Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Forward (+)

66893301 .. 66894376

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTCAGAGGACGGAGAAGGAAGAGACGGAGTTCAAGGTCCCCGACACCTTAACGCACTGCGTCAACAACTGCGGCGTCACAGGCAATCCCGCCACCAACAACATGTGCCAGAAGTGCTTCAACGCCACCACCGCCGCGTCCACGGCCGCCGCCACCGCAACAACATCCTCAACAACGGCCGCCGTTTTCAAGTTTTCCGGCGAGAAAGTCCCGAGATCCAGCTCCTTTCGCTTCGACGGTCCCTCCGAAACCATCCGTAAAGCGGCCACGTCGGTGGAGAGCACGAGATCGGAGGAGTCGTCCATGAGGCGCGTGGTCAACCGGTGCTCCGGATGCCGGAGAAAGGTCGGGTTGACCGGATTCCGGTGCCGGTGCGGGGAGCTGTTCTGCGCCGAGCACCGGTACTCGGATCGACACGTGTGTAGCTACGACTACAAGGCCGCGGGTCGAGAGGCCATAGCCAGAGAGAACCCCGTGGTCAAAGCAGCCAAGATCGTCAGGAGCAGGAGAGAAAGAGATGGCTTCGGCTTCGGCTTCGGCTTCGGCTTCGATATTGAAAGAAAATCAAAATCTCTCGAAGGGACAGGGTGTTTTCCGTCATTTAGCGATTTGCAACTGGTAAATCGGTTGGACTTTCGGTCCCACGGAATGGGACGTGCCTGCCAGGGTTTTTCAATTATTTTGTTTCTCGCGATACGACGAGACGATAAATTGATTTCTCGGATACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

245

Amino Acids

27.04

Weight (kDa)

