Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Forward (+)

65613512 .. 65614021

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00331630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTCAGAGGACGGAGAAGGAAGAGACGGAGTTCAAGGTCCCCGACACCTTAACGCACTGCGTCAACAACTGCGGCGTCACAGGCAATCCCGCCACCAACAACATGTGCCAGAAGTGCTTCAACGCCACCACCGCCGCATCCACGGCCGCCACCACCGCAACAACATCCTCAACAACGACCGCCGTTTTCAAGTTTTCCGGCGAGAAAGTCCCGAGATCCAGCTCCTTTCGCTTCGACGGTCCCTCCGAAACCATTCGCAAAGCGGCCACCTCGGTGGAGAGCACGAGATCGGAGGAGTCGTCCATGAGGCGCGTGGTCAACCGGTGCTCCGGATGCCGGAGAAAGGTCGGGTTGACCGGATTCCGGTGCCGGTGCGGGGAGCTGTTCTGCGCAGAGCACCGGTACTCGGATCGACACGTGTGTAGCTACGACTACAAGGCCGCGGGTCGAGAGGCTATAGCCAGAGAAAACCCCGTGGTCAAAGCAGCCAAGATCGTCAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

169

Amino Acids

18.53

Weight (kDa)

9.32

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	21 - 42	1.1e-08	A20-like zinc finger
zf-AN1	PF01428	110 - 147	2.3e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	369
AccII	CGCG	2 cut(s)	315, 446
AccIII	TCCGGA	1 cut(s)	332
AclWI	GGATC	2 cut(s)	213, 420
AcoI	YGGCCR	2 cut(s)	147, 267
AcvI	CACGTG	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	5 cut(s)	339, 346, 366, 379, 409
AflIII	ACRYGT	3 cut(s)	105, 418, 420
AgeI	ACCGGT	2 cut(s)	324, 402
AgsI	TTSAA	3 cut(s)	37, 124, 193
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	3 cut(s)	225, 385, 429
AluI	AGCT	3 cut(s)	225, 385, 429
Alw21I	GWGCWC	3 cut(s)	287, 332, 402
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	213, 420
Ama87I	CYCGRG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	332
AoxI	GGCC	3 cut(s)	147, 267, 441
ApeKI	GCWGC	1 cut(s)	488
AsiGI	ACCGGT	2 cut(s)	324, 402
Asp700I	GAANNNNTTC	2 cut(s)	119, 255
AspLEI	GCGC	2 cut(s)	315, 395
AspS9I	GGNCC	2 cut(s)	40, 242
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	2 cut(s)	40, 242
BanI	GGYRCC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	286
BbrPI	CACGTG	1 cut(s)	421
Bbv12I	GWGCWC	3 cut(s)	287, 332, 402
BbvI	GCAGC	1 cut(s)	500
BceAI	ACGGC	2 cut(s)	162, 170
BcoDI	GTCTC	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	6 cut(s)	76, 138, 150, 267, 444, 489
BlsI	GCNGC	6 cut(s)	77, 139, 151, 268, 445, 490
Bme18I	GGWCC	2 cut(s)	40, 242
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	40, 242
BmiI	GGNNCC	3 cut(s)	42, 244, 371
BmsI	GCATC	2 cut(s)	149, 326
BsaAI	YACGTR	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	4 cut(s)	144, 273, 444, 477
BsaWI	WCCGGW	5 cut(s)	324, 332, 359, 366, 402
BsaXI	ACNNNNNCTCC	6 cut(s)	230, 260, 287, 314, 317, 344
Bsc4I	CCNNNNNNNGG	5 cut(s)	339, 346, 366, 379, 409
Bse118I	RCCGGY	3 cut(s)	324, 372, 402
BseAI	TCCGGA	1 cut(s)	332
BseDI	CCNNGG	4 cut(s)	144, 273, 444, 477
BseGI	GGATG	3 cut(s)	140, 167, 341
BseLI	CCNNNNNNNGG	5 cut(s)	339, 346, 366, 379, 409
BseMII	CTCAG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	311
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	500
Bsh1236I	CGCG	2 cut(s)	315, 446
