Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Forward (+)

24188086 .. 24188589

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAAAAAATGGCACAGAGAGCGGAGAAGGAAGAGACGGAGTTCAAGGTCCCCGAAACACTAACGCACTGCGTCAACAACTGCGGCGTCACCGGCAATCCCTCCACCAACAACATGTGCCAGAAGTGCTTCAACGCCGCATCGGCCGCCGCCGCCGCCACTTCATCGTCGTCAGCGGCGATTCTGAAGTTTTCAGCCGAGAAAAGTCCGAGATCTAGCTCATCCTTCAGCTTCGAGGCTGCTGCCGAGACCTGCCGTAAGACGACGGCATCGGAGATCGCCAGATCGGACGAAACGCCGAATCGGCGCGTGGTTAATCGGTGCTCCGGTTGTCGGAGAAAGGTCGGGTTGACCGGATTCAGGTGCCGGTGCGGCGAGCTCTTCTGCTCTGAACACCGGTACTCCGATCGACACGTGTGCAGCTACGACTACAAGGCTGCCGGTCGCGAGGCCATCGCGAGAGAAAACCCCGTGGTCAAGGCCGCAAAGATCGTCCGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

168

Amino Acids

18.23

Weight (kDa)

9.31

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	24 - 45	1.1e-07	A20-like zinc finger
zf-AN1	PF01428	108 - 145	1.7e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	363
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	3 cut(s)	309, 447, 458
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	2 cut(s)	206, 211
AcvI	CACGTG	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	333, 360
AflIII	ACRYGT	3 cut(s)	114, 412, 414
AgeI	ACCGGT	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	46, 133
AluBI	AGCT	4 cut(s)	219, 231, 379, 423
AluI	AGCT	4 cut(s)	219, 231, 379, 423
Alw21I	GWGCWC	2 cut(s)	326, 381
Alw26I	GTCTC	2 cut(s)	29, 242
AoxI	GGCC	3 cut(s)	144, 450, 480
ApeKI	GCWGC	4 cut(s)	239, 242, 420, 437
AsiGI	ACCGGT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	381
BbrPI	CACGTG	1 cut(s)	415
Bbv12I	GWGCWC	2 cut(s)	326, 381
BbvI	GCAGC	4 cut(s)	226, 229, 424, 432
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	2 cut(s)	240, 282
BcgI	CGANNNNNNTGC	4 cut(s)	224, 258, 399, 433
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	2 cut(s)	29, 242
BfaI	CTAG	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	260
BglI	GCCNNNNNGGC	3 cut(s)	143, 304, 372
BglII	AGATCT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	51, 365
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	2 cut(s)	149, 278
BpuMI	CCSGG	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	415
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	3 cut(s)	326, 353, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 360
Bse118I	RCCGGY	4 cut(s)	92, 366, 396, 440
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	333, 360
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	226, 229, 424, 432
BsgI	GTGCAG	1 cut(s)	439
Bsh1236I	CGCG	3 cut(s)	309, 447, 458
Bsh1285I	CGRYCG	3 cut(s)	147, 409, 445
BshFI	GGCC	3 cut(s)	146, 452, 482
BshNI	GGYRCC	1 cut(s)	363
BshTI	ACCGGT	1 cut(s)	396
BsiEI	CGRYCG	3 cut(s)	147, 409, 445
BsiHKAI	GWGCWC	2 cut(s)	326, 381
BsiSI	CCGG	7 cut(s)	93, 327, 354, 367, 397, 441, 496
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	333, 360
BsmAI	GTCTC	2 cut(s)	29, 242
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	146, 452, 482
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	326, 381
Bsp143I	GATC	5 cut(s)	212, 276, 284, 406, 489
Bsp68I	TCGCGA	2 cut(s)	447, 458
BspANI	GGCC	3 cut(s)	146, 452, 482
BspFNI	CGCG	3 cut(s)	309, 447, 458
BspLI	GGNNCC	2 cut(s)	51, 365
BspMI	ACCTGC	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	23
BsrFI	RCCGGY	4 cut(s)	92, 366, 396, 440
BssAI	RCCGGY	4 cut(s)	92, 366, 396, 440
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	5 cut(s)	212, 276, 284, 406, 489
BssNI	GRCGYC	1 cut(s)	87
Bst6I	CTCTTC	2 cut(s)	27, 386
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	377
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	221
BstFNI	CGCG	3 cut(s)	309, 447, 458
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	5 cut(s)	215, 279, 287, 409, 492
BstMAI	GTCTC	2 cut(s)	29, 242
BstMBI	GATC	5 cut(s)	212, 276, 284, 406, 489
BstMCI	CGRYCG	3 cut(s)	147, 409, 445
BstMWI	GCNNNNNNNGC	9 cut(s)	20, 93, 126, 143, 146, 152, 155, 304, 372
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	495
BstUI	CGCG	3 cut(s)	309, 447, 458
BstV1I	GCAGC	4 cut(s)	226, 229, 424, 432
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	146, 452, 482