9.58

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	21 - 42	1.9e-08	A20-like zinc finger
zf-AN1	PF01428	110 - 147	4.2e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	652
AccII	CGCG	4 cut(s)	140, 315, 446, 695
AccIII	TCCGGA	1 cut(s)	332
AclWI	GGATC	2 cut(s)	213, 420
AcoI	YGGCCR	3 cut(s)	147, 180, 267
AcvI	CACGTG	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	8 cut(s)	265, 339, 346, 366, 379, 402, 409, 652
AflIII	ACRYGT	3 cut(s)	105, 418, 420
AgeI	ACCGGT	2 cut(s)	324, 402
AgsI	TTSAA	5 cut(s)	37, 124, 193, 560, 678
AhdI	GACNNNNNGTC	1 cut(s)	640
AjiI	CACGTC	2 cut(s)	273, 659
AjnI	CCWGG	1 cut(s)	666
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	3 cut(s)	225, 385, 429
AluI	AGCT	3 cut(s)	225, 385, 429
Alw21I	GWGCWC	3 cut(s)	287, 332, 402
Alw26I	GTCTC	2 cut(s)	20, 699
AlwI	GGATC	2 cut(s)	213, 420
Ama87I	CYCGRG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	332
AoxI	GGCC	5 cut(s)	147, 180, 267, 441, 456
ApeKI	GCWGC	1 cut(s)	488
AsiGI	ACCGGT	2 cut(s)	324, 402
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	315, 395
AspS9I	GGNCC	3 cut(s)	40, 242, 642
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	3 cut(s)	40, 242, 642
BanI	GGYRCC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	286
BbrPI	CACGTG	1 cut(s)	421
Bbv12I	GWGCWC	3 cut(s)	287, 332, 402
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	2 cut(s)	263, 515
BceAI	ACGGC	3 cut(s)	162, 170, 195
BciT130I	CCWGG	1 cut(s)	668
BciVI	GTATCC	1 cut(s)	720
BcoDI	GTCTC	2 cut(s)	20, 699
BfuI	GTATCC	1 cut(s)	720
BisI	GCNGC	8 cut(s)	76, 138, 150, 153, 183, 267, 444, 489
BlsI	GCNGC	8 cut(s)	77, 139, 151, 154, 184, 268, 445, 490
Bme1390I	CCNGG	1 cut(s)	668
Bme18I	GGWCC	3 cut(s)	40, 242, 642
BmeRI	GACNNNNNGTC	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	214
BmgBI	CACGTC	2 cut(s)	273, 659
BmgT120I	GGNCC	3 cut(s)	40, 242, 642
BmiI	GGNNCC	4 cut(s)	42, 244, 371, 644
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	5 cut(s)	144, 444, 477, 646, 667
BsaWI	WCCGGW	5 cut(s)	324, 332, 359, 366, 402
BsaXI	ACNNNNNCTCC	6 cut(s)	230, 260, 287, 314, 317, 344
Bsc4I	CCNNNNNNNGG	8 cut(s)	265, 339, 346, 366, 379, 402, 409, 652
Bse118I	RCCGGY	3 cut(s)	324, 372, 402
Bse1I	ACTGG	1 cut(s)	624
BseAI	TCCGGA	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	5 cut(s)	144, 444, 477, 646, 667
BseGI	GGATG	3 cut(s)	167, 255, 341
BseLI	CCNNNNNNNGG	8 cut(s)	265, 339, 346, 366, 379, 402, 409, 652
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	1 cut(s)	311
BseX3I	CGGCCG	2 cut(s)	147, 180
BseXI	GCAGC	1 cut(s)	500
Bsh1236I	CGCG	4 cut(s)	140, 315, 446, 695
Bsh1285I	CGRYCG	2 cut(s)	150, 183
BshFI	GGCC	5 cut(s)	149, 182, 269, 443, 458
BshNI	GGYRCC	1 cut(s)	369
BshTI	ACCGGT	2 cut(s)	324, 402
BsiEI	CGRYCG	2 cut(s)	150, 183
BsiHKAI	GWGCWC	3 cut(s)	287, 332, 402
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	8 cut(s)	201, 325, 333, 340, 360, 367, 373, 403
BslFI	GGGAC	6 cut(s)	26, 197, 228, 598, 628, 669
BslI	CCNNNNNNNGG	8 cut(s)	265, 339, 346, 366, 379, 402, 409, 652
BsmAI	GTCTC	2 cut(s)	20, 699
BsmBI	CGTCTC	2 cut(s)	20, 699
BsmFI	GGGAC	6 cut(s)	26, 197, 228, 598, 628, 669
BsnI	GGCC	5 cut(s)	149, 182, 269, 443, 458
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	3 cut(s)	287, 332, 402
Bsp13I	TCCGGA	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	218, 290, 412, 495