Bsh1285I	CGRYCG	2 cut(s)	150, 183
BshFI	GGCC	3 cut(s)	149, 269, 443
BshNI	GGYRCC	1 cut(s)	369
BshTI	ACCGGT	2 cut(s)	324, 402
BsiEI	CGRYCG	2 cut(s)	150, 183
BsiHKAI	GWGCWC	3 cut(s)	287, 332, 402
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	8 cut(s)	201, 325, 333, 340, 360, 367, 373, 403
BslFI	GGGAC	3 cut(s)	26, 197, 228
BslI	CCNNNNNNNGG	5 cut(s)	339, 346, 366, 379, 409
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	3 cut(s)	26, 197, 228
BsnI	GGCC	3 cut(s)	149, 269, 443
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	3 cut(s)	287, 332, 402
Bsp13I	TCCGGA	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	218, 290, 412, 495
BspANI	GGCC	3 cut(s)	149, 269, 443
BspCNI	CTCAG	1 cut(s)	19
BspEI	TCCGGA	1 cut(s)	332
BspFNI	CGCG	2 cut(s)	315, 446
BspLI	GGNNCC	3 cut(s)	42, 244, 371
BspPI	GGATC	2 cut(s)	213, 420
BspT107I	GGYRCC	1 cut(s)	369
BsrFI	RCCGGY	3 cut(s)	324, 372, 402
BssAI	RCCGGY	3 cut(s)	324, 372, 402
BssECI	CCNNGG	4 cut(s)	144, 273, 444, 477
BssMI	GATC	4 cut(s)	218, 290, 412, 495
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	3 cut(s)	144, 444, 477
BstF5I	GGATG	3 cut(s)	140, 167, 341
BstFNI	CGCG	2 cut(s)	315, 446
BstHHI	GCGC	2 cut(s)	315, 395
BstKTI	GATC	4 cut(s)	221, 293, 415, 498
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	4 cut(s)	218, 290, 412, 495
BstMCI	CGRYCG	2 cut(s)	150, 183
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 117, 134, 146, 158, 231, 336
BstNSI	RCATGY	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	2 cut(s)	315, 446
BstV1I	GCAGC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	218
BstZI	CGGCCG	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	149, 269, 443
BtgI	CCRYGG	3 cut(s)	144, 444, 477
BtsCI	GGATG	3 cut(s)	140, 167, 341
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
CfoI	GCGC	2 cut(s)	315, 395
Cfr10I	RCCGGY	3 cut(s)	324, 372, 402
Cfr13I	GGNCC	2 cut(s)	40, 242
Cfr42I	CCGCGG	1 cut(s)	447
CseI	GACGC	2 cut(s)	52, 67
Csp6I	GTAC	1 cut(s)	406
CspAI	ACCGGT	2 cut(s)	324, 402
CviAII	CATG	2 cut(s)	106, 307
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	4 cut(s)	220, 292, 414, 497
DpnII	GATC	4 cut(s)	218, 290, 412, 495
EaeI	YGGCCR	2 cut(s)	147, 267
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	147
Eco47I	GGWCC	2 cut(s)	40, 242
Eco52I	CGGCCG	1 cut(s)	147
Eco72I	CACGTG	1 cut(s)	421
Eco88I	CYCGRG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	109, 310
FaiI	YATR	3 cut(s)	107, 308, 461
FaqI	GGGAC	3 cut(s)	26, 197, 228
FatI	CATG	2 cut(s)	105, 306
FauI	CCCGC	3 cut(s)	100, 371, 439
Fnu4HI	GCNGC	6 cut(s)	76, 138, 150, 267, 444, 489
FokI	GGATG	3 cut(s)	127, 154, 348
Fsp4HI	GCNGC	6 cut(s)	76, 138, 150, 267, 444, 489
FspI	TGCGCA	1 cut(s)	394
GlaI	GCGC	2 cut(s)	314, 394
GluI	GCNGC	6 cut(s)	76, 138, 150, 267, 444, 489
HaeIII	GGCC	3 cut(s)	149, 269, 443
HapII	CCGG	8 cut(s)	201, 325, 333, 340, 360, 367, 373, 403
HgaI	GACGC	2 cut(s)	52, 67
HhaI	GCGC	2 cut(s)	315, 395
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	109, 310
