Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Reverse (-)

811662 .. 814485

Gene Structure 2824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG006200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGGCCCATAATTTTCCATCTCGCCATTACCGACCTTTCTGAGACCCCTTCATATCCCCCATTTCTGTTGTCTCCCTCCCTCGCCCACCCAACCCCAAACCTTCTCTCGTCCTCTCTTTCTCTCTCTAAATTGTTGAACCACAGAATTTTCTTCTTCTCCACAAAACCTCAACCTCCGGTTTCTCTCTCTCTCCCTATCGGGAAATTAAGATTAATTCGAGAGAAAAGAGATCGAGCTCATCGGAATCCATATCTGAAACAAATGGCTCAGAGGACGGAGAAGGAAGAGACGGAGTTCAAGGTCCCCGACACCCTAACGCACTGCGTCAACAACTGCGGCGTCACAGGCAATCCCGCCACCAACAACATGTGCCAGAAGTGCTTCAACGCCACCACCGCCGCGTCCACGGCCGCCACCACCGCAACGACCGCCGTTTTCAAGTTTTCCGGCGAGAAAGTCCCGAGATCCAGCTCCTTTCGCTTCGACGGTCCCTCCGAAACCATCCGTAAAGCGGCCACGTCGGTGGAGAGCACGAGATCGGAGGAGTCGTCCATGAGGCGCGTGGTCAACCGGTGCTCCGGATGCCGGAGAAAGGTCGGGTTGACCGGATTCCGGTGCCGGTGCGGGGAGCTGTTCTGCGCTGAGCACCGGTACTCGGATCGGCACGTGTGTAGCTACGACTACAAGGCCGCGGGTCGAGAGGCTATAGCCAGAGAAAACCCTGTGGTCAAAGCAGCCAAGATCGTCAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

252

Amino Acids

28.09

Weight (kDa)