Bsp68I	TCGCGA	1 cut(s)	695
BspANI	GGCC	5 cut(s)	149, 182, 269, 443, 458
BspCNI	CTCAG	1 cut(s)	19
BspEI	TCCGGA	1 cut(s)	332
BspFNI	CGCG	4 cut(s)	140, 315, 446, 695
BspLI	GGNNCC	4 cut(s)	42, 244, 371, 644
BspPI	GGATC	2 cut(s)	213, 420
BspT107I	GGYRCC	1 cut(s)	369
BsrFI	RCCGGY	3 cut(s)	324, 372, 402
BsrI	ACTGG	1 cut(s)	624
BssAI	RCCGGY	3 cut(s)	324, 372, 402
BssECI	CCNNGG	5 cut(s)	144, 444, 477, 646, 667
BssMI	GATC	4 cut(s)	218, 290, 412, 495
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	664
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	4 cut(s)	144, 444, 477, 646
BstF5I	GGATG	3 cut(s)	167, 255, 341
BstFNI	CGCG	4 cut(s)	140, 315, 446, 695
BstHHI	GCGC	2 cut(s)	315, 395
BstKTI	GATC	4 cut(s)	221, 293, 415, 498
BstMAI	GTCTC	2 cut(s)	20, 699
BstMBI	GATC	4 cut(s)	218, 290, 412, 495
BstMCI	CGRYCG	2 cut(s)	150, 183
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 117, 134, 146, 158, 231, 336
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	666
BstUI	CGCG	4 cut(s)	140, 315, 446, 695
BstV1I	GCAGC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	218
BstZI	CGGCCG	2 cut(s)	147, 180
BsuI	GTATCC	1 cut(s)	720
BsuRI	GGCC	5 cut(s)	149, 182, 269, 443, 458
BtgI	CCRYGG	4 cut(s)	144, 444, 477, 646
BtrI	CACGTC	2 cut(s)	273, 659
BtsCI	GGATG	3 cut(s)	167, 255, 341
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
BtuMI	TCGCGA	1 cut(s)	695
Cac8I	GCNNGC	1 cut(s)	664
CfoI	GCGC	2 cut(s)	315, 395
Cfr10I	RCCGGY	3 cut(s)	324, 372, 402
Cfr13I	GGNCC	3 cut(s)	40, 242, 642
Cfr42I	CCGCGG	1 cut(s)	447
CseI	GACGC	3 cut(s)	52, 67, 129
Csp6I	GTAC	1 cut(s)	406
CspAI	ACCGGT	2 cut(s)	324, 402
CviAII	CATG	2 cut(s)	106, 307
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	4 cut(s)	220, 292, 414, 497
DpnII	GATC	4 cut(s)	218, 290, 412, 495
DriI	GACNNNNNGTC	1 cut(s)	640
EaeI	YGGCCR	3 cut(s)	147, 180, 267
EagI	CGGCCG	2 cut(s)	147, 180
Eam1104I	CTCTTC	1 cut(s)	18
Eam1105I	GACNNNNNGTC	1 cut(s)	640
EarI	CTCTTC	1 cut(s)	18
EclXI	CGGCCG	2 cut(s)	147, 180
Eco47I	GGWCC	3 cut(s)	40, 242, 642
Eco52I	CGGCCG	2 cut(s)	147, 180
Eco72I	CACGTG	1 cut(s)	421
Eco88I	CYCGRG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	666
Esp3I	CGTCTC	2 cut(s)	20, 699
FaeI	CATG	2 cut(s)	109, 310
FaiI	YATR	3 cut(s)	107, 308, 461
FaqI	GGGAC	6 cut(s)	26, 197, 228, 598, 628, 669
FatI	CATG	2 cut(s)	105, 306
FauI	CCCGC	3 cut(s)	100, 371, 439
Fnu4HI	GCNGC	8 cut(s)	76, 138, 150, 153, 183, 267, 444, 489
FokI	GGATG	3 cut(s)	154, 242, 348
Fsp4HI	GCNGC	8 cut(s)	76, 138, 150, 153, 183, 267, 444, 489
GlaI	GCGC	2 cut(s)	314, 394
GluI	GCNGC	8 cut(s)	76, 138, 150, 153, 183, 267, 444, 489
HaeIII	GGCC	5 cut(s)	149, 182, 269, 443, 458
HapII	CCGG	8 cut(s)	201, 325, 333, 340, 360, 367, 373, 403
HgaI	GACGC	3 cut(s)	52, 67, 129
HhaI	GCGC	2 cut(s)	315, 395
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	109, 310
Hin6I	GCGC	2 cut(s)	313, 393
HinP1I	GCGC	2 cut(s)	313, 393
HincII	GTYRAC	3 cut(s)	67, 322, 357
HindII	GTYRAC	3 cut(s)	67, 322, 357
HinfI	GANTC	2 cut(s)	299, 363
HpaII	CCGG	8 cut(s)	201, 325, 333, 340, 360, 367, 373, 403
Hpy166II	GTNNAC	4 cut(s)	67, 144, 322, 357
Hpy188I	TCNGA	5 cut(s)	9, 250, 295, 412, 726
Hpy188III	TCNNGA	6 cut(s)	214, 333, 452, 502, 578, 694
Hpy8I	GTNNAC	4 cut(s)	67, 144, 322, 357
Hpy99I	CGWCG	3 cut(s)	242, 277, 705
HpyAV	CCTTC	2 cut(s)	13, 575
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	4 cut(s)	272, 420, 658, 730