Hin6I	GCGC	2 cut(s)	313, 393
HinP1I	GCGC	2 cut(s)	313, 393
HincII	GTYRAC	3 cut(s)	67, 322, 357
HindII	GTYRAC	3 cut(s)	67, 322, 357
HinfI	GANTC	2 cut(s)	299, 363
HpaII	CCGG	8 cut(s)	201, 325, 333, 340, 360, 367, 373, 403
Hpy166II	GTNNAC	3 cut(s)	67, 322, 357
Hpy188I	TCNGA	4 cut(s)	9, 250, 295, 412
Hpy188III	TCNNGA	3 cut(s)	214, 333, 452
Hpy8I	GTNNAC	3 cut(s)	67, 322, 357
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 117, 134, 146, 158, 231, 336
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	109, 310
HspAI	GCGC	2 cut(s)	313, 393
Kpn2I	TCCGGA	1 cut(s)	332
KspI	CCGCGG	1 cut(s)	447
Kzo9I	GATC	4 cut(s)	218, 290, 412, 495
LmnI	GCTCC	3 cut(s)	230, 335, 382
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	2 cut(s)	149, 326
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	4 cut(s)	220, 292, 414, 497
MboI	GATC	4 cut(s)	218, 290, 412, 495
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	3 cut(s)	287, 332, 402
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	7 cut(s)	3, 181, 256, 283, 289, 303, 448
MroI	TCCGGA	1 cut(s)	332
MroXI	GAANNNNTTC	2 cut(s)	119, 255
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	8 cut(s)	201, 325, 333, 340, 360, 367, 373, 403
MvnI	CGCG	2 cut(s)	315, 446
MwoI	GCNNNNNNNGC	7 cut(s)	84, 117, 134, 146, 158, 231, 336
NdeII	GATC	4 cut(s)	218, 290, 412, 495
NlaIII	CATG	2 cut(s)	109, 310
NlaIV	GGNNCC	3 cut(s)	42, 244, 371
NmuCI	GTSAC	1 cut(s)	79
NsbI	TGCGCA	1 cut(s)	394
NspI	RCATGY	1 cut(s)	109
OliI	CACNNNNGTG	1 cut(s)	275
PciI	ACATGT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 299
PdmI	GAANNNNTTC	2 cut(s)	119, 255
PfeI	GAWTC	1 cut(s)	363
PinAI	ACCGGT	2 cut(s)	324, 402
PkrI	GCNGC	6 cut(s)	77, 139, 151, 268, 445, 490
PleI	GAGTC	1 cut(s)	307
PmaCI	CACGTG	1 cut(s)	421
PmlI	CACGTG	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	307
Ppu21I	YACGTR	1 cut(s)	421
PpuMI	RGGWCCY	1 cut(s)	40
PscI	ACATGT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	42, 244, 371
PspPI	GGNCC	2 cut(s)	40, 242
PspPPI	RGGWCCY	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	275
SacII	CCGCGG	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	6 cut(s)	76, 138, 150, 267, 444, 489
Sau3AI	GATC	4 cut(s)	218, 290, 412, 495
Sau96I	GGNCC	2 cut(s)	40, 242
SchI	GAGTC	1 cut(s)	308
SduI	GDGCHC	3 cut(s)	287, 332, 402
SetI	ASST	8 cut(s)	42, 53, 227, 275, 351, 387, 423, 431
SfaNI	GCATC	2 cut(s)	149, 326
SfcI	CTRYAG	1 cut(s)	459
Sfr303I	CCGCGG	1 cut(s)	447
SgrBI	CCGCGG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	40, 242
SmiMI	CAYNNNNRTG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	3 cut(s)	237, 415, 451
TauI	GCSGC	5 cut(s)	78, 140, 152, 269, 446
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	79
TspGWI	ACGGA	2 cut(s)	29, 44
TspRI	CASTG	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	40, 242
XceI	RCATGY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	2 cut(s)	119, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.