Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Forward (+)

36984651 .. 36985160

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1314600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAAAAAATGGCACAGAGAACGGAGAAGGAAGAGACGGAGTTCAAGGTCCCCGAAACGCTAACGCACTGCGTCAACAACTGCGGCGTCACCGGCAATCCCTCCACCAACAACATGTGCCAGAAGTGCTTCAACGCCGCATCGGCCGCCGCCGCCGCCGCCACTTCATCGTCGTCGTCAGCGGCGATTCTGAAGTTTTCAGCCGAGAAAAGTCCGAGATCTAGCTCATCTTTCAGCTTCGAGGCTGCTGCCGAGACCTGCCGTAAGACGACGGCATCAGAGATCGCGAGATCGGACGAAACGCCGAATCGGCGCGTGGTTAATCGGTGCTCCGGTTGTCGGAGGAAGGTCGGGTTGACCGGATTCAGGTGCCGGTGCGGCGAGCTTTTCTGCTCCGAACACCGGTACTCCGATCGCCACGTGTGCAGCTACGACTATAAGGCTGCCGGTCGCGAGGCCATCGCGAGAGAAAACCCCGTGGTCAAGGCCGCAAAGATCGTCCGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

170

Amino Acids

18.42

Weight (kDa)

9.31

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	24 - 45	1.1e-07	A20-like zinc finger
zf-AN1	PF01428	110 - 147	1.8e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	369
AccII	CGCG	4 cut(s)	287, 315, 453, 464
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	212
AcvI	CACGTG	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	3 cut(s)	339, 366, 402
AflIII	ACRYGT	2 cut(s)	114, 420
AgeI	ACCGGT	1 cut(s)	402
AgsI	TTSAA	2 cut(s)	46, 133
AluBI	AGCT	4 cut(s)	225, 237, 385, 429
AluI	AGCT	4 cut(s)	225, 237, 385, 429
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	29, 248
AoxI	GGCC	3 cut(s)	144, 456, 486
ApeKI	GCWGC	4 cut(s)	245, 248, 426, 443
AsiGI	ACCGGT	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	369
BbrPI	CACGTG	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	4 cut(s)	232, 235, 430, 438
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	2 cut(s)	246, 288
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	2 cut(s)	29, 248
BfaI	CTAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	266
BglI	GCCNNNNNGGC	3 cut(s)	143, 310, 378
BglII	AGATCT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	51, 371
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	149, 284
BpuMI	CCSGG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	477
BsaWI	WCCGGW	3 cut(s)	332, 359, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	339, 366, 402
Bse118I	RCCGGY	4 cut(s)	92, 372, 402, 446
BseDI	CCNNGG	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	339, 366, 402
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	232, 235, 430, 438
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	4 cut(s)	287, 315, 453, 464
Bsh1285I	CGRYCG	3 cut(s)	147, 415, 451
BshFI	GGCC	3 cut(s)	146, 458, 488
BshNI	GGYRCC	1 cut(s)	369
BshTI	ACCGGT	1 cut(s)	402
BsiEI	CGRYCG	3 cut(s)	147, 415, 451
BsiHKAI	GWGCWC	1 cut(s)	332
BsiSI	CCGG	7 cut(s)	93, 333, 360, 373, 403, 447, 502
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	339, 366, 402
BsmAI	GTCTC	2 cut(s)	29, 248
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	146, 458, 488
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	5 cut(s)	218, 282, 290, 412, 495
Bsp68I	TCGCGA	3 cut(s)	287, 453, 464
BspANI	GGCC	3 cut(s)	146, 458, 488
BspFNI	CGCG	4 cut(s)	287, 315, 453, 464
BspLI	GGNNCC	2 cut(s)	51, 371
BspMI	ACCTGC	1 cut(s)	266
BspT107I	GGYRCC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	248
BsrFI	RCCGGY	4 cut(s)	92, 372, 402, 446
BssAI	RCCGGY	4 cut(s)	92, 372, 402, 446
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	5 cut(s)	218, 282, 290, 412, 495
BssNI	GRCGYC	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	477
BstFNI	CGCG	4 cut(s)	287, 315, 453, 464
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	5 cut(s)	221, 285, 293, 415, 498
BstMAI	GTCTC	2 cut(s)	29, 248
BstMBI	GATC	5 cut(s)	218, 282, 290, 412, 495
BstMCI	CGRYCG	3 cut(s)	147, 415, 451