9.83

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	109 - 130	2e-08	A20-like zinc finger
zf-AN1	PF01428	193 - 230	4.4e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	618
AccII	CGCG	3 cut(s)	404, 564, 695
AccIII	TCCGGA	1 cut(s)	581
AclWI	GGATC	2 cut(s)	462, 669
AcoI	YGGCCR	2 cut(s)	411, 516
AcsI	RAATTY	1 cut(s)	147
AcvI	CACGTG	1 cut(s)	670
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	6 cut(s)	514, 588, 595, 615, 628, 658
AflIII	ACRYGT	2 cut(s)	369, 669
AgeI	ACCGGT	2 cut(s)	573, 651
AgsI	TTSAA	4 cut(s)	139, 301, 388, 442
AjiI	CACGTC	1 cut(s)	522
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	4 cut(s)	239, 474, 634, 678
AluI	AGCT	4 cut(s)	239, 474, 634, 678
Alw21I	GWGCWC	4 cut(s)	241, 536, 581, 651
Alw26I	GTCTC	3 cut(s)	38, 78, 284
AlwI	GGATC	2 cut(s)	462, 669
Ama87I	CYCGRG	1 cut(s)	463
Aor13HI	TCCGGA	1 cut(s)	581
AoxI	GGCC	4 cut(s)	5, 411, 516, 690
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	1 cut(s)	147
AseI	ATTAAT	1 cut(s)	215
AsiGI	ACCGGT	2 cut(s)	573, 651
Asp700I	GAANNNNTTC	1 cut(s)	383
AspLEI	GCGC	2 cut(s)	564, 644
AspS9I	GGNCC	3 cut(s)	6, 304, 491
AvaI	CYCGRG	1 cut(s)	463
AvaII	GGWCC	2 cut(s)	304, 491
BanI	GGYRCC	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	241
BauI	CACGAG	1 cut(s)	535
BbrPI	CACGTG	1 cut(s)	670
Bbv12I	GWGCWC	4 cut(s)	241, 536, 581, 651
BbvI	GCAGC	1 cut(s)	749
BccI	CCATC	2 cut(s)	27, 512
BceAI	ACGGC	2 cut(s)	419, 426
BcoDI	GTCTC	3 cut(s)	38, 78, 284
BfmI	CTRYAG	1 cut(s)	708
BisI	GCNGC	6 cut(s)	340, 402, 414, 516, 693, 738
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	6 cut(s)	341, 403, 415, 517, 694, 739
Bme18I	GGWCC	2 cut(s)	304, 491
BmeT110I	CYCGRG	1 cut(s)	463
BmgBI	CACGTC	1 cut(s)	522
BmgT120I	GGNCC	3 cut(s)	6, 304, 491
BmiI	GGNNCC	3 cut(s)	306, 493, 620
BmsI	GCATC	1 cut(s)	575
Bpu1102I	GCTNAGC	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	670
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	408, 693
BsaWI	WCCGGW	6 cut(s)	178, 573, 581, 608, 615, 651
BsaXI	ACNNNNNCTCC	6 cut(s)	479, 509, 536, 563, 566, 593
Bsc4I	CCNNNNNNNGG	6 cut(s)	514, 588, 595, 615, 628, 658
Bse118I	RCCGGY	3 cut(s)	573, 621, 651
BseAI	TCCGGA	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	408, 693
BseGI	GGATG	2 cut(s)	504, 590
BseLI	CCNNNNNNNGG	6 cut(s)	514, 588, 595, 615, 628, 658
BseMII	CTCAG	3 cut(s)	33, 284, 636
BseRI	GAGGAG	1 cut(s)	560
BseX3I	CGGCCG	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	749
Bsh1236I	CGCG	3 cut(s)	404, 564, 695
Bsh1285I	CGRYCG	2 cut(s)	414, 432
BshFI	GGCC	4 cut(s)	7, 413, 518, 692
BshNI	GGYRCC	1 cut(s)	618
BshTI	ACCGGT	2 cut(s)	573, 651
BsiEI	CGRYCG	2 cut(s)	414, 432
BsiHKAI	GWGCWC	4 cut(s)	241, 536, 581, 651
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	9 cut(s)	179, 450, 574, 582, 589, 609, 616, 622, 652
BslFI	GGGAC	3 cut(s)	290, 446, 477
BslI	CCNNNNNNNGG	6 cut(s)	514, 588, 595, 615, 628, 658
BsmAI	GTCTC	3 cut(s)	38, 78, 284
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	3 cut(s)	290, 446, 477
BsnI	GGCC	4 cut(s)	7, 413, 518, 692
Bso31I	GGTCTC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	4 cut(s)	241, 536, 581, 651
Bsp13I	TCCGGA	1 cut(s)	581
Bsp143I	GATC	5 cut(s)	232, 467, 539, 661, 744
Bsp1720I	GCTNAGC	1 cut(s)	645