BtgI	CCRYGG	1 cut(s)	471
BtgZI	GCGATG	1 cut(s)	439
BtsCI	GGATG	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
BtuMI	TCGCGA	2 cut(s)	447, 458
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	377
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	4 cut(s)	92, 366, 396, 440
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	2 cut(s)	61, 76
Csp6I	GTAC	1 cut(s)	400
CspAI	ACCGGT	1 cut(s)	396
CviAII	CATG	1 cut(s)	115
CviQI	GTAC	1 cut(s)	400
DpnI	GATC	5 cut(s)	214, 278, 286, 408, 491
DpnII	GATC	5 cut(s)	212, 276, 284, 406, 489
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	27, 386
EarI	CTCTTC	2 cut(s)	27, 386
Ecl136II	GAGCTC	1 cut(s)	379
EclXI	CGGCCG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	49
Eco52I	CGGCCG	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	206, 211
Eco72I	CACGTG	1 cut(s)	415
EcoICRI	GAGCTC	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	1 cut(s)	118
FaiI	YATR	1 cut(s)	116
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	114
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	146, 452, 482
HapII	CCGG	7 cut(s)	93, 327, 354, 367, 397, 441, 496
HgaI	GACGC	2 cut(s)	61, 76
HhaI	GCGC	1 cut(s)	309
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	2 cut(s)	76, 351
HindII	GTYRAC	2 cut(s)	76, 351
HinfI	GANTC	3 cut(s)	181, 301, 357
HpaII	CCGG	7 cut(s)	93, 327, 354, 367, 397, 441, 496
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	76, 351
Hpy188I	TCNGA	7 cut(s)	186, 210, 274, 289, 336, 391, 406
Hpy188III	TCNNGA	2 cut(s)	446, 457
Hpy8I	GTNNAC	2 cut(s)	76, 351
Hpy99I	CGWCG	2 cut(s)	172, 268
HpyAV	CCTTC	2 cut(s)	22, 235
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	9 cut(s)	20, 93, 126, 143, 146, 152, 155, 304, 372
HpySE526I	ACGT	1 cut(s)	414
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	5 cut(s)	212, 276, 284, 406, 489
LguI	GCTCTTC	1 cut(s)	386
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	4 cut(s)	226, 229, 424, 432
LweI	GCATC	2 cut(s)	149, 278
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	5 cut(s)	214, 278, 286, 408, 491
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	5 cut(s)	212, 276, 284, 406, 489
MboII	GAAGA	2 cut(s)	44, 373
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	326, 381
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	3 cut(s)	112, 229, 442
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	7 cut(s)	93, 327, 354, 367, 397, 441, 496
MspR9I	CCNGG	1 cut(s)	497
MvnI	CGCG	3 cut(s)	309, 447, 458
MwoI	GCNNNNNNNGC	9 cut(s)	20, 93, 126, 143, 146, 152, 155, 304, 372
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	5 cut(s)	212, 276, 284, 406, 489
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	51, 365
NmeAIII	GCCGAG	2 cut(s)	223, 271
NmuCI	GTSAC	1 cut(s)	88
NruI	TCGCGA	2 cut(s)	447, 458
NspI	RCATGY	1 cut(s)	118
PciI	ACATGT	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	3 cut(s)	181, 301, 357
PinAI	ACCGGT	1 cut(s)	396
Ple19I	CGATCG	1 cut(s)	409
PmaCI	CACGTG	1 cut(s)	415
PmlI	CACGTG	1 cut(s)	415
Ppu21I	YACGTR	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	49
PscI	ACATGT	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	49
PspCI	CACGTG	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	51, 365
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	409
RruI	TCGCGA	2 cut(s)	447, 458
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SacI	GAGCTC	1 cut(s)	381
SapI	GCTCTTC	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	5 cut(s)	212, 276, 284, 406, 489
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	2 cut(s)	326, 381
SetI	ASST	9 cut(s)	51, 221, 233, 254, 345, 365, 381, 417, 425
SfaNI	GCATC	2 cut(s)	149, 278
SinI	GGWCC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	495
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	2 cut(s)	234, 409
TauI	GCSGC	9 cut(s)	87, 140, 149, 152, 155, 158, 179, 375, 485
TfiI	GAWTC	3 cut(s)	181, 301, 357
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	4 cut(s)	239, 242, 420, 437
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	17, 153
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.