HpyCH4V	TGCA	1 cut(s)	616
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 117, 134, 146, 158, 231, 336
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	4 cut(s)	272, 420, 658, 730
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	109, 310
HspAI	GCGC	2 cut(s)	313, 393
Kpn2I	TCCGGA	1 cut(s)	332
KspI	CCGCGG	1 cut(s)	447
Kzo9I	GATC	4 cut(s)	218, 290, 412, 495
LmnI	GCTCC	4 cut(s)	230, 335, 382, 504
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	1 cut(s)	326
MaeII	ACGT	4 cut(s)	272, 420, 658, 730
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	4 cut(s)	220, 292, 414, 497
MboI	GATC	4 cut(s)	218, 290, 412, 495
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	3 cut(s)	287, 332, 402
MluCI	AATT	2 cut(s)	678, 713
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	612
MnlI	CCTC	6 cut(s)	3, 181, 256, 289, 303, 448
MroI	TCCGGA	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	2 cut(s)	53, 733
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	8 cut(s)	201, 325, 333, 340, 360, 367, 373, 403
MspR9I	CCNGG	1 cut(s)	668
MvaI	CCWGG	1 cut(s)	668
MvnI	CGCG	4 cut(s)	140, 315, 446, 695
MwoI	GCNNNNNNNGC	7 cut(s)	84, 117, 134, 146, 158, 231, 336
NdeII	GATC	4 cut(s)	218, 290, 412, 495
NlaIII	CATG	2 cut(s)	109, 310
NlaIV	GGNNCC	4 cut(s)	42, 244, 371, 644
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	79
NruI	TCGCGA	1 cut(s)	695
NspI	RCATGY	1 cut(s)	109
OliI	CACNNNNGTG	1 cut(s)	275
PciI	ACATGT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 299
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	363
PflMI	CCANNNNNTGG	1 cut(s)	652
PinAI	ACCGGT	2 cut(s)	324, 402
PkrI	GCNGC	8 cut(s)	77, 139, 151, 154, 184, 268, 445, 490
PleI	GAGTC	1 cut(s)	307
PmaCI	CACGTG	1 cut(s)	421
PmlI	CACGTG	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	307
Ppu21I	YACGTR	1 cut(s)	421
PpuMI	RGGWCCY	1 cut(s)	40
PscI	ACATGT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	666
PspCI	CACGTG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	4 cut(s)	42, 244, 371, 644
PspPI	GGNCC	3 cut(s)	40, 242, 642
PspPPI	RGGWCCY	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	218
RruI	TCGCGA	1 cut(s)	695
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	275
SacII	CCGCGG	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	53, 733
SatI	GCNGC	8 cut(s)	76, 138, 150, 153, 183, 267, 444, 489
Sau3AI	GATC	4 cut(s)	218, 290, 412, 495
Sau96I	GGNCC	3 cut(s)	40, 242, 642
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	3 cut(s)	287, 332, 402
SfaNI	GCATC	1 cut(s)	326
Sfr303I	CCGCGG	1 cut(s)	447
SgrBI	CCGCGG	1 cut(s)	447
SinI	GGWCC	3 cut(s)	40, 242, 642
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	678, 713
StyD4I	CCNGG	1 cut(s)	666
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	4 cut(s)	275, 423, 661, 733
TaqI	TCGA	5 cut(s)	237, 415, 451, 552, 579
TaqII	GACCGA	1 cut(s)	630
TasI	AATT	2 cut(s)	678, 713
TauI	GCSGC	7 cut(s)	78, 140, 152, 155, 185, 269, 446
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	2 cut(s)	53, 733
Tru9I	TTAA	2 cut(s)	53, 733
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	79
TspGWI	ACGGA	5 cut(s)	29, 44, 248, 588, 663
TspRI	CASTG	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	652
VpaK11BI	GGWCC	3 cut(s)	40, 242, 642
XceI	RCATGY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.