BspANI	GGCC	4 cut(s)	7, 413, 518, 692
BspCNI	CTCAG	3 cut(s)	34, 283, 637
BspEI	TCCGGA	1 cut(s)	581
BspFNI	CGCG	3 cut(s)	404, 564, 695
BspLI	GGNNCC	3 cut(s)	306, 493, 620
BspPI	GGATC	2 cut(s)	462, 669
BspT107I	GGYRCC	1 cut(s)	618
BspTNI	GGTCTC	1 cut(s)	38
BsrFI	RCCGGY	3 cut(s)	573, 621, 651
BssAI	RCCGGY	3 cut(s)	573, 621, 651
BssECI	CCNNGG	2 cut(s)	408, 693
BssMI	GATC	5 cut(s)	232, 467, 539, 661, 744
BssNI	GRCGYC	1 cut(s)	342
BssSI	CACGAG	1 cut(s)	535
Bst2BI	CACGAG	1 cut(s)	535
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	670
BstDEI	CTNAG	3 cut(s)	42, 270, 645
BstDSI	CCRYGG	2 cut(s)	408, 693
BstF5I	GGATG	2 cut(s)	504, 590
BstFNI	CGCG	3 cut(s)	404, 564, 695
BstHHI	GCGC	2 cut(s)	564, 644
BstKTI	GATC	5 cut(s)	235, 470, 542, 664, 747
BstMAI	GTCTC	3 cut(s)	38, 78, 284
BstMBI	GATC	5 cut(s)	232, 467, 539, 661, 744
BstMCI	CGRYCG	2 cut(s)	414, 432
BstMWI	GCNNNNNNNGC	8 cut(s)	348, 381, 398, 410, 422, 431, 480, 585
BstNSI	RCATGY	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	708
BstUI	CGCG	3 cut(s)	404, 564, 695
BstV1I	GCAGC	1 cut(s)	749
BstX2I	RGATCY	1 cut(s)	467
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	467
BstZI	CGGCCG	1 cut(s)	411
BsuRI	GGCC	4 cut(s)	7, 413, 518, 692
BtgI	CCRYGG	2 cut(s)	408, 693
BtrI	CACGTC	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	504, 590
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
CfoI	GCGC	2 cut(s)	564, 644
Cfr10I	RCCGGY	3 cut(s)	573, 621, 651
Cfr13I	GGNCC	3 cut(s)	6, 304, 491
Cfr42I	CCGCGG	1 cut(s)	696
CseI	GACGC	3 cut(s)	316, 331, 393
Csp6I	GTAC	1 cut(s)	655
CspAI	ACCGGT	2 cut(s)	573, 651
CviAII	CATG	2 cut(s)	370, 556
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	3 cut(s)	42, 270, 645
DpnI	GATC	5 cut(s)	234, 469, 541, 663, 746
DpnII	GATC	5 cut(s)	232, 467, 539, 661, 744
EaeI	YGGCCR	2 cut(s)	411, 516
EagI	CGGCCG	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	239
EclXI	CGGCCG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	304, 491
Eco52I	CGGCCG	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	239
Eco72I	CACGTG	1 cut(s)	670
Eco88I	CYCGRG	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	2 cut(s)	373, 559
FaiI	YATR	6 cut(s)	11, 55, 253, 371, 557, 710
FaqI	GGGAC	3 cut(s)	290, 446, 477
FatI	CATG	2 cut(s)	369, 555
FauI	CCCGC	3 cut(s)	364, 620, 688
Fnu4HI	GCNGC	6 cut(s)	340, 402, 414, 516, 693, 738
FokI	GGATG	2 cut(s)	491, 597
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	6 cut(s)	340, 402, 414, 516, 693, 738
GlaI	GCGC	2 cut(s)	563, 643
GluI	GCNGC	6 cut(s)	340, 402, 414, 516, 693, 738
HaeIII	GGCC	4 cut(s)	7, 413, 518, 692
HapII	CCGG	9 cut(s)	179, 450, 574, 582, 589, 609, 616, 622, 652
HgaI	GACGC	3 cut(s)	316, 331, 393
HhaI	GCGC	2 cut(s)	564, 644
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	2 cut(s)	373, 559
Hin6I	GCGC	2 cut(s)	562, 642
HinP1I	GCGC	2 cut(s)	562, 642
HincII	GTYRAC	3 cut(s)	331, 571, 606
HindII	GTYRAC	3 cut(s)	331, 571, 606
HinfI	GANTC	3 cut(s)	247, 548, 612
HpaII	CCGG	9 cut(s)	179, 450, 574, 582, 589, 609, 616, 622, 652
Hpy166II	GTNNAC	4 cut(s)	331, 408, 571, 606
Hpy188I	TCNGA	7 cut(s)	43, 246, 258, 273, 499, 544, 661
Hpy188III	TCNNGA	5 cut(s)	202, 221, 463, 582, 701
Hpy8I	GTNNAC	4 cut(s)	331, 408, 571, 606
Hpy99I	CGWCG	2 cut(s)	491, 526
HpyAV	CCTTC	3 cut(s)	60, 113, 277
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	2 cut(s)	521, 669
HpyF10VI	GCNNNNNNNGC	8 cut(s)	348, 381, 398, 410, 422, 431, 480, 585
HpyF3I	CTNAG	3 cut(s)	42, 270, 645
HpySE526I	ACGT	2 cut(s)	521, 669
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	373, 559
HspAI	GCGC	2 cut(s)	562, 642
Kpn2I	TCCGGA	1 cut(s)	581
KspI	CCGCGG	1 cut(s)	696
Kzo9I	GATC	5 cut(s)	232, 467, 539, 661, 744
LmnI	GCTCC	3 cut(s)	479, 584, 631
Lsp1109I	GCAGC	1 cut(s)	749
LweI	GCATC	1 cut(s)	575
MaeII	ACGT	2 cut(s)	521, 669
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	5 cut(s)	234, 469, 541, 663, 746
MboI	GATC	5 cut(s)	232, 467, 539, 661, 744
MboII	GAAGA	3 cut(s)	145, 148, 299
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	4 cut(s)	241, 536, 581, 651
MluCI	AATT	5 cut(s)	12, 131, 147, 206, 216
MlyI	GAGTC	1 cut(s)	557
MroI	TCCGGA	1 cut(s)	581
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	2 cut(s)	209, 215
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	695
MspI	CCGG	9 cut(s)	179, 450, 574, 582, 589, 609, 616, 622, 652
MvnI	CGCG	3 cut(s)	404, 564, 695
MwoI	GCNNNNNNNGC	8 cut(s)	348, 381, 398, 410, 422, 431, 480, 585
NdeII	GATC	5 cut(s)	232, 467, 539, 661, 744
NlaIII	CATG	2 cut(s)	373, 559
NlaIV	GGNNCC	3 cut(s)	306, 493, 620
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	373
OliI	CACNNNNGTG	1 cut(s)	524
PciI	ACATGT	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	3 cut(s)	30, 495, 548
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	247, 612
PinAI	ACCGGT	2 cut(s)	573, 651
PkrI	GCNGC	6 cut(s)	341, 403, 415, 517, 694, 739
PleI	GAGTC	1 cut(s)	556
PmaCI	CACGTG	1 cut(s)	670
PmlI	CACGTG	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	556
Ppu21I	YACGTR	1 cut(s)	670
PpuMI	RGGWCCY	1 cut(s)	304
PscI	ACATGT	1 cut(s)	369
PshBI	ATTAAT	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	304
PspCI	CACGTG	1 cut(s)	670
PspN4I	GGNNCC	3 cut(s)	306, 493, 620
PspPI	GGNCC	3 cut(s)	6, 304, 491
PspPPI	RGGWCCY	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
RseI	CAYNNNNRTG	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	241
SacII	CCGCGG	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	209, 215
SatI	GCNGC	6 cut(s)	340, 402, 414, 516, 693, 738
Sau3AI	GATC	5 cut(s)	232, 467, 539, 661, 744
Sau96I	GGNCC	3 cut(s)	6, 304, 491
SchI	GAGTC	1 cut(s)	557
SduI	GDGCHC	4 cut(s)	241, 536, 581, 651
SfaNI	GCATC	1 cut(s)	575
SfcI	CTRYAG	1 cut(s)	708
Sfr303I	CCGCGG	1 cut(s)	696
SgrBI	CCGCGG	1 cut(s)	696
SinI	GGWCC	2 cut(s)	304, 491
SmiMI	CAYNNNNRTG	1 cut(s)	524
Sse9I	AATT	5 cut(s)	12, 131, 147, 206, 216
SstI	GAGCTC	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	2 cut(s)	524, 672
TaqI	TCGA	4 cut(s)	220, 235, 486, 700
TasI	AATT	5 cut(s)	12, 131, 147, 206, 216
TauI	GCSGC	5 cut(s)	342, 404, 416, 518, 695
TfiI	GAWTC	2 cut(s)	247, 612
Tru1I	TTAA	2 cut(s)	209, 215
Tru9I	TTAA	2 cut(s)	209, 215
TscAI	CASTG	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	737
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	3 cut(s)	293, 308, 497
TspRI	CASTG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	304, 491
VspI	ATTAAT	1 cut(s)	215
XapI	RAATTY	1 cut(s)	147
XceI	RCATGY	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.