(s)	391
PaqCI	CACCTGC	1 cut(s)	155
PciI	ACATGT	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	4 cut(s)	103, 176, 244, 336
PkrI	GCNGC	4 cut(s)	92, 160, 163, 463
Ple19I	CGATCG	2 cut(s)	388, 435
PscI	ACATGT	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	206
PvuI	CGATCG	2 cut(s)	388, 435
RgaI	GCGATCGC	1 cut(s)	435
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	481
SatI	GCNGC	4 cut(s)	91, 159, 162, 462
Sau3AI	GATC	8 cut(s)	186, 197, 206, 258, 280, 288, 385, 432
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	8 cut(s)	53, 74, 169, 184, 235, 344, 360, 404
SfaAI	GCGATCGC	1 cut(s)	435
SfaNI	GCATC	3 cut(s)	152, 253, 338
SgfI	GCGATCGC	1 cut(s)	435
SsiI	CCGC	6 cut(s)	90, 158, 162, 266, 351, 417
SspMI	CTAG	2 cut(s)	204, 438
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	45, 185, 261
TaqII	GACCGA	1 cut(s)	44
TauI	GCSGC	3 cut(s)	93, 161, 164
TfiI	GAWTC	4 cut(s)	103, 176, 244, 336
Tru1I	TTAA	1 cut(s)	481
Tru9I	TTAA	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	29
XceI	RCATGY	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	2 cut(s)	204, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.