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	501
BstUI	CGCG	4 cut(s)	287, 315, 453, 464
BstV1I	GCAGC	4 cut(s)	232, 235, 430, 438
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	146, 458, 488
BtgI	CCRYGG	1 cut(s)	477
BtgZI	GCGATG	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
BtuMI	TCGCGA	3 cut(s)	287, 453, 464
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	383
CfoI	GCGC	1 cut(s)	315
Cfr10I	RCCGGY	4 cut(s)	92, 372, 402, 446
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	2 cut(s)	61, 76
Csp6I	GTAC	1 cut(s)	406
CspAI	ACCGGT	1 cut(s)	402
CviAII	CATG	1 cut(s)	115
CviQI	GTAC	1 cut(s)	406
DpnI	GATC	5 cut(s)	220, 284, 292, 414, 497
DpnII	GATC	5 cut(s)	218, 282, 290, 412, 495
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	49
Eco52I	CGGCCG	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	212
Eco72I	CACGTG	1 cut(s)	421
EcoO109I	RGGNCCY	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	116, 438
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	114
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	146, 458, 488
HapII	CCGG	7 cut(s)	93, 333, 360, 373, 403, 447, 502
HgaI	GACGC	2 cut(s)	61, 76
HhaI	GCGC	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	2 cut(s)	76, 357
HindII	GTYRAC	2 cut(s)	76, 357
HinfI	GANTC	3 cut(s)	187, 307, 363
HpaII	CCGG	7 cut(s)	93, 333, 360, 373, 403, 447, 502
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	76, 357
Hpy188I	TCNGA	7 cut(s)	192, 216, 280, 295, 342, 397, 412
Hpy188III	TCNNGA	3 cut(s)	286, 452, 463
Hpy8I	GTNNAC	2 cut(s)	76, 357
Hpy99I	CGWCG	3 cut(s)	175, 178, 274
HpyAV	CCTTC	2 cut(s)	22, 340
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	1 cut(s)	426
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	218, 282, 290, 412, 495
LmnI	GCTCC	2 cut(s)	335, 398
LpnPI	CCDG	9 cut(s)	106, 134, 271, 346, 352, 373, 386, 416, 460
Lsp1109I	GCAGC	4 cut(s)	232, 235, 430, 438
LweI	GCATC	2 cut(s)	149, 284
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	5 cut(s)	220, 284, 292, 414, 497
MboI	GATC	5 cut(s)	218, 282, 290, 412, 495
MboII	GAAGA	1 cut(s)	44
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	4 cut(s)	112, 235, 336, 448
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	7 cut(s)	93, 333, 360, 373, 403, 447, 502
MspR9I	CCNGG	1 cut(s)	503
MvnI	CGCG	4 cut(s)	287, 315, 453, 464
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	5 cut(s)	218, 282, 290, 412, 495
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	51, 371
NmeAIII	GCCGAG	2 cut(s)	229, 277
NmuCI	GTSAC	1 cut(s)	88
NruI	TCGCGA	3 cut(s)	287, 453, 464
NspI	RCATGY	1 cut(s)	118
PciI	ACATGT	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	3 cut(s)	187, 307, 363
PinAI	ACCGGT	1 cut(s)	402
Ple19I	CGATCG	1 cut(s)	415
PmaCI	CACGTG	1 cut(s)	421
PmlI	CACGTG	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	421
PpuMI	RGGWCCY	1 cut(s)	49
PscI	ACATGT	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	49
PspCI	CACGTG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	51, 371
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	218
PvuI	CGATCG	1 cut(s)	415
RruI	TCGCGA	3 cut(s)	287, 453, 464
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	5 cut(s)	218, 282, 290, 412, 495
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	9 cut(s)	51, 227, 239, 260, 351, 371, 387, 423, 431
SfaNI	GCATC	2 cut(s)	149, 284
SinI	GGWCC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	501
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	240
TfiI	GAWTC	3 cut(s)	187, 307, 363
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	4 cut(s)	245, 248, 426, 443
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	17, 156
TspGWI	ACGGA	2 cut(s)	38, 53